Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2197 ATGGCCGATATTCGCAAACAGGAACTCGACCACAACGTCGGCTCTCCGGCCACCGACCTCCGCATGAATGACCTCCTTGCCCTCGCTCCCAAGCAGGAGCTTCCCGATTCCGACGACTCCAACCCCCCTCTTACGGCCTCTCCTCTCCCCCCCAGACGAGCTTCCACCAAGGATCGCCACACCAAAGTCGAGGGCCGCGGCCGCCGGATTCGGATCCCGGCCACCTGTGCCGCCAGAATCTTCCAGCTCACTCGAGAGCTCGGCCACAAGTCCGATGGCGAAACCATCCGCTGGCTTCTCGAGCGTGCCGAACCGGCCATCATCGCCGCCACCGGAACCGGTACCATTCCCGCCATCGCCATGTCCGTCAATGGCACCCTCAAAATCCCCACCACCACTTCTCCCTCCAACCAAGACTCCACCGCCGACAATTCCGCCGTCAAGAAGCGCCGCAAGCGCCCCGCCAACAGCGACTACGTCGACGTAGACGACGCCGTCTCCGTCTCCGTCTCCAACGGCCTCGCTCATTCCGGTGCCGGTATTGCCGCCGTGCAGCCGGCTTTCCCGTCGGGGTTCGTTCCAGTGTGGGCCATCCCATCCAACGCCATCATTCCCGGAGCGGTCTTCATGGTTCCGTCCGTGGCTTGCTCCTCCACCCGCCCTCAGCTGTTCTCATTCCCAGCTCCGGCGGCGCCGCTCATCAACACGACGGCGCGGCCTCTTTCCACCGTCCAGTTGAAGCCGGACGGTTCCCACATTCAATTCACCTCCACCGATCAAAGCTCGAGCAGTTCTAGCGCTTCCGCTTCCATGGCCCAATCCGTCATGGCGCCGATCTCGAGCTCCAACGTTCCGGCGACCGGCAAAACGACGACGACGCGGATGCTTAGAGACTTCTCGTTGGAGATATACGATAAGGAAGAGCTTCAATTCATGTCTCGATCCTCTTCAAAGCATTGA 960 61.67 MADIRKQELDHNVGSPATDLRMNDLLALAPKQELPDSDDSNPPLTASPLPPRRASTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIAATGTGTIPAIAMSVNGTLKIPTTTSPSNQDSTADNSAVKKRRKRPANSDYVDVDDAVSVSVSNGLAHSGAGIAAVQPAFPSGFVPVWAIPSNAIIPGAVFMVPSVACSSTRPQLFSFPAPAAPLINTTARPLSTVQLKPDGSHIQFTSTDQSSSSSSASASMAQSVMAPISSSNVPATGKTTTTRMLRDFSLEIYDKEELQFMSRSSSKH 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35942929 35944642 - Sed0016058.1 Sed04g2197 710800

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2197 319 MobiDBLite consensus disorder prediction 144 158 - -
Sed04g2197 319 MobiDBLite consensus disorder prediction 1 69 - -
Sed04g2197 319 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 47 266 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Sed04g2197 319 MobiDBLite consensus disorder prediction 53 69 - -
Sed04g2197 319 ProSiteProfiles TCP domain profile. 56 110 IPR017887 -
Sed04g2197 319 MobiDBLite consensus disorder prediction 130 158 - -
Sed04g2197 319 Pfam TCP family transcription factor 55 145 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2197 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2197 Sed-Chr4:35942929 Sed06g0434 Sed-Chr6:3815520 7.60E-30 dispersed
Sed13g0178 Sed-Chr13:1157559 Sed04g2197 Sed-Chr4:35942929 7.00E-47 transposed
Sed04g2197 Sed-Chr4:35942929 Sed09g0095 Sed-Chr9:716465 3.00E-58 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed07g2387 . 25 228 TCP Transcription Factor Family AT5G23280 63.8 1.1e-60 231.1
Sed04g2781 . 38 242 TCP Transcription Factor Family AT5G23280 58.0 1.4e-55 214.2
Sed03g0942 . 56 255 TCP Transcription Factor Family AT5G23280 59.0 4.1e-55 212.6
Sed04g2197 . 21 318 TCP Transcription Factor Family AT2G45680 52.3 1.4e-69 261.2
Sed06g1538 . 56 171 TCP Transcription Factor Family AT3G47620 78.8 1.7e-41 168.3
Sed08g2057 . 39 140 TCP Transcription Factor Family AT3G47620 81.4 1.1e-38 159.1
Sed08g1502 . 48 300 TCP Transcription Factor Family AT3G27010 55.4 4.5e-59 226.1
Sed06g0434 . 8 269 TCP Transcription Factor Family AT3G27010 53.9 6.5e-58 222.2
Sed07g2387 . 1 227 TCP Transcription Factor Family AT5G08330 58.4 1.2e-56 217.6
Sed03g0942 . 36 261 TCP Transcription Factor Family AT5G08330 58.3 1.6e-56 217.2
Sed04g2781 . 25 239 TCP Transcription Factor Family AT5G08330 56.1 5.1e-55 212.2
Sed13g0592 . 31 378 TCP Transcription Factor Family AT1G53230 52.9 3.6e-82 303.1
Sed06g0853 . 45 205 TCP Transcription Factor Family AT3G02150 54.5 1.1e-37 155.2
Sed06g0854 . 43 203 TCP Transcription Factor Family AT3G02150 54.5 1.1e-37 155.2
Sed06g1441 . 44 153 TCP Transcription Factor Family AT3G02150 70.2 2.5e-37 154.1
Sed04g1559 . 190 399 TCP Transcription Factor Family AT2G31070 50.5 3.7e-41 166.8
Sed13g0592 . 30 215 TCP Transcription Factor Family AT2G31070 53.9 4.1e-40 163.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011535 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38224 PF03634 TCP 1.70E-29 No_clan Sed TF