Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed04g2130 | ATGTATACGGCGGTGTTCGTGGTGGCGGTGGCAGCGGCGGTGGTGGTCTGGGTGTTGAAGAATGCGAACCGATGGGTCTATGAAACCTCTCGGCTCCGTTCAAAGCGGTTTGGGCTGCCGCCCGGTGATCTCGGGTGGCCGTTCATCGGCAACATGTGGTCTTTTCTTAGAGCTTTCAAGTCTTCTCGTCCTGATTCTTTCATGGAGTCCTTCTTTTACAGGTATGGACATATAGGAATCTATAAGGCTTTCATGTTTGGATGCCCAAGCGTGATTGTGACTTCACCAGAAGCATGCAAAAGAGTTTTGAACGACGACGATGCATTCGGCCCGGGATGGCCTCGTTCCACCATGAAACTCATCGGAGAAAAATCATTCATTGGCATTTCTTACCAAGAACACAAACGACTTCGTCGTATAACTGCTGCGCCCGTCAATGGCTACGAAGCATTGACTGTGTACCTCACATACATCGAAAAGATCGTCGTTGCTTCCTTGCAAAAATGGCCCTCCATGGGACAAATAGAGTTCTTAACCGAGCTACGAAAACTTACCTTTAAGATCATTATGTATATATTTCTTAGCTCGGAGAGTGAGGCCGCAATGGAGGTTTTGGAGAGGGAGTACACATCGTTAAATTATGGTGTGAGAGCAATGGCGATCGACATTCCAGGTTTTGCTTATCATAAAGCACTCAAGGCACGGAGAAATCTTGTGGCGGCGTTTCAGTCGATTGTGAGCAAGCGAAGGAAGGAAAGAGAGAGCAATTTGGAAACAAAAAGGAGAGATATGATGGATGCTTTGCTAGATGTAGAAGATGAGAATGGTAGAAGATTGAACGATGAAGAAATCATTGATGTCTTGATAATGTACTTGAATGCAGGCCATGAATCTTCAGGTCACACAATGATGTGGGCAGTAATTTTCCTACAAAAACATCCCAAATTCCTTGAAAAGGCCAAGGAAGAGCAAGAAGAGATAGTAAGAAAACGACCTTGCGGGCAAAACGGTTTAACTCTCAAGGAAGTCCGAGAAATGGATTATCTTTCAAAGGTGATCGATGAAACACTACGTGTCGTATCATTCTCACTTATGGTCTTTCGAGAGGCAAAACATGATGTCAATATTAGTGGTTATACCATTCCAAAAGGGTGGAAAGTCTTAGTCTGGTTTAGAAGCGTTCACCACGATCCTGAAACTTATCCGAACCCAAAAGAATTTAATCCTTCAAGATGGGATAATTTCACTCCAAAAGCAGGAAGCTTTCTTCCATTTGGAGCCGGAAGTAGATTATGTCCTGGAAATGATCTTGCAAAGCTAGAAATCTCCATCTTTCTCCATTATTTTCTCCTCAATTATCAGTGA | 1365 | 43.88 | MYTAVFVVAVAAAVVVWVLKNANRWVYETSRLRSKRFGLPPGDLGWPFIGNMWSFLRAFKSSRPDSFMESFFYRYGHIGIYKAFMFGCPSVIVTSPEACKRVLNDDDAFGPGWPRSTMKLIGEKSFIGISYQEHKRLRRITAAPVNGYEALTVYLTYIEKIVVASLQKWPSMGQIEFLTELRKLTFKIIMYIFLSSESEAAMEVLEREYTSLNYGVRAMAIDIPGFAYHKALKARRNLVAAFQSIVSKRRKERESNLETKRRDMMDALLDVEDENGRRLNDEEIIDVLIMYLNAGHESSGHTMMWAVIFLQKHPKFLEKAKEEQEEIVRKRPCGQNGLTLKEVREMDYLSKVIDETLRVVSFSLMVFREAKHDVNISGYTIPKGWKVLVWFRSVHHDPETYPNPKEFNPSRWDNFTPKAGSFLPFGAGSRLCPGNDLAKLEISIFLHYFLLNYQ | 454 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 35471300 | 35478691 | + | Sed0009039.2 | Sed04g2130 | 710733 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed04g2130 | 454 | PRINTS | P450 superfamily signature | 432 | 443 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2130 | 454 | PRINTS | P450 superfamily signature | 423 | 432 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2130 | 454 | PRINTS | P450 superfamily signature | 351 | 362 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2130 | 454 | PRINTS | P450 superfamily signature | 294 | 311 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2130 | 454 | Gene3D | Cytochrome P450 | 29 | 454 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2130 | 454 | SUPERFAMILY | Cytochrome P450 | 32 | 453 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2130 | 454 | PRINTS | E-class P450 group I signature | 432 | 454 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2130 | 454 | PRINTS | E-class P450 group I signature | 303 | 329 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2130 | 454 | PRINTS | E-class P450 group I signature | 390 | 414 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2130 | 454 | PRINTS | E-class P450 group I signature | 422 | 432 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2130 | 454 | FunFam | Ent-kaurenoic acid oxidase | 30 | 454 | - | - | |
| Sed04g2130 | 454 | Pfam | Cytochrome P450 | 40 | 454 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2130 | 454 | PANTHER | CYTOCHROME P450 26 | 39 | 453 | - | GO:0004497(PANTHER)|GO:0005783(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)|GO:0051777(PANTHER) | |
| Sed04g2130 | 454 | CDD | CYP90-like | 74 | 453 | - | - | |
| Sed04g2130 | 454 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 425 | 434 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed02g1557 | Sed-Chr2:51234556 | Sed04g2130 | Sed-Chr4:35471300 | 1.50E-189 | dispersed | |
| Sed04g2130 | Sed-Chr4:35471300 | Sed05g0278 | Sed-Chr5:1723726 | 1.30E-115 | dispersed | |
| Sed04g2129 | Sed-Chr4:35471300 | Sed04g2130 | Sed-Chr4:35471300 | 5.60E-266 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed04g2130 | K04123 | - | csv:101220640 | 732.635 |