Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed04g2197 | ATGGCCGATATTCGCAAACAGGAACTCGACCACAACGTCGGCTCTCCGGCCACCGACCTCCGCATGAATGACCTCCTTGCCCTCGCTCCCAAGCAGGAGCTTCCCGATTCCGACGACTCCAACCCCCCTCTTACGGCCTCTCCTCTCCCCCCCAGACGAGCTTCCACCAAGGATCGCCACACCAAAGTCGAGGGCCGCGGCCGCCGGATTCGGATCCCGGCCACCTGTGCCGCCAGAATCTTCCAGCTCACTCGAGAGCTCGGCCACAAGTCCGATGGCGAAACCATCCGCTGGCTTCTCGAGCGTGCCGAACCGGCCATCATCGCCGCCACCGGAACCGGTACCATTCCCGCCATCGCCATGTCCGTCAATGGCACCCTCAAAATCCCCACCACCACTTCTCCCTCCAACCAAGACTCCACCGCCGACAATTCCGCCGTCAAGAAGCGCCGCAAGCGCCCCGCCAACAGCGACTACGTCGACGTAGACGACGCCGTCTCCGTCTCCGTCTCCAACGGCCTCGCTCATTCCGGTGCCGGTATTGCCGCCGTGCAGCCGGCTTTCCCGTCGGGGTTCGTTCCAGTGTGGGCCATCCCATCCAACGCCATCATTCCCGGAGCGGTCTTCATGGTTCCGTCCGTGGCTTGCTCCTCCACCCGCCCTCAGCTGTTCTCATTCCCAGCTCCGGCGGCGCCGCTCATCAACACGACGGCGCGGCCTCTTTCCACCGTCCAGTTGAAGCCGGACGGTTCCCACATTCAATTCACCTCCACCGATCAAAGCTCGAGCAGTTCTAGCGCTTCCGCTTCCATGGCCCAATCCGTCATGGCGCCGATCTCGAGCTCCAACGTTCCGGCGACCGGCAAAACGACGACGACGCGGATGCTTAGAGACTTCTCGTTGGAGATATACGATAAGGAAGAGCTTCAATTCATGTCTCGATCCTCTTCAAAGCATTGA | 960 | 61.67 | MADIRKQELDHNVGSPATDLRMNDLLALAPKQELPDSDDSNPPLTASPLPPRRASTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIAATGTGTIPAIAMSVNGTLKIPTTTSPSNQDSTADNSAVKKRRKRPANSDYVDVDDAVSVSVSNGLAHSGAGIAAVQPAFPSGFVPVWAIPSNAIIPGAVFMVPSVACSSTRPQLFSFPAPAAPLINTTARPLSTVQLKPDGSHIQFTSTDQSSSSSSASASMAQSVMAPISSSNVPATGKTTTTRMLRDFSLEIYDKEELQFMSRSSSKH | 319 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 35942929 | 35944642 | - | Sed0016058.1 | Sed04g2197 | 710800 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed04g2197 | 319 | MobiDBLite | consensus disorder prediction | 144 | 158 | - | - | |
| Sed04g2197 | 319 | MobiDBLite | consensus disorder prediction | 1 | 69 | - | - | |
| Sed04g2197 | 319 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 47 | 266 | IPR005333 | GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER) | |
| Sed04g2197 | 319 | MobiDBLite | consensus disorder prediction | 53 | 69 | - | - | |
| Sed04g2197 | 319 | ProSiteProfiles | TCP domain profile. | 56 | 110 | IPR017887 | - | |
| Sed04g2197 | 319 | MobiDBLite | consensus disorder prediction | 130 | 158 | - | - | |
| Sed04g2197 | 319 | Pfam | TCP family transcription factor | 55 | 145 | IPR017887 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed04g2197 | Sed-Chr4:35942929 | Sed06g0434 | Sed-Chr6:3815520 | 7.60E-30 | dispersed | |
| Sed13g0178 | Sed-Chr13:1157559 | Sed04g2197 | Sed-Chr4:35942929 | 7.00E-47 | transposed | |
| Sed04g2197 | Sed-Chr4:35942929 | Sed09g0095 | Sed-Chr9:716465 | 3.00E-58 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 38224 | PF03634 | TCP | 1.70E-29 | No_clan | Sed | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed04g2197 | - | - | - | 0.0 |