Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed04g2129 | ATGTATACGGCGGTGTTCGTGGTGGCGGTGGCAGCGGCGGTGGTGGTCTGGGTGTTGAAGAATGCGAACCGATGGGTCTATGAAACCTCTCGGCTCCGTTCAAAGCGGTTTGGGCTGCCGCCCGGTGATCTCGGGTGGCCGTTCATCGGCAACATGTGGTCTTTTCTTAGAGCTTTCAAGTCTTCTCGTCCTGATTCTTTCATGGAGTCCTTCTTTTACAGGTATGGACATATAGGAATCTATAAGGCTTTCATGTTTGGATGCCCAAGCGTGATTGTGACTTCACCAGAAGCATGCAAAAGAGTTTTGAACGACGACGATGCATTCGGCCCGGGATGGCCTCGTTCCACCATGAAACTCATCGGAGAAAAATCATTCATTGGCATTTCTTACCAAGAACACAAACGACTTCGTCGTATAACTGCTGCGCCCGTCAATGGCTACGAAGCATTGACTGTGTACCTCACATACATCGAAAAGATCGTCGTTGCTTCCTTGCAAAAATGGCCCTCCATGGGACAAATAGAGTTCTTAACCGAGCTACGAAAACTTACCTTTAAGATCATTATGTATATATTTCTTAGCTCGGAGAGTGAGGCCGCAATGGAGGTTTTGGAGAGGGAGTACACATCGTTAAATTATGGTGTGAGAGCAATGGCGATCGACATTCCAGGTTTTGCTTATCATAAAGCACTCAAGGCACGGAGAAATCTTGTGGCGGCGTTTCAGTCGATTGTGAGCAAGCGAAGGAAGGAAAGAGAGAGCAATTTGGAAACAAAAAGGAGAGATATGATGGATGCTTTGCTAGATGTAGAAGATGAGAATGGTAGAAGATTGAACGATGAAGAAATCATTGATGTCTTGATAATGTACTTGAATGCAGGCCATGAATCTTCAGGTCACACAATGATGTGGGCAGTAATTTTCCTACAAAAACATCCCAAATTCCTTGAAAAGGCCAAGGAAGAGCAAGAAGAGATAGTAAGAAAACGACCTTGCGGGCAAAACGGTTTAACTCTCAAGGAAGTCCGAGAAATGGATTATCTTTCAAAGGTGATCGATGAAACACTACGTGTCGTATCATTCTCACTTATGGTCTTTCGAGAGGCAAAACATGATGTCAATATTAGTGGTTATACCATTCCAAAAGGGTGGAAAGTCTTAGTCTGGTTTAGAAGCGTTCACCACGATCCTGAAACTTATCCGAACCCAAAAGAATTTAATCCTTCAAGATGGGATAATTTCACTCCAAAAGCAGGAAGCTTTCTTCCATTTGGAGCCGGAAGTAGATTATGTCCTGGAAATGATCTTGCAAAGCTAGAAATCTCCATCTTTCTCCATTATTTTCTCCTCAATTATCAGTTGGAAAGGGATAATCCAAACAGCCCAGTGAGGTATCTACCCCATTCAAGGCCTAAAGACAATTGTTTGGCAAGGATCAAGAGAGTTGGTGCTCCACTTGATTGA | 1467 | 43.97 | MYTAVFVVAVAAAVVVWVLKNANRWVYETSRLRSKRFGLPPGDLGWPFIGNMWSFLRAFKSSRPDSFMESFFYRYGHIGIYKAFMFGCPSVIVTSPEACKRVLNDDDAFGPGWPRSTMKLIGEKSFIGISYQEHKRLRRITAAPVNGYEALTVYLTYIEKIVVASLQKWPSMGQIEFLTELRKLTFKIIMYIFLSSESEAAMEVLEREYTSLNYGVRAMAIDIPGFAYHKALKARRNLVAAFQSIVSKRRKERESNLETKRRDMMDALLDVEDENGRRLNDEEIIDVLIMYLNAGHESSGHTMMWAVIFLQKHPKFLEKAKEEQEEIVRKRPCGQNGLTLKEVREMDYLSKVIDETLRVVSFSLMVFREAKHDVNISGYTIPKGWKVLVWFRSVHHDPETYPNPKEFNPSRWDNFTPKAGSFLPFGAGSRLCPGNDLAKLEISIFLHYFLLNYQLERDNPNSPVRYLPHSRPKDNCLARIKRVGAPLD | 488 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 35471300 | 35478691 | + | Sed0009039.1 | Sed04g2129 | 710732 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed04g2129 | 488 | FunFam | Ent-kaurenoic acid oxidase | 30 | 483 | - | - | |
| Sed04g2129 | 488 | PRINTS | E-class P450 group I signature | 422 | 432 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2129 | 488 | PRINTS | E-class P450 group I signature | 432 | 455 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2129 | 488 | PRINTS | E-class P450 group I signature | 303 | 329 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2129 | 488 | PRINTS | E-class P450 group I signature | 390 | 414 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2129 | 488 | SUPERFAMILY | Cytochrome P450 | 32 | 481 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2129 | 488 | Pfam | Cytochrome P450 | 40 | 461 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2129 | 488 | CDD | CYP90-like | 74 | 482 | - | - | |
| Sed04g2129 | 488 | Gene3D | Cytochrome P450 | 29 | 483 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2129 | 488 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 425 | 434 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed04g2129 | 488 | PRINTS | P450 superfamily signature | 351 | 362 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2129 | 488 | PRINTS | P450 superfamily signature | 423 | 432 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2129 | 488 | PRINTS | P450 superfamily signature | 294 | 311 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2129 | 488 | PRINTS | P450 superfamily signature | 432 | 443 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2129 | 488 | PANTHER | CYTOCHROME P450 26 | 39 | 460 | - | GO:0004497(PANTHER)|GO:0005783(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)|GO:0051777(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed04g2129 | Sed-Chr4:35471300 | Sed09g0957 | Sed-Chr9:31147827 | 7.80E-119 | dispersed | |
| Sed04g2129 | Sed-Chr4:35471300 | Sed04g2130 | Sed-Chr4:35471300 | 5.60E-266 | tandem | |
| Sed05g0278 | Sed-Chr5:1723726 | Sed04g2129 | Sed-Chr4:35471300 | 1.00E-128 | transposed | |
| Sed02g1557 | Sed-Chr2:51234556 | Sed04g2129 | Sed-Chr4:35471300 | 1.80E-200 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed04g2129 | K04123 | - | csv:101220640 | 781.941 |