Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2132 ATGGAGACTTTAAACTTAGGCTCCGCTCCTCACTTTGTTGACCAGCTTCAGCAACGCCCTGATCTCCACCTTGAAACCTCACCGAATTCCGACCATGTCGCGAATCTCAACCACTTCAACGGCAGTGGAAGCGGCGGCTCTAGCGGGGACGTCATGGGCCGTCGCCCGAGAGGTCGCCCTGCCGGGTCCAAGAACAAACCCAAGCCTCCCGTGATCATCACGCGCGAGAGTGCCAACACGCTCCGAGCTCATATCTTGGAGGTTGCCAGCGGCTGCGATGTGTTTGAGGCCGTGGCAGCCTATGCGCGACGGCGACAACGGGGGATCTGTGTGTTGAGTGGGAGTGGGATAGTGAATAATGTTAGCTTGAGGCAGCCGGCCGCGGCGGGGTCGATGTTGGCGCTCCAAGGGAGGTTTGAGATTTTGTCGTTGTCGGGATCGTTTCTTCCTCCGCCTGCCCCGCCTGGTGCTACTAGTCTCACCATCTTCTTAGCTGGAGGACAAGGGCAGGTGGTTGGAGGGAACGTGGTGGGAGCTTTGATCGCATCGGGGCCGGTCATCGTCATAGCATCGTCGTTTAGTAACGTTGCATACGAGAGGCTGCCGTTGGACGAAGAAGAATTGCCGATGCAGGCAGCTGGTGGAGAAGGGGACGGAGGGGATGGCGGCGGTGGCGATGGTCGCAACAACCTTTTTCCAGATGCATCATCCGGATTGCCCTTTCTTAATCTGCCTATGAACATGCCCAATCAGAATCAATTTTTCGGTTGA 771 57.07 METLNLGSAPHFVDQLQQRPDLHLETSPNSDHVANLNHFNGSGSGGSSGDVMGRRPRGRPAGSKNKPKPPVIITRESANTLRAHILEVASGCDVFEAVAAYARRRQRGICVLSGSGIVNNVSLRQPAAAGSMLALQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGNVVGALIASGPVIVIASSFSNVAYERLPLDEEELPMQAAGGEGDGGDGGGGDGRNNLFPDASSGLPFLNLPMNMPNQNQFFG 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35516710 35518100 - Sed0001539.1 Sed04g2132 710735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2132 256 Pfam Plants and Prokaryotes Conserved (PCC) domain 82 194 IPR005175 -
Sed04g2132 256 CDD DUF296 82 165 IPR005175 -
Sed04g2132 256 SUPERFAMILY AF0104/ALDC/Ptd012-like 78 211 - -
Sed04g2132 256 PIRSF ESCAROLA 2 254 IPR014476 GO:0003680(InterPro)
Sed04g2132 256 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 41 225 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed04g2132 256 Gene3D - 81 212 - -
Sed04g2132 256 FunFam AT-hook motif nuclear-localized protein 81 208 - -
Sed04g2132 256 ProSiteProfiles PPC domain profile profile. 78 214 IPR005175 -
Sed04g2132 256 MobiDBLite consensus disorder prediction 210 232 - -
Sed04g2132 256 MobiDBLite consensus disorder prediction 37 70 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0827 Sed-Chr4:7002495 Sed04g2132 Sed-Chr4:35516710 5.10E-74 dispersed
Sed04g2132 Sed-Chr4:35516710 Sed05g0289 Sed-Chr5:1834335 1.70E-77 dispersed
Sed12g0290 Sed-Chr12:1686312 Sed04g2132 Sed-Chr4:35516710 2.70E-84 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2132 - - - 0.0