Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2176 ATGGATGGAATTTCACCTCACAATCGCTCTCTTCCTTTCCTTTCCAAAGATCTCCACCTCCACCATGGCCTCTTCCACCACCACCAAAACTCCCACGACGGCGGCGGATCCAAGAGAGACCGCCTGGAGGAGGATCAAAACCCCACCACGGCGGCGGAGGAGAGCCACGAATTATCTAACTCATCTTCCCGACGTCCACGTGGCAGACCGGCCGGTTCAAAAAACAAGCCGAAGCCACCCATTATCATCACTAGAGACAGCGCCAACGCCCTCAGATCCCATCTCATCGAAATCGCCTCCGCCTCCGACATCGTCGACGCCCTCTCCGCCTTCGCACGGAGGCGCCAGCGCGGCGTTTGTATTCTTAGCGCCACCGGAGCCGTCTCCAACGTCACTCTCCGCCAGCCGCCCTCTCCGGGCGCCGCCGCGGTCATGACCTTACACGGCAGATTCGAAATCATCTCCCTCTCCGGCTCCTTCCTCCCTCCACCAGCTCCCCCCGCCGCCTCCGGCCTGACCGTCTACCTCGCCGGCGGCCAGGGGCAGGTCGTTGGCGGAAATGTCGTCGGCCCACTTCTGGCTTCCGGTCCGGTGATTATTATGGCGGCTTCTTTTGGAAACGCGGCGTATGAACGGCTACCCATTGACGATGACGGCGAAACTTCGCCGGCGGCGGAGATGGCTGGACAGGCGGCGGCACCACCGCCGGCTCAATTGTTGGGGGATCCTAATAGTGGATTGTTTCAGAATGTGTTGAATTCTTCGTGCCCATTGCCGATGGAAGGGGCGGCGACGACGGGAGCGGCGGCGTATTGGGGTGGAGGACGGCCACCGTATTGA 840 61.19 MDGISPHNRSLPFLSKDLHLHHGLFHHHQNSHDGGGSKRDRLEEDQNPTTAAEESHELSNSSSRRPRGRPAGSKNKPKPPIIITRDSANALRSHLIEIASASDIVDALSAFARRRQRGVCILSATGAVSNVTLRQPPSPGAAAVMTLHGRFEIISLSGSFLPPPAPPAASGLTVYLAGGQGQVVGGNVVGPLLASGPVIIMAASFGNAAYERLPIDDDGETSPAAEMAGQAAAPPPAQLLGDPNSGLFQNVLNSSCPLPMEGAATTGAAAYWGGGRPPY 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35816589 35817428 + Sed0011675.1 Sed04g2176 710779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2176 279 MobiDBLite consensus disorder prediction 214 240 - -
Sed04g2176 279 MobiDBLite consensus disorder prediction 26 82 - -
Sed04g2176 279 Gene3D - 91 222 - -
Sed04g2176 279 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 32 231 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Sed04g2176 279 ProSiteProfiles PPC domain profile profile. 88 226 IPR005175 -
Sed04g2176 279 CDD DUF296 92 161 IPR005175 -
Sed04g2176 279 MobiDBLite consensus disorder prediction 27 51 - -
Sed04g2176 279 Pfam Plants and Prokaryotes Conserved (PCC) domain 92 205 IPR005175 -
Sed04g2176 279 FunFam AT-hook motif nuclear-localized protein 91 221 - -
Sed04g2176 279 SUPERFAMILY AF0104/ALDC/Ptd012-like 88 219 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2176 Sed-Chr4:35816589 Sed05g0860 Sed-Chr5:6877873 5.40E-72 dispersed
Sed12g0242 Sed-Chr12:1406829 Sed04g2176 Sed-Chr4:35816589 1.20E-17 wgd
Sed02g1587 Sed-Chr2:51429520 Sed04g2176 Sed-Chr4:35816589 5.90E-20 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2176 - - - 0.0