Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g2174 | ATGAGTGCCAACCCTAGTACTAGCGGCGGCGGGCCATGTGGGGCATGCAAGTTTTTGAGAAGAAAGTGTGTTCCTGGGTGCATATTCGCTCCTTATTTCGACTCCGATCAAGGCGCTGCCTACTTCGCTGCCGTGCACAAGGTTTTCGGAGCCAGCAACGTCTCGAAGCTCCTCCTTCATATTCCTGTCCACAGGCGTCTTGACGCTGTCGTCACTGTTTGTTACGAGGCTCAGGCTCGCCTCCGAGACCCTATCCACGGTTGCGTCGCTCATATCTTTGCTCTTCAACAACAGGTGGTGAATTTACAAGCCGAGCTGTCGTATCTTCAAGCCCATCTACCATCACTGGAGCTGCCATCACCGTCGCCATCGCACCCACCACCGCCACCTCCTCCGCCAAGTTTTCCAATGGTGGCGGCCTCCTCCTCCTTACCGGGCAGTTACGACTTGTCGTCACTCTTTGCCCCAATGACGACTCAACCTGCATGGGCCATGCATCAGCAGCGGCTTGACCACCACGGGTTCGCTGAAGCCGGGGAGGGCAACCTTCAAGCCTTGGCCTGTGAACTCATTCGTAGACATGGCACTCTGCCGTGCTCCGACGCCTCGTCGTCTCCATCGCTCTCTAAATAA | 633 | 56.4 | MSANPSTSGGGPCGACKFLRRKCVPGCIFAPYFDSDQGAAYFAAVHKVFGASNVSKLLLHIPVHRRLDAVVTVCYEAQARLRDPIHGCVAHIFALQQQVVNLQAELSYLQAHLPSLELPSPSPSHPPPPPPPPSFPMVAASSSLPGSYDLSSLFAPMTTQPAWAMHQQRLDHHGFAEAGEGNLQALACELIRRHGTLPCSDASSSPSLSK | 210 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 35791561 | 35795330 | + | Sed0004990.1 | Sed04g2174 | 710777 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g2174 | 210 | MobiDBLite | consensus disorder prediction | 119 | 138 | - | - | |
Sed04g2174 | 210 | Pfam | Lateral organ boundaries (LOB) domain | 12 | 110 | IPR004883 | - | |
Sed04g2174 | 210 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 8 | 131 | - | GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER) | |
Sed04g2174 | 210 | MobiDBLite | consensus disorder prediction | 117 | 138 | - | - | |
Sed04g2174 | 210 | ProSiteProfiles | LOB domain profile. | 11 | 113 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g1589 | Sed-Chr2:51458567 | Sed04g2174 | Sed-Chr4:35791561 | 5.50E-51 | dispersed | |
Sed04g2174 | Sed-Chr4:35791561 | Sed09g0110 | Sed-Chr9:856195 | 2.10E-44 | dispersed | |
Sed02g0841 | Sed-Chr2:46022558 | Sed04g2174 | Sed-Chr4:35791561 | 1.00E-39 | transposed | |
Sed04g2174 | Sed-Chr4:35791561 | Sed09g0109 | Sed-Chr9:822546 | 3.10E-80 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38222 | PF03195 | LOB | 2.00E-37 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g2174 | K21994 | - | csv:101220603 | 270.011 |