Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2076 ATGGGTAAAGAAAAGATTCACATCAGCATTGTGGTCATTGGCCATGTCGATTCTGGCAAGTCAACCACCACCGGTCACCTTATTTACAAGCTTGGAGGAATTGACAAGCGTGTGATTGAGAGATTTGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCTTGGGTGCTCGACAAACTGAAGGCTGAGCGTGAACGTGGTATCACCATTGACATTGCTCTCTGGAAGTTTGAGACCACCAAGTACTACTGCACAGTCATTGATGCACCTGGTCATCGTGACTTTATCAAGAACATGATTACAGGAACCTCACAGGCCGACTGTGCAGTCCTCATCATCGATTCCACCACTGGTGGTTTTGAGGCTGGTATTTCTAAGGATGGTCAGACCCGTGAGCACGCTCTGCTTGCTTTCACCCTTGGTGTGAAGCAAATGATCTGTTGCTGTAACAAGATGGATGCCACCACCCCCAAATACTCTAAGGCAAGATATGATGAAATTGTCAAGGAAGTCTCATCTTACCTCAAGAAGGTCGGATACAACCCAGAAAAAATTGCCTTCGTACCCATCTCTGGTTTTGAGGGTGACAACATGATTGAGAGGTCCACCAACCTCGACTGGTACAAGGGACCAACCCTCCTTGAGGCTCTTGACATGATCTCCGAGCCCAAGAGGCCCTCAGACAAGCCCCTCCGTCTACCACTTCAGGATGTTTACAAGATTGGTGGTATTGGAACCGTTCCCGTCGGTCGAGTTGAAACGGGTGTCCTCAAGCCTGGTATGGTTGTCACCTTCGGGCCAAGTGGACTGACCACTGAAGTTAAGTCTGTTGAAATGCACCACGAGTCTCTCCCAGAGGCCTTGCCCGGTGACAATGTTGGTTTCAATGTGAAGAATGTTGCCGTCAAGGATCTTAAGCGTGGTTTCGTGGCTTCCAACTCCAAGGATGACCCAGCCAAGGAGGCTGCCAACTTCACAGCCCAGGTTATCATCATGAACCACCCTGGTCAAATTGGTAACGGATATGCCCCAGTCCTTGATTGCCACACCTCCCACATTGCTGTGAAGTTCTCTGAGATCCTCACCAAGATTGATCGTCGATCTGGTAAGGAACTCGAGAAGGAGCCTAAGTTCTTGAAGAATGGTGATGCCGGTATGGTGAAGATGGTTCCCACCAAGCCTATGGTTGTCGAGACCTTTGCTACGTACCCACCGTTGGGTCGTTTTGCTGTTCGTGACATGCGGCAAACTGTAGCTGTTGGTGTTATCAAGAGTGTAGAGAAGAAGGACCCAACTGGAGCCAAGGTGACTAAGTCTGCCGTGAAGAAGAAGTAA 1344 49.03 MGKEKIHISIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKIAFVPISGFEGDNMIERSTNLDWYKGPTLLEALDMISEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHESLPEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFATYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKSAVKKK 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35072490 35074259 - Sed0002891.1 Sed04g2076 710679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2076 447 FunFam Elongation factor 1-alpha 323 430 - -
Sed04g2076 447 Gene3D Translation factors 229 316 - -
Sed04g2076 447 CDD EF1_alpha 9 227 - -
Sed04g2076 447 NCBIfam translation elongation factor EF-1 subunit alpha 1 433 IPR004539 GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro)
Sed04g2076 447 FunFam Elongation factor 1-alpha 229 316 - -
Sed04g2076 447 SUPERFAMILY Translation proteins 226 321 IPR009000 -
Sed04g2076 447 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed04g2076 447 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed04g2076 447 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed04g2076 447 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed04g2076 447 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed04g2076 447 Pfam Elongation factor Tu GTP binding domain 6 222 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed04g2076 447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Sed04g2076 447 Gene3D - 1 226 IPR027417 -
Sed04g2076 447 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 326 429 IPR009001 -
Sed04g2076 447 CDD EF1_alpha_II 230 320 - -
Sed04g2076 447 Pfam Elongation factor Tu domain 2 248 313 IPR004161 GO:0005525(InterPro)
Sed04g2076 447 CDD EF1_alpha_III 323 426 - -
Sed04g2076 447 Gene3D Translation factors 323 430 - -
Sed04g2076 447 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed04g2076 447 PANTHER TRANSLATION FACTOR 4 427 IPR050100 GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0006412(PANTHER)|GO:0006414(PANTHER)
Sed04g2076 447 FunFam Elongation factor 1-alpha 1 226 - -
Sed04g2076 447 Pfam GTP-eEF1A C-terminal domain-like 327 427 IPR054696 -
Sed04g2076 447 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Sed04g2076 447 Hamap Elongation factor Tu [tuf]. 2 432 IPR004539 GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2821 Sed-Chr1:23499968 Sed04g2076 Sed-Chr4:35072490 3.70E-190 dispersed
Sed01g2822 Sed-Chr1:23512250 Sed04g2076 Sed-Chr4:35072490 5.00E-253 dispersed
Sed03g0039 Sed-Chr3:284677 Sed04g2076 Sed-Chr4:35072490 1.90E-233 dispersed
Sed04g2076 Sed-Chr4:35072490 Sed09g0179 Sed-Chr9:1445372 2.40E-255 dispersed
Sed04g2073 Sed-Chr4:35059037 Sed04g2076 Sed-Chr4:35072490 4.20E-260 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2076 K03231 - csv:101215193 875.93