Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2163 ATGGATGGACCAATTGGTCGGGGTGGTGGCGGCATGGATATGAATTTACCGAACTATAAGCTTGGAAAAACCCTGGGCATTGGTTCATTTGGGAAAGTGAAAATTGCAGAGCATGCTTTAACAGGTCATAAAGTTGCTATTAAGATACTTAACCGCCGGAAGATAAGAAACTTGGACATGGAAGAAAAAGTGAGGAGAGAGATTAAAATATTGAGACTGTTCATGCATCCTCACATTATACGGCTCTATGAAGTTATAGAGACTCCGGCAGACATTTATGTTGTGATGGAGTATGTAAAATCGGGAGAGCTCTTTGATTATATTGTAGAAAAGGGTAGGTTGCAGGAAGATGAAGCCCGTAATTTTTTCCAGCAGATAATTTCTGGTGTGGAGTATTGCCACAGAAATATGGTGGCGCACAGAGATCTTAAGCCTGAGAATTTGCTTTTGGACTCCAAATCTAATGTGAAGATTGCAGATTTTGGTTTGAGCAATATAATGCGTGATGGTCACTTTCTGAAGACAAGTTGTGGGAGTCCCAATTATGCTGCCCCAGAGGTAATCTCCGGAAAATTATATGCTGGACCTGAAGTAGATGTATGGAGTTGTGGTGTTATTTTGTATGCTCTTCTATGTGGCACTCTTCCTTTTGACGATGAAAACATTCCCAATCTGTTTAAGAAAATAAAGGGTGGGATCTATACTCTTCCAAGTCACTTATCATCAGGTGCTAGAGAACTGATTCCTAGTATGCTGGTTGTTGATCCAATGAAGCGCATCACAATCCCCGAGATTCGACAGCACTCATGGTTTCAGGCACATCTTCCACGCTATTTAGCTGTGCCTCCACCTGATACAATGCAACAAGCAAAAAAGATTGATGAAGACATTCTGCAGGAGGTTATAAAGATGGGATTTGACAGGAATCAGCTGGTGGAGTCTCTTGGTAACCGAATTCAAAATGAGGCTACAGTTGCTTATTATTTGTTACTGGACAATCGGTTCCGTGTTTCAAGTGGTTATCTTGGAGCTGAATTTCAGGAGACTATGGAAACAGGATTCAACCGTATGCACCCTGGTGATCCCACAAGTCCTGCAGTAGGAGGACACCGTCTTCCTGGATATATGGATTATCAAGCCATGGGCTTAAGATCACAGTTTCCCGTTGAGAGAAAGTGGGCTCTGGGATTACAGTCTCGAGCTCATCCCCGTGAAATTATGACCGAAGTCCTCAAAGCCCTACGAGAGCTCAATGTAGCTTGGAAGAAGATTGGGCACTACAACATGAAATGCAGGTGGTTACCTGGAATTCCAGGCCATCATGAAGGCATGATTAACAACTCTGTGCATGGAAATCATTGCTTCGGGGACGAGTCTACCATTATTGAAAACGATGGCATCGTAAAATCGCCAAATGTTATTAAGTTTGAAGTTCAGCTCTACAAAACACGCGAAGAGAAGTATTTGCTTGATCTACAGAGGGTTCAAGGCCCACAGTTCCTGTTCCTGGATCTTTGCGCTGCTTTCCTTGCACAGCTCCGAGTCCTCTAA 1551 43.07 MDGPIGRGGGGMDMNLPNYKLGKTLGIGSFGKVKIAEHALTGHKVAIKILNRRKIRNLDMEEKVRREIKILRLFMHPHIIRLYEVIETPADIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVAHRDLKPENLLLDSKSNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSSGARELIPSMLVVDPMKRITIPEIRQHSWFQAHLPRYLAVPPPDTMQQAKKIDEDILQEVIKMGFDRNQLVESLGNRIQNEATVAYYLLLDNRFRVSSGYLGAEFQETMETGFNRMHPGDPTSPAVGGHRLPGYMDYQAMGLRSQFPVERKWALGLQSRAHPREIMTEVLKALRELNVAWKKIGHYNMKCRWLPGIPGHHEGMINNSVHGNHCFGDESTIIENDGIVKSPNVIKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRVL 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35708065 35715438 + Sed0016783.1 Sed04g2163 710766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2163 516 CDD UBA_SnRK1_plant 293 333 - -
Sed04g2163 516 FunFam Non-specific serine/threonine protein kinase 10 98 - -
Sed04g2163 516 Gene3D Kinase associated domain 1, KA1 396 514 - -
Sed04g2163 516 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g2163 516 Gene3D Transferase(Phosphotransferase) domain 1 12 349 - -
Sed04g2163 516 SUPERFAMILY Protein kinase-like (PK-like) 16 286 IPR011009 -
Sed04g2163 516 CDD AMPKA_C 390 513 - -
Sed04g2163 516 ProSiteProfiles Protein kinase domain profile. 19 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g2163 516 Pfam UBA/TS-N domain 293 329 IPR015940 -
Sed04g2163 516 Pfam Protein kinase domain 19 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g2163 516 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 467 515 IPR001772 -
Sed04g2163 516 SUPERFAMILY KA1-like 328 515 IPR028375 -
Sed04g2163 516 CDD STKc_AMPK_alpha 16 271 - -
Sed04g2163 516 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 292 332 IPR015940 -
Sed04g2163 516 FunFam Non-specific serine/threonine protein kinase 10 349 - -
Sed04g2163 516 SMART serkin_6 19 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g2163 516 FunFam Non-specific serine/threonine protein kinase 396 514 - -
Sed04g2163 516 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 18 290 - GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Sed04g2163 516 Pfam Kinase associated domain 1 473 515 IPR001772 -
Sed04g2163 516 SMART uba_6 294 331 IPR015940 -
Sed04g2163 516 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2163 Sed-Chr4:35708065 Sed09g0120 Sed-Chr9:918470 8.10E-292 dispersed
Sed04g2163 Sed-Chr4:35708065 Sed04g2164 Sed-Chr4:35708065 1.60E-202 tandem
Sed04g2163 Sed-Chr4:35708065 Sed09g0119 Sed-Chr9:918470 8.10E-292 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79027 PF00069 Pkinase 1.40E-79 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2163 K07198 - csv:101211720 986.097