Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2188 ATGGGAAGAGGAAAAGTTGAACTCAAGCGAATAGAGAACAAAATTAATCGACAAGTTACTTTCTCGAAACGCCGAAATGGCCTCCTCAAAAAAGCTTACGAACTCTCCATTCTTTGCGATGCTGAGGTCGCTCTCATCGTCTTCTCCAGCCGAGGCAAGCTCTTTGAATTCGGAAGCGCAGGTACAACCAAAACATTGGAGCGGTACCAACGTTGTTGCTTCTCTTCTCAACACAATTATACTGAACCAGAAACCCAGAATTGGTTCCAGGAAATCTCAAAATTGAAAGCTAAATATGAATCTCTTTGTCGGACTCAGAGGCATTTGCTTGGTGAAGATCTTGGACCATTGAGTGTAAAGGAGCTTCAAAATCTTGAAAAACAACTTGAAATAGCCCTTGCTCAAGCTAGACAAAGGAAGACTCAGATCATGGTTGAGCAGGTGGATTATCTACGCAGGAAGGAGTGCCAACTTGAGGATCTCAACAGAGAGCTTAAGCTCAAGCTTGAGGCAGAGGGACAAAATCTTAAGGCCATCCAAAGTTTTTGGAGCTCTAGCGCTGCTGCTGTTGAACATGGCAACCCCTTCCCATTGCATCTTTCACAAACTAGCCCTATCGAATGCCAACACGAACCCGTCTTACAAATCGGGTACCAAAATTATTTCTCAGAAGAGGGGCCATCTGTCCAAAAGAGCATGGCATGTGAGACAAACTTCATACAAGGATGGGTCATTTGA 738 44.17 MGRGKVELKRIENKINRQVTFSKRRNGLLKKAYELSILCDAEVALIVFSSRGKLFEFGSAGTTKTLERYQRCCFSSQHNYTEPETQNWFQEISKLKAKYESLCRTQRHLLGEDLGPLSVKELQNLEKQLEIALAQARQRKTQIMVEQVDYLRRKECQLEDLNRELKLKLEAEGQNLKAIQSFWSSSAAAVEHGNPFPLHLSQTSPIECQHEPVLQIGYQNYFSEEGPSVQKSMACETNFIQGWVI 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35885375 35889965 - Sed0021213.1 Sed04g2188 710791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2188 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed04g2188 245 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed04g2188 245 Coils Coil 151 171 - -
Sed04g2188 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed04g2188 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed04g2188 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed04g2188 245 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed04g2188 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed04g2188 245 FunFam MADS-box transcription factor 1 13 85 - -
Sed04g2188 245 Coils Coil 119 142 - -
Sed04g2188 245 Pfam K-box region 83 169 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed04g2188 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed04g2188 245 Gene3D - 13 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed04g2188 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 188 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed04g2188 245 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed04g2188 245 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2188 Sed-Chr4:35885375 Sed09g0382 Sed-Chr9:3457690 5.20E-55 dispersed
Sed05g3856 Sed-Chr5:46154305 Sed04g2188 Sed-Chr4:35885375 9.10E-08 transposed
Sed12g0222 Sed-Chr12:1232327 Sed04g2188 Sed-Chr4:35885375 1.80E-30 wgd
Sed04g2188 Sed-Chr4:35885375 Sed09g0101 Sed-Chr9:753468 1.30E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38223 PF01486 K-box 2.00E-28 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2188 K09264 - csv:101219421 404.445