Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2211 ATGAGTTTTGGGGGTTTCCTCGACGGCGGCGGCGGAGGAGGAGGCGGCGGTGGTGCTCGAATCGTAGCCGATTTACCTTACGCGAGCAATAACCCCACTGGCGTCATCGGCGGCGGAAGAAATATGCCGGCCGGCGTAATCGCTCCGCCGCATCTCGTTACCAAATCGATGTTCAACTCTCCCGGACTGTCTCTCGCTCTTACGAACATGGACGGCGGCGGGCAGGGGGATTTTGGTGCCCGGCTGCCCGAGGGTTTCGAGCATAATGTTGGGAGAAGAGGCAGAGAGGAAGAGCACGAGAGTAGATCTGGGAGTGACAACATGGACGGCGGCGGCGGCTCCGGCGACGACCAGGATGCCGCCGACAACCCACCGAAGAAGAAGCGTTACCACCGACACACTCCTCAGCAGATTCAAGATCTCGAATCTGTTTTTAAAGAGTGCCCTCATCCTGATGAGAAACAACGGCTGGAGTTGAGTCGGAGGTTGTGTTTAGAAACCAGGCAAGTTAAGTTTTGGTTCCAAAATCGTCGGACCCAAATGAAGACCCAATTGGAACGCCATGAGAATACTTTGCTTAGACAGGAGAATGATAAGCTTAGAGCTGAGAATATGTCGATTAGAGATGCTATGAGGAATCCTATGTGTTCGAACTGTGGCGGTCCTGCGATTATCGGAGAGATTTCGCTAGAAGAGCAACAGTTGAGGATTGATAATGCTAGGTTGAAGGATGAATTGGACCGGGTTTGTGGGCTTGCTGGGAAGTTTCTTGGCAGACCGATTTCATCGCTGGCTAACTCCATTGCACCTCCATTGCCGAGCTCGAGTCTTGAACTGGGAGTTGGGAGCAATGGATTTGGAAGTTTGACAATGGCAACGTCAATGCCTATGGGGCCGGATTTTGGAGGTGGGTTGTCAGGTAATTTGGCTGTTGTTCAGCCACCTGCGAGGTCAACTCCAGTAGAGCGATCTATGCTACTAGAGCTTGCTTTGGCTGCCATGGATGAGTTGGTTAAAATGGCCCAGACTGATGAGCCTCTTTGGATTGGGAGCTTGGATGGTGGAAAAGAAATACTGAATCAGGAAGAATATATGAGGACATTCACTCCTTGCATCGGCATGAGGCCTAATGGCTTTGTTGCTGAGGCCTCGAGAGAAACTGGGATGGTGATAATCAACAGCTTGGCTCTCGTTGAGACATTGATGGACTCGAATCGATGGGCGGAGATGTTTCCATGCATGATTGCTCGAACTACGACCACCGATGTGATCTCCAGTGGCATGGGTGGAACGAGGAATGGTGCACTTCAACTGATGCACGCGGAGCTTCAAGTGCTTTCACCATTGGTACCGGTTCGGGAAGTCAATTTTCTGCGGTTCTGCAAGCAGCACGCCGAAGGTGTTTGGGCAGTAGTCGATGTATCGGTCGACACTATGAGGGAGACTCAAACTGGTGGTTCCTCATTCATCAACTGCAGAAGGCTTCCTTCTGGGTGTGTTGTTCAAGACATGCCCAATGGATATTCTAAGGTAACGTGGGTGGAGCATGCGGAGTACGATGATAGCCAAGTTCACCAGCTATACCGGCCCCTTCTCAGCTCCGGTACGGGATTTGGAGCACAACGGTGGGTCGCCACCCTTCAACGACAATGCGAATGCCTCGCCATTCTCATGTCATCCACCGTACCAGTCCGAGATCACACCGCCATAACTGCAGGCGGGCGACGGAGCATGCTGAAGCTAGCCCAACGAATGACGGCCAACTTCTGTGCAGGGGTGTGTGCCTCGACGGTGCACAAATGGAACAAGCTGAATGCCGAGAGTGTAGACGAGGACGTCCGTGTGATGACACGGAAGAGTGTGGACGATCCAGGGGAGCCACCAGGCATTGTGTTGAGTGCTGCTACGTCGGTGTGGCTGCCAGTGTCCCCCCAACGGGTCTTTGACTTCCTGAGGGACGAGCGGCTGAGGAGTGAATGGGACATTCTATCCAACGGTGGTCCGATGCAGGAGATGGCCCATATCGCCAAAGGACAAGATCATGGCAACTGCGTCTCTCTATTAAGAGCCAGCGCGATGAATGCAAACCAGAGCAGCATGTTGATTCTTCAAGAGACGTGTATCGATGCGGCCGGATCTCTCGTGGTGTATGCGCCGGTGGACATTCCGGCGATGCACGTCGTGATGAACGGCGGAGATTCGGCCTACGTGGCGCTTCTGCCGTCCGGATTTTCCATAGTGCCCGACGGGGTGCTGAATGGGAGCAGTCCAAGTGGCGGGGATGGCCCACATAGCCAGAAGGGTGGGTCCCTCCTCACCGTTGCATTTCAAATCCTCGTGAATAGCCTCCCTTCGGCCAAGCTCACCGTGGAATCGGTTGAAACCGTCAACAATCTCATCTCCTGCACCGTCCAGAAGATCAAGGCCGCTCTTCAATGTGAACCCTGA 2448 53.59 MSFGGFLDGGGGGGGGGGARIVADLPYASNNPTGVIGGGRNMPAGVIAPPHLVTKSMFNSPGLSLALTNMDGGGQGDFGARLPEGFEHNVGRRGREEEHESRSGSDNMDGGGGSGDDQDAADNPPKKKRYHRHTPQQIQDLESVFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPMCSNCGGPAIIGEISLEEQQLRIDNARLKDELDRVCGLAGKFLGRPISSLANSIAPPLPSSSLELGVGSNGFGSLTMATSMPMGPDFGGGLSGNLAVVQPPARSTPVERSMLLELALAAMDELVKMAQTDEPLWIGSLDGGKEILNQEEYMRTFTPCIGMRPNGFVAEASRETGMVIINSLALVETLMDSNRWAEMFPCMIARTTTTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSVDTMRETQTGGSSFINCRRLPSGCVVQDMPNGYSKVTWVEHAEYDDSQVHQLYRPLLSSGTGFGAQRWVATLQRQCECLAILMSSTVPVRDHTAITAGGRRSMLKLAQRMTANFCAGVCASTVHKWNKLNAESVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRVFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFSIVPDGVLNGSSPSGGDGPHSQKGGSLLTVAFQILVNSLPSAKLTVESVETVNNLISCTVQKIKAALQCEP 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36004141 36009701 + Sed0007040.1 Sed04g2211 710814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2211 815 Coils Coil 178 210 - -
Sed04g2211 815 ProSiteProfiles START domain profile. 319 556 IPR002913 GO:0008289(InterPro)
Sed04g2211 815 CDD START_ArGLABRA2_like 323 552 - -
Sed04g2211 815 FunFam Homeobox-leucine zipper protein HDG1 114 200 - -
Sed04g2211 815 SMART HOX_1 125 188 IPR001356 GO:0003677(InterPro)
Sed04g2211 815 ProSitePatterns 'Homeobox' domain signature. 159 182 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed04g2211 815 MobiDBLite consensus disorder prediction 75 134 - -
Sed04g2211 815 Pfam Homeodomain 127 182 IPR001356 GO:0003677(InterPro)
Sed04g2211 815 MobiDBLite consensus disorder prediction 86 105 - -
Sed04g2211 815 FunFam Homeobox-leucine zipper protein GLABRA 2 328 552 - -
Sed04g2211 815 SUPERFAMILY Bet v1-like 318 553 - -
Sed04g2211 815 CDD homeodomain 127 184 IPR001356 GO:0003677(InterPro)
Sed04g2211 815 SUPERFAMILY Bet v1-like 581 808 - -
Sed04g2211 815 Pfam START domain 328 553 IPR002913 GO:0008289(InterPro)
Sed04g2211 815 ProSiteProfiles 'Homeobox' domain profile. 124 184 IPR001356 GO:0003677(InterPro)
Sed04g2211 815 SMART START_1 328 553 IPR002913 GO:0008289(InterPro)
Sed04g2211 815 Gene3D - 114 200 - -
Sed04g2211 815 SUPERFAMILY Homeodomain-like 107 184 IPR009057 -
Sed04g2211 815 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 114 814 IPR042160 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2211 Sed-Chr4:36004141 Sed04g2213 Sed-Chr4:36004141 0.00E+00 dispersed
Sed04g2211 Sed-Chr4:36004141 Sed04g2212 Sed-Chr4:36004141 0.00E+00 tandem
Sed12g0199 Sed-Chr12:1112182 Sed04g2211 Sed-Chr4:36004141 3.90E-250 wgd
Sed04g2211 Sed-Chr4:36004141 Sed09g0079 Sed-Chr9:618782 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38225 PF01852 START 9.00E-58 CL0209 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2211 K09338 - csv:101222248 1436.78