Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2060 ATGGAATCGACTTCCTTCAACTTAACTCCATACCCACCACCAGAAACAACGTATGAGAAAATCGTAGCCAATCCCTACATCTTTTCGGCAGCCTTGGAAAGGCTTCACTCTACCATGGGAACCAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTAGATCTGCATCAGCTTTTTGTGGAGGTTACTTCTCGTGGTGGCATCGAGAAGGTTGTAAGAGACAGAAAATGGAAGGAAGTAACTTCAGTTTTCAGCTTTCCTTCGACGGCCACTAATGCATCTTTCATCCTGAGGAAGTATTATATTTCATTGCTTCATCATTTTGAACAAATTTACTTTTTTAAAGCTGTGGGATGGACACCAGTAGATTCCGGTTCCTCTTCACACGCAAGAGCAACTACAATTCCTACGAGAGGGGCGACCTCCATGTTGCCGCCAGCGTTCCAGCAGGCACAGACTTCTTCTATAGCTCAACTTCCAGCAGTTGCTTCGAGTTCCGCATTACCACAACAGGTGTCTGGGATCATTGACGGAAAATTTGATGGCGGATATCTCATTACTGTCACTATAGGAACAGAACAACTTAAAGGTGTGCTTTATGAGGCTCCTTTGGAGCAACCTGCTCAGCAACCAGTGTTGCAGCCTGGTGGTGTTCTTTCCAAAGATGGTGCTGCCTCCACCCCTCACAGTCGCCGTCGGAAGAAATGCGAGATAAAGCGAAGGGATCCTGCTCTTCCAAAGCCAAACATAAGCGCCTACAACTTCTTCTTTGCTGAGCACTATGTTAGACTCAAACCAAGGTACCAAGGGAAGGAGAGGGAGATAAGTAAAATGATTGGTGAGCTTTGGAATAAACTTGTAGAGTCTGAAAGAACAGTCTATCAGGAGAAAGCTATGAAAGATAAAGAAAGATACAAAATTGAGATCGGGGATTACAAAGAGAAGCAAAGGAGAGGTCTAGTCATCAGAGATGCAGTGCCATTACGGCAGATTCATGAAGAAACCATGGGTGGTACCTCTCAAATACCGGATCATTATACAAGCTATGTTGAAGGAGATTCCGAGGAGGAGGAAGAAGAGGATTGGATGGAAGAGGAAGAGGAAGAGAAAGAGGAAGAGGAAGAAGGCCCATCTCCACAAGGAGTTGCCAACATGGATGTTAACATTTTGGTTGAGGAGGAACACTGCGAGACGAGAGCAGCAACCAAAGAGGATGTTAGAAAAGAGAGTAGCACAGTTGGTGACGACATGGATCTTAACAGTGAGGAGGAACACTGTGAGACGATAGCAGAAGCCAAAGAAGATGTTAGAAAAGAGAGTAGCACAGTTGGTGACGAAATGGATCTAAACATTGTATTTGAGGAGGAACACTGCGAGACAAGAGCAGAAGCCGAAGAAGATGTTAGAAAAGAGAGTAGCATGGTTGGTGACGGCATGGGTGTTAACATTTTGGTTAGGGAGGAACACTGCGAGATGATAGTAGAAGCCAAAGAAAATATTAGAGAAGAGCGTAGCATGGTTGGTGACGACATGGATGTTAACATTTTGGTTGAGGAGGAACACTGCGAGACGATAGGAGAAGTCGAAGAAGATGTTAGCAAAGAGAGTAGCCCGGTTGGTGACAACATGAATGTTAACATTTTAGTTGAGGAAGAACACTGCAAGACGATAGGAGAAGCCAAAGAAGATGTTAGAAAAGAGAGTAGCATGGTCGGGGATGATAATGAAATTTTCACTCGGGATTCTGTAATGGTGGAGGCCAAGGAAGAGGAAGAAGAAGCATCTCCACAAAGAGTTGACAACATGGATGTTAACATTTTGGTTGAGGAGGTACAGCATGAGACGAGGGCAACAACCGAAAAGGATGTTAGAAAAGAGAGTAGCACAGTCAATGAAGAAGCGGATATTAATATTTTGGTTGAAGAGGAACACTATGAGGCGAAAGCAGGCACGGAAGACAATGTTAGAAAAGAGAGTAGCACGGTCAGTGACGACAAGGAAATTAACATTTTGGTTGAAGAGGAACACAGCGAGAATAGAGCAACAGCCAAAGATGATGTTAGAAACGAGTGTAGCACAATTGGGGATAATGAGAATGGTAACATTTTGGTCGATGAAGAACACATCTGCATGAGCGTAGAAGCTGTAGAGAATGATAGAAAAGAGAGTAGCAGAGAAGTTTTTCGGAGAGGGGGTTCGTTAACCAGAACCAACCAACAACAACAAGAGGAGTTAATTAAAGAAGACTAA 2250 43.91 MESTSFNLTPYPPPETTYEKIVANPYIFSAALERLHSTMGTKFMIPIIGGKELDLHQLFVEVTSRGGIEKVVRDRKWKEVTSVFSFPSTATNASFILRKYYISLLHHFEQIYFFKAVGWTPVDSGSSSHARATTIPTRGATSMLPPAFQQAQTSSIAQLPAVASSSALPQQVSGIIDGKFDGGYLITVTIGTEQLKGVLYEAPLEQPAQQPVLQPGGVLSKDGAASTPHSRRRKKCEIKRRDPALPKPNISAYNFFFAEHYVRLKPRYQGKEREISKMIGELWNKLVESERTVYQEKAMKDKERYKIEIGDYKEKQRRGLVIRDAVPLRQIHEETMGGTSQIPDHYTSYVEGDSEEEEEEDWMEEEEEEKEEEEEGPSPQGVANMDVNILVEEEHCETRAATKEDVRKESSTVGDDMDLNSEEEHCETIAEAKEDVRKESSTVGDEMDLNIVFEEEHCETRAEAEEDVRKESSMVGDGMGVNILVREEHCEMIVEAKENIREERSMVGDDMDVNILVEEEHCETIGEVEEDVSKESSPVGDNMNVNILVEEEHCKTIGEAKEDVRKESSMVGDDNEIFTRDSVMVEAKEEEEEASPQRVDNMDVNILVEEVQHETRATTEKDVRKESSTVNEEADINILVEEEHYEAKAGTEDNVRKESSTVSDDKEINILVEEEHSENRATAKDDVRNECSTIGDNENGNILVDEEHICMSVEAVENDRKESSREVFRRGGSLTRTNQQQQEELIKED 749
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35005891 35012209 + Sed0002207.2 Sed04g2060 710663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2060 749 Gene3D - 17 117 IPR036431 GO:0003677(InterPro)
Sed04g2060 749 Coils Coil 295 315 - -
Sed04g2060 749 MobiDBLite consensus disorder prediction 338 382 - -
Sed04g2060 749 Pfam HMG (high mobility group) box 246 313 IPR009071 -
Sed04g2060 749 SUPERFAMILY ARID-like 25 122 IPR036431 GO:0003677(InterPro)
Sed04g2060 749 ProSiteProfiles ARID domain profile. 22 113 IPR001606 GO:0003677(InterPro)
Sed04g2060 749 SUPERFAMILY HMG-box 239 318 IPR036910 -
Sed04g2060 749 MobiDBLite consensus disorder prediction 717 749 - -
Sed04g2060 749 Pfam ARID/BRIGHT DNA binding domain 28 109 IPR001606 GO:0003677(InterPro)
Sed04g2060 749 Gene3D High mobility group box domain 230 322 IPR036910 -
Sed04g2060 749 SMART ARID_2 19 109 - -
Sed04g2060 749 MobiDBLite consensus disorder prediction 211 236 - -
Sed04g2060 749 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 6 369 - -
Sed04g2060 749 CDD HMG-box_AtHMGB9-like 246 312 - -
Sed04g2060 749 SMART hmgende2 245 314 IPR009071 -
Sed04g2060 749 Coils Coil 355 376 - -
Sed04g2060 749 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 246 313 IPR009071 -
Sed04g2060 749 Coils Coil 419 439 - -
Sed04g2060 749 CDD ARID_HMGB9-like 24 109 IPR045303 GO:0003677(InterPro)
Sed04g2060 749 MobiDBLite consensus disorder prediction 351 375 - -
Sed04g2060 749 FunFam High mobility group B protein 15 16 130 - -
Sed04g2060 749 SMART bright_3 23 114 IPR001606 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2459 Sed-Chr1:18337435 Sed04g2060 Sed-Chr4:35005891 3.00E-66 dispersed
Sed04g2060 Sed-Chr4:35005891 Sed04g2062 Sed-Chr4:35006046 4.00E-255 dispersed
Sed04g2060 Sed-Chr4:35005891 Sed04g2061 Sed-Chr4:35006046 4.00E-255 tandem
Sed04g2060 Sed-Chr4:35005891 Sed09g0187 Sed-Chr9:1478192 3.00E-138 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38212 PF01388 ARID 2.60E-15 CL0123 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2060 - - - 0.0