Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2194 ATGGATAATTACGGTTCTTCACCTTCATATCCATACCCCAATCCATATGCATACCCTTCTGCAGCTCCTCCTCCCCAATACCCACCTTCTCCATATCCACCTCCTCCTCATTATGCACATCCAAATTCAGATCCATATGGTCGTCCCCCTTACCCTTACCCGTATAATCCTTCTCAACCCTCTCCATTTGCATATCCCCCATCTCATTCTGGCTCTATGGAGTATGTTCAACATCCGCCTTCGCATTCGGGCCCTCCGCCTTACCCTTATCCTTACCCTGATACCTCATCTACTAATGGTGGTGCCAGGCCATCCATTCAATATCATAACAATTTCCAACCTGGTTCATCCCCATATCAGTATCAAGAACCTAATGCATACCCTCCACCCGAAAGTCAATACCCGCCTCCCCCATCTCGAGTAAATAGCTTCTCTGGCCACTACAGGCATGATAGTCCTGATTCTGTCTCTTCTGCATACCCTCCACCAGAAAGTCAATACCCTCCACCCCCATCACGGGTAAATAGCTACTCTCCATCACGAGTAGATAGCTACTCTGGCCATTACATGAATGATAGCACTGATTCTGTCGCCTCTTCTGCTTATCCGCCTATTGATGACCTTTTATGCAATGTACATTTGTCTGATCATCAACCAACTACCCCTGCATCACCTCCTGGTCCTGCAGCAGCCCCTTTATCTGTACGACCTTCAGCTCCGTTATTGGCAAATTCATCTCAAAGTGCTAGATATGATCGGCATGACCGACTTTATGGCTTTCCGAATTCGTCTTTTTCTAGTTTTGGCACAGGGAATTCAGATCAAATGACTCCGGCCAAGCAACCTTCATTTTCCTATTCAAGCTCATTCAGCGGGCAGTCGCAACATAGTCAGAACTTGCAGATTGTTCGATTGGACAGTAAAGCATCATTGAAAGTTTTGCTGTTACACGGAAACTTAGAAATATGGGTTAATGAGGCCAAGAATCTTCCAAATATGGACATGTTTCACAAAACCTTGGGGGATATGTTTGGGAAATTACCTGGAAAACTTGAAGGACGCATGAGTCCTAAGATCACTAGTGACCCTTACGTATCGATCTCTGTAGCAAATGCAATCATTGGGAGGACTTTTGTTATAAGCAACAGTGAAAATCCTATATGGAGGCAGCATTTCTATGTTCCCGTTGCACATCATGCTGCTGAAGTAGTTTTTTTCGTTAAGGACAGTGATGTTGTTGGTTCACAGCTAATAGGAACCGTAGCTATTCCTGCAGAACACATATATTCGGGGTCTATAGTTGAGGGAACCTTTCCAATCCTACTGAATGGGAAGCCCTGTAAGCCTGGAGCTTCTCTAAACATTTCTATTCAATATACCCCGATGGAGAGGCTTAGTACTTACCATCATGGAGTTGGAGCTGGCCCTGATTATCAGGGAGTTCCCGATACATATTTCCCCCTCAGAAAGGGTGGAGCTGTCACTCTTTATCAAGATGCTCATGTCACAGATGGCCTCCTTCCAAATTTCATTCTTGATAATGGTATGTATTATGTACATGGGAAGTGCTGGCATGACATCTTTGATGCCATACGTCAGGCTCAAAGATTAATTTACATAACTGGTTGGTCGGTGTGGCACAAAGTGAAACTAGTTCGAGATACTGGCTATGGGACAGATTGTACCCTTGGAGATCTCCTGAGATCTAAGTCCCAAGAAGGAGTGAGAGTTTTGCTTCTTGTTTGGGATGATCCCACTTCTCGGAGCATTTTGGGTTATAAAACTGATGGTTTCATGCAAACCCATGATGAGGAAACTCGCCGTTTCTTCAAACACTCCTCTGTGCAAGTGATACTTTGTCCTCGCATGGCTGGAAAACGACATAGCTGGGTTAAGCAGAAGGAAGTTGGAACTATTTATACACACCATCAGAAAACAGTTATTGTGGATGCTGATGCTGGAGATAATAGAAGAAAAATCATAGCTTTTGTTGGAGGGCTCGATTTATGTGACGGGCGGTATGATACACCATCACATCCCATATTTCGGTCACTTGAAACAATACATAAGGATGATTATCACAATCCTACATACACGGGTAGTGTTGTTGGTTGTCCAAGAGAACCGTGGCATGATCTGCACAGCAAAATTGAAGGCCCAGCAGCATATGATGTTTTGACGAACTTTGAGGAACGATGGAGGAAGGCTTCCAAACCTCACGGGATAAAGAAGTTCAAATCATATGATGATGCTTTGCTGCGCGTTGAAAGAATCCATGACATAATTGGAATTTCTGAATCTTACTGCAACAATGAAAATGACCCTGAATCATGGCATGTGCAGATTTTTCGCTCAATTGATTCAAATTCTGTCAAAGGTTTCCCAAAAGAGCCAAAAGATGCCCCAGGCAAGAACCTTGTATGTGGAAAGAATGTGCTGATTGACATGAGTATACACACTGCATATGTGAAAGCCATTCGAGCTGCCCAACATTACATTTATATAGAGAATCAATATTTTATTGGGTCATCCTTCAATTGGAATTCAAACAAAGATATAGGTGCCAATAATTTGATTCCGATGGAAATTGCACTAAAGATTGCTGATAAAATCAAAGCAAGTGAGAGGTTTGCTGTATATATTGTCATCCCCATGTGGCCCGAGGGTGTTCCAACTGCTAATGCCACTCAGAGGATACTATTTTGGCAGCAAAAAACAATGCAAATGATGTATGAAGTAATTTACAAGGCTTTGATGGAGGTTGGTCTTGAGGATACATTCTCACCTCAAGACTATTTGAACTTCTTCTGCCTGGGAAATCGCGAGGCTATGGATGGAGATGATCCTTTATGTTCTGGAAGTCCTAATGCAGAAAACACCCCTCAGGCACTTAGTCGGAAAAGCAGAAGGTTTATGATATACGTTCACTCGAAAGGCATGATAGTTGATGACGAGTTTGTGATTTTGGGATCTGCTAACATCAACCAGAGGTCCATGGAAGGAACAAGAGACACTGAGATTGCTATGGGAGCCTATCAACCTCATTATACATGGGCAAGGAAACTTTCACATCCTCGTGGACAGGTGTACGGATATCGGATGTCGTTGTGGGCGGAGCATACAGGAACGGTCGAAGATTGTTTCAACCAACCGGAGAGCCTGGAGTGCGTCAAAAGAGTTAGAACAATGGGAGAATTAAACTGGAAACAATTTGCTGGAGATGATGTAACAGAGATGAGAGGACACCTTATGAAGTATCCTGTTGAAGTTGATAAAAGAGGGAGAGTAAGATCTCTTCCTGGCCATGAAAATTTTCCAGATGTAGGAGGCAAAATAATTGGTTCATTTCTTGGCATTCAGGAGAATCTCACTATCTAA 3378 43.25 MDNYGSSPSYPYPNPYAYPSAAPPPQYPPSPYPPPPHYAHPNSDPYGRPPYPYPYNPSQPSPFAYPPSHSGSMEYVQHPPSHSGPPPYPYPYPDTSSTNGGARPSIQYHNNFQPGSSPYQYQEPNAYPPPESQYPPPPSRVNSFSGHYRHDSPDSVSSAYPPPESQYPPPPSRVNSYSPSRVDSYSGHYMNDSTDSVASSAYPPIDDLLCNVHLSDHQPTTPASPPGPAAAPLSVRPSAPLLANSSQSARYDRHDRLYGFPNSSFSSFGTGNSDQMTPAKQPSFSYSSSFSGQSQHSQNLQIVRLDSKASLKVLLLHGNLEIWVNEAKNLPNMDMFHKTLGDMFGKLPGKLEGRMSPKITSDPYVSISVANAIIGRTFVISNSENPIWRQHFYVPVAHHAAEVVFFVKDSDVVGSQLIGTVAIPAEHIYSGSIVEGTFPILLNGKPCKPGASLNISIQYTPMERLSTYHHGVGAGPDYQGVPDTYFPLRKGGAVTLYQDAHVTDGLLPNFILDNGMYYVHGKCWHDIFDAIRQAQRLIYITGWSVWHKVKLVRDTGYGTDCTLGDLLRSKSQEGVRVLLLVWDDPTSRSILGYKTDGFMQTHDEETRRFFKHSSVQVILCPRMAGKRHSWVKQKEVGTIYTHHQKTVIVDADAGDNRRKIIAFVGGLDLCDGRYDTPSHPIFRSLETIHKDDYHNPTYTGSVVGCPREPWHDLHSKIEGPAAYDVLTNFEERWRKASKPHGIKKFKSYDDALLRVERIHDIIGISESYCNNENDPESWHVQIFRSIDSNSVKGFPKEPKDAPGKNLVCGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSFNWNSNKDIGANNLIPMEIALKIADKIKASERFAVYIVIPMWPEGVPTANATQRILFWQQKTMQMMYEVIYKALMEVGLEDTFSPQDYLNFFCLGNREAMDGDDPLCSGSPNAENTPQALSRKSRRFMIYVHSKGMIVDDEFVILGSANINQRSMEGTRDTEIAMGAYQPHYTWARKLSHPRGQVYGYRMSLWAEHTGTVEDCFNQPESLECVKRVRTMGELNWKQFAGDDVTEMRGHLMKYPVEVDKRGRVRSLPGHENFPDVGGKIIGSFLGIQENLTI 1125
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35920028 35938024 + Sed0019178.1 Sed04g2194 710797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2194 1125 PANTHER PHOSPHOLIPASE D 315 1113 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Sed04g2194 1125 Gene3D Endonuclease Chain A 795 1021 - -
Sed04g2194 1125 MobiDBLite consensus disorder prediction 94 122 - -
Sed04g2194 1125 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 971 998 IPR001736 GO:0003824(InterPro)
Sed04g2194 1125 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 638 673 IPR001736 GO:0003824(InterPro)
Sed04g2194 1125 ProSiteProfiles C2 domain profile. 296 438 IPR000008 -
Sed04g2194 1125 Pfam Phospholipase D Active site motif 973 998 IPR001736 GO:0003824(InterPro)
Sed04g2194 1125 Pfam Phospholipase D Active site motif 640 673 IPR001736 GO:0003824(InterPro)
Sed04g2194 1125 MobiDBLite consensus disorder prediction 214 235 - -
Sed04g2194 1125 SMART C2_3c 319 437 IPR000008 -
Sed04g2194 1125 Pfam C2 domain 318 439 IPR000008 -
Sed04g2194 1125 SUPERFAMILY Phospholipase D/nuclease 759 1057 - -
Sed04g2194 1125 FunFam Phospholipase D 785 1017 - -
Sed04g2194 1125 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 316 462 IPR035892 -
Sed04g2194 1125 Gene3D Endonuclease Chain A 516 752 - -
Sed04g2194 1125 SUPERFAMILY Phospholipase D/nuclease 479 737 - -
Sed04g2194 1125 MobiDBLite consensus disorder prediction 269 290 - -
Sed04g2194 1125 SMART pld_4 638 673 IPR001736 GO:0003824(InterPro)
Sed04g2194 1125 SMART pld_4 971 998 IPR001736 GO:0003824(InterPro)
Sed04g2194 1125 MobiDBLite consensus disorder prediction 22 191 - -
Sed04g2194 1125 Gene3D C2 domain 313 458 IPR035892 -
Sed04g2194 1125 CDD C2_plant_PLD 312 460 - -
Sed04g2194 1125 MobiDBLite consensus disorder prediction 176 191 - -
Sed04g2194 1125 Pfam Phospholipase D C terminal 1045 1115 IPR024632 -
Sed04g2194 1125 MobiDBLite consensus disorder prediction 123 137 - -
Sed04g2194 1125 MobiDBLite consensus disorder prediction 22 64 - -
Sed04g2194 1125 FunFam Phospholipase D delta 514 751 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0716 Sed-Chr4:5819666 Sed04g2194 Sed-Chr4:35920028 0.00E+00 dispersed
Sed04g0717 Sed-Chr4:5819666 Sed04g2194 Sed-Chr4:35920028 2.90E-254 dispersed
Sed04g2194 Sed-Chr4:35920028 Sed04g2196 Sed-Chr4:35920028 0.00E+00 dispersed
Sed04g2194 Sed-Chr4:35920028 Sed04g2195 Sed-Chr4:35920028 0.00E+00 tandem
Sed04g2194 Sed-Chr4:35920028 Sed09g0096 Sed-Chr9:718036 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2194 K01115 - csv:101218942 1853.95