Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2174 ATGAGTGCCAACCCTAGTACTAGCGGCGGCGGGCCATGTGGGGCATGCAAGTTTTTGAGAAGAAAGTGTGTTCCTGGGTGCATATTCGCTCCTTATTTCGACTCCGATCAAGGCGCTGCCTACTTCGCTGCCGTGCACAAGGTTTTCGGAGCCAGCAACGTCTCGAAGCTCCTCCTTCATATTCCTGTCCACAGGCGTCTTGACGCTGTCGTCACTGTTTGTTACGAGGCTCAGGCTCGCCTCCGAGACCCTATCCACGGTTGCGTCGCTCATATCTTTGCTCTTCAACAACAGGTGGTGAATTTACAAGCCGAGCTGTCGTATCTTCAAGCCCATCTACCATCACTGGAGCTGCCATCACCGTCGCCATCGCACCCACCACCGCCACCTCCTCCGCCAAGTTTTCCAATGGTGGCGGCCTCCTCCTCCTTACCGGGCAGTTACGACTTGTCGTCACTCTTTGCCCCAATGACGACTCAACCTGCATGGGCCATGCATCAGCAGCGGCTTGACCACCACGGGTTCGCTGAAGCCGGGGAGGGCAACCTTCAAGCCTTGGCCTGTGAACTCATTCGTAGACATGGCACTCTGCCGTGCTCCGACGCCTCGTCGTCTCCATCGCTCTCTAAATAA 633 56.4 MSANPSTSGGGPCGACKFLRRKCVPGCIFAPYFDSDQGAAYFAAVHKVFGASNVSKLLLHIPVHRRLDAVVTVCYEAQARLRDPIHGCVAHIFALQQQVVNLQAELSYLQAHLPSLELPSPSPSHPPPPPPPPSFPMVAASSSLPGSYDLSSLFAPMTTQPAWAMHQQRLDHHGFAEAGEGNLQALACELIRRHGTLPCSDASSSPSLSK 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35791561 35795330 + Sed0004990.1 Sed04g2174 710777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2174 210 MobiDBLite consensus disorder prediction 119 138 - -
Sed04g2174 210 Pfam Lateral organ boundaries (LOB) domain 12 110 IPR004883 -
Sed04g2174 210 PANTHER LOB DOMAIN CONTAINING PROTEIN 8 131 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Sed04g2174 210 MobiDBLite consensus disorder prediction 117 138 - -
Sed04g2174 210 ProSiteProfiles LOB domain profile. 11 113 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1589 Sed-Chr2:51458567 Sed04g2174 Sed-Chr4:35791561 5.50E-51 dispersed
Sed04g2174 Sed-Chr4:35791561 Sed09g0110 Sed-Chr9:856195 2.10E-44 dispersed
Sed02g0841 Sed-Chr2:46022558 Sed04g2174 Sed-Chr4:35791561 1.00E-39 transposed
Sed04g2174 Sed-Chr4:35791561 Sed09g0109 Sed-Chr9:822546 3.10E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38222 PF03195 LOB 2.00E-37 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2174 K21994 - csv:101220603 270.011