Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2060 ATGGAATCGACTTCCTTCAACTTAACTCCATACCCACCACCAGAAACAACGTATGAGAAAATCGTAGCCAATCCCTACATCTTTTCGGCAGCCTTGGAAAGGCTTCACTCTACCATGGGAACCAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTAGATCTGCATCAGCTTTTTGTGGAGGTTACTTCTCGTGGTGGCATCGAGAAGGTTGTAAGAGACAGAAAATGGAAGGAAGTAACTTCAGTTTTCAGCTTTCCTTCGACGGCCACTAATGCATCTTTCATCCTGAGGAAGTATTATATTTCATTGCTTCATCATTTTGAACAAATTTACTTTTTTAAAGCTGTGGGATGGACACCAGTAGATTCCGGTTCCTCTTCACACGCAAGAGCAACTACAATTCCTACGAGAGGGGCGACCTCCATGTTGCCGCCAGCGTTCCAGCAGGCACAGACTTCTTCTATAGCTCAACTTCCAGCAGTTGCTTCGAGTTCCGCATTACCACAACAGGTGTCTGGGATCATTGACGGAAAATTTGATGGCGGATATCTCATTACTGTCACTATAGGAACAGAACAACTTAAAGGTGTGCTTTATGAGGCTCCTTTGGAGCAACCTGCTCAGCAACCAGTGTTGCAGCCTGGTGGTGTTCTTTCCAAAGATGGTGCTGCCTCCACCCCTCACAGTCGCCGTCGGAAGAAATGCGAGATAAAGCGAAGGGATCCTGCTCTTCCAAAGCCAAACATAAGCGCCTACAACTTCTTCTTTGCTGAGCACTATGTTAGACTCAAACCAAGGTACCAAGGGAAGGAGAGGGAGATAAGTAAAATGATTGGTGAGCTTTGGAATAAACTTGTAGAGTCTGAAAGAACAGTCTATCAGGAGAAAGCTATGAAAGATAAAGAAAGATACAAAATTGAGATCGGGGATTACAAAGAGAAGCAAAGGAGAGGTCTAGTCATCAGAGATGCAGTGCCATTACGGCAGATTCATGAAGAAACCATGGGTGGTACCTCTCAAATACCGGATCATTATACAAGCTATGTTGAAGGAGATTCCGAGGAGGAGGAAGAAGAGGATTGGATGGAAGAGGAAGAGGAAGAGAAAGAGGAAGAGGAAGAAGGCCCATCTCCACAAGGAGTTGCCAACATGGATGTTAACATTTTGGTTGAGGAGGAACACTGCGAGACGAGAGCAGCAACCAAAGAGGATGTTAGAAAAGAGAGTAGCACAGTTGGTGACGACATGGATCTTAACAGTGAGGAGGAACACTGTGAGACGATAGCAGAAGCCAAAGAAGATGTTAGAAAAGAGAGTAGCACAGTTGGTGACGAAATGGATCTAAACATTGTATTTGAGGAGGAACACTGCGAGACAAGAGCAGAAGCCGAAGAAGATGTTAGAAAAGAGAGTAGCATGGTTGGTGACGGCATGGGTGTTAACATTTTGGTTAGGGAGGAACACTGCGAGATGATAGTAGAAGCCAAAGAAAATATTAGAGAAGAGCGTAGCATGGTTGGTGACGACATGGATGTTAACATTTTGGTTGAGGAGGAACACTGCGAGACGATAGGAGAAGTCGAAGAAGATGTTAGCAAAGAGAGTAGCCCGGTTGGTGACAACATGAATGTTAACATTTTAGTTGAGGAAGAACACTGCAAGACGATAGGAGAAGCCAAAGAAGATGTTAGAAAAGAGAGTAGCATGGTCGGGGATGATAATGAAATTTTCACTCGGGATTCTGTAATGGTGGAGGCCAAGGAAGAGGAAGAAGAAGCATCTCCACAAAGAGTTGACAACATGGATGTTAACATTTTGGTTGAGGAGGTACAGCATGAGACGAGGGCAACAACCGAAAAGGATGTTAGAAAAGAGAGTAGCACAGTCAATGAAGAAGCGGATATTAATATTTTGGTTGAAGAGGAACACTATGAGGCGAAAGCAGGCACGGAAGACAATGTTAGAAAAGAGAGTAGCACGGTCAGTGACGACAAGGAAATTAACATTTTGGTTGAAGAGGAACACAGCGAGAATAGAGCAACAGCCAAAGATGATGTTAGAAACGAGTGTAGCACAATTGGGGATAATGAGAATGGTAACATTTTGGTCGATGAAGAACACATCTGCATGAGCGTAGAAGCTGTAGAGAATGATAGAAAAGAGAGTAGCAGAGAAGTTTTTCGGAGAGGGGGTTCGTTAACCAGAACCAACCAACAACAACAAGAGGAGTTAATTAAAGAAGACTAA 2250 43.91 MESTSFNLTPYPPPETTYEKIVANPYIFSAALERLHSTMGTKFMIPIIGGKELDLHQLFVEVTSRGGIEKVVRDRKWKEVTSVFSFPSTATNASFILRKYYISLLHHFEQIYFFKAVGWTPVDSGSSSHARATTIPTRGATSMLPPAFQQAQTSSIAQLPAVASSSALPQQVSGIIDGKFDGGYLITVTIGTEQLKGVLYEAPLEQPAQQPVLQPGGVLSKDGAASTPHSRRRKKCEIKRRDPALPKPNISAYNFFFAEHYVRLKPRYQGKEREISKMIGELWNKLVESERTVYQEKAMKDKERYKIEIGDYKEKQRRGLVIRDAVPLRQIHEETMGGTSQIPDHYTSYVEGDSEEEEEEDWMEEEEEEKEEEEEGPSPQGVANMDVNILVEEEHCETRAATKEDVRKESSTVGDDMDLNSEEEHCETIAEAKEDVRKESSTVGDEMDLNIVFEEEHCETRAEAEEDVRKESSMVGDGMGVNILVREEHCEMIVEAKENIREERSMVGDDMDVNILVEEEHCETIGEVEEDVSKESSPVGDNMNVNILVEEEHCKTIGEAKEDVRKESSMVGDDNEIFTRDSVMVEAKEEEEEASPQRVDNMDVNILVEEVQHETRATTEKDVRKESSTVNEEADINILVEEEHYEAKAGTEDNVRKESSTVSDDKEINILVEEEHSENRATAKDDVRNECSTIGDNENGNILVDEEHICMSVEAVENDRKESSREVFRRGGSLTRTNQQQQEELIKED 749
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35005891 35012209 + Sed0002207.2 Sed04g2060 710663

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2060 749 Gene3D - 17 117 IPR036431 GO:0003677(InterPro)
Sed04g2060 749 Coils Coil 295 315 - -
Sed04g2060 749 MobiDBLite consensus disorder prediction 338 382 - -
Sed04g2060 749 Pfam HMG (high mobility group) box 246 313 IPR009071 -
Sed04g2060 749 SUPERFAMILY ARID-like 25 122 IPR036431 GO:0003677(InterPro)
Sed04g2060 749 ProSiteProfiles ARID domain profile. 22 113 IPR001606 GO:0003677(InterPro)
Sed04g2060 749 SUPERFAMILY HMG-box 239 318 IPR036910 -
Sed04g2060 749 MobiDBLite consensus disorder prediction 717 749 - -
Sed04g2060 749 Pfam ARID/BRIGHT DNA binding domain 28 109 IPR001606 GO:0003677(InterPro)
Sed04g2060 749 Gene3D High mobility group box domain 230 322 IPR036910 -
Sed04g2060 749 SMART ARID_2 19 109 - -
Sed04g2060 749 MobiDBLite consensus disorder prediction 211 236 - -
Sed04g2060 749 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 6 369 - -
Sed04g2060 749 CDD HMG-box_AtHMGB9-like 246 312 - -
Sed04g2060 749 SMART hmgende2 245 314 IPR009071 -
Sed04g2060 749 Coils Coil 355 376 - -
Sed04g2060 749 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 246 313 IPR009071 -
Sed04g2060 749 Coils Coil 419 439 - -
Sed04g2060 749 CDD ARID_HMGB9-like 24 109 IPR045303 GO:0003677(InterPro)
Sed04g2060 749 MobiDBLite consensus disorder prediction 351 375 - -
Sed04g2060 749 FunFam High mobility group B protein 15 16 130 - -
Sed04g2060 749 SMART bright_3 23 114 IPR001606 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2060 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2459 Sed-Chr1:18337435 Sed04g2060 Sed-Chr4:35005891 3.00E-66 dispersed
Sed04g2060 Sed-Chr4:35005891 Sed04g2062 Sed-Chr4:35006046 4.00E-255 dispersed
Sed04g2060 Sed-Chr4:35005891 Sed04g2061 Sed-Chr4:35006046 4.00E-255 tandem
Sed04g2060 Sed-Chr4:35005891 Sed09g0187 Sed-Chr9:1478192 3.00E-138 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed09g0187 . 1 370 ARID Transcription Factor Family AT1G04880 56.9 2.8e-107 386.7
Sed04g2060 . 14 330 ARID Transcription Factor Family AT1G04880 53.8 3.9e-88 323.2
Sed04g2061 . 14 330 ARID Transcription Factor Family AT1G04880 53.8 3.9e-88 323.2
Sed04g2062 . 14 330 ARID Transcription Factor Family AT1G04880 53.8 3.9e-88 323.2
Sed04g2063 . 14 330 ARID Transcription Factor Family AT1G04880 53.8 3.9e-88 323.2
Sed04g1052 . 200 480 ARID Transcription Factor Family AT1G20910 60.6 4.0e-89 326.2
Sed01g2459 . 16 310 ARID Transcription Factor Family AT1G76110 66.3 3.5e-110 396.0
Sed04g1052 . 200 510 ARID Transcription Factor Family AT1G76510 62.0 4.7e-107 386.0
Sed06g2291 . 2 781 ARID Transcription Factor Family AT3G43240 58.4 4.4e-262 901.7
Sed06g2292 . 2 781 ARID Transcription Factor Family AT3G43240 58.4 4.4e-262 901.7
Sed06g2295 . 2 781 ARID Transcription Factor Family AT3G43240 58.4 4.4e-262 901.7
Sed06g2296 . 2 781 ARID Transcription Factor Family AT3G43240 58.4 4.4e-262 901.7
Sed06g2293 . 2 786 ARID Transcription Factor Family AT3G43240 58.0 3.1e-260 895.6
Sed06g2294 . 2 786 ARID Transcription Factor Family AT3G43240 58.0 3.1e-260 895.6
Sed06g0034 . 2 773 ARID Transcription Factor Family AT3G43240 58.1 1.4e-255 880.2
Sed04g2377 . 4 772 ARID Transcription Factor Family AT3G43240 57.4 1.7e-250 863.2
Sed04g2378 . 4 772 ARID Transcription Factor Family AT3G43240 57.4 1.7e-250 863.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0021115 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 4
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38212 PF01388 ARID 2.60E-15 CL0123 Sed TR