Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2212 ATGAGTTTTGGGGGTTTCCTCGACGGCGGCGGCGGAGGAGGAGGCGGCGGTGGTGCTCGAATCGTAGCCGATTTACCTTACGCGAGCAATAACCCCACTGGCGTCATCGGCGGCGGAAGAAATATGCCGGCCGGCGTAATCGCTCCGCCGCATCTCGTTACCAAATCGATGTTCAACTCTCCCGGACTGTCTCTCGCTCTTACGAACATGGACGGCGGCGGGCAGGGGGATTTTGGTGCCCGGCTGCCCGAGGGTTTCGAGCATAATGTTGGGAGAAGAGGCAGAGAGGAAGAGCACGAGAGTAGATCTGGGAGTGACAACATGGACGGCGGCGGCGGCTCCGGCGACGACCAGGATGCCGCCGACAACCCACCGAAGAAGAAGCGTTACCACCGACACACTCCTCAGCAGATTCAAGATCTCGAATCTGTTTTTAAAGAGTGCCCTCATCCTGATGAGAAACAACGGCTGGAGTTGAGTCGGAGGTTGTGTTTAGAAACCAGGCAAGTTAAGTTTTGGTTCCAAAATCGTCGGACCCAAATGAAGACCCAATTGGAACGCCATGAGAATACTTTGCTTAGACAGGAGAATGATAAGCTTAGAGCTGAGAATATGTCGATTAGAGATGCTATGAGGAATCCTATGTGTTCGAACTGTGGCGGTCCTGCGATTATCGGAGAGATTTCGCTAGAAGAGCAACAGTTGAGGATTGATAATGCTAGGTTGAAGGATGAATTGGACCGGGTTTGTGGGCTTGCTGGGAAGTTTCTTGGCAGACCGATTTCATCGCTGGCTAACTCCATTGCACCTCCATTGCCGAGCTCGAGTCTTGAACTGGGAGTTGGGAGCAATGGATTTGGAAGTTTGACAATGGCAACGTCAATGCCTATGGGGCCGGATTTTGGAGGTGGGTTGTCAGGTAATTTGGCTGTTGTTCAGCCACCTGCGAGGTCAACTCCAGTAGAGCGATCTATGCTACTAGAGCTTGCTTTGGCTGCCATGGATGAGTTGGTTAAAATGGCCCAGACTGATGAGCCTCTTTGGATTGGGAGCTTGGATGGTGGAAAAGAAATACTGAATCAGGAAGAATATATGAGGACATTCACTCCTTGCATCGGCATGAGGCCTAATGGCTTTGTTGCTGAGGCCTCGAGAGAAACTGGGATGGTGATAATCAACAGCTTGGCTCTCGTTGAGACATTGATGGACTCGAATCGATGGGCGGAGATGTTTCCATGCATGATTGCTCGAACTACGACCACCGATGTGATCTCCAGTGGCATGGGTGGAACGAGGAATGGTGCACTTCAACTGATGCACGCGGAGCTTCAAGTGCTTTCACCATTGGTACCGGTTCGGGAAGTCAATTTTCTGCGGTTCTGCAAGCAGCACGCCGAAGGTGTTTGGGCAGTAGTCGATGTATCGGTCGACACTATGAGGGAGACTCAAACTGGTGGTTCCTCATTCATCAACTGCAGAAGGCTTCCTTCTGGGTGTGTTGTTCAAGACATGCCCAATGGATATTCTAAGGTAACGTGGGTGGAGCATGCGGAGTACGATGATAGCCAAGTTCACCAGCTATACCGGCCCCTTCTCAGCTCCGGTACGGGATTTGGAGCACAACGGTGGGTCGCCACCCTTCAACGACAATGCGAATGCCTCGCCATTCTCATGTCATCCACCGTACCAGTCCGAGATCACACCGCCATAACTGCAGGCGGGCGACGGAGCATGCTGAAGCTAGCCCAACGAATGACGGCCAACTTCTGTGCAGGGGTGTGTGCCTCGACGGTGCACAAATGGAACAAGCTGAATGCCGAGAGTGTAGACGAGGACGTCCGTGTGATGACACGGAAGAGTGTGGACGATCCAGGGGAGCCACCAGGCATTGTGTTGAGTGCTGCTACGTCGGTGTGGCTGCCAGTGTCCCCCCAACGGGTCTTTGACTTCCTGAGGGACGAGCGGCTGAGGAGTGAATGGGACATTCTATCCAACGGTGGTCCGATGCAGGAGATGGCCCATATCGCCAAAGGACAAGATCATGGCAACTGCGTCTCTCTATTAAGAGCCAGCGTATTATTTCTCTCTTTACTACAAAACTCTTTTTTTTTTCTTTTTTGGTTTATTTTTGTTTCTCTCTCTACCTGA 2148 52.05 MSFGGFLDGGGGGGGGGGARIVADLPYASNNPTGVIGGGRNMPAGVIAPPHLVTKSMFNSPGLSLALTNMDGGGQGDFGARLPEGFEHNVGRRGREEEHESRSGSDNMDGGGGSGDDQDAADNPPKKKRYHRHTPQQIQDLESVFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPMCSNCGGPAIIGEISLEEQQLRIDNARLKDELDRVCGLAGKFLGRPISSLANSIAPPLPSSSLELGVGSNGFGSLTMATSMPMGPDFGGGLSGNLAVVQPPARSTPVERSMLLELALAAMDELVKMAQTDEPLWIGSLDGGKEILNQEEYMRTFTPCIGMRPNGFVAEASRETGMVIINSLALVETLMDSNRWAEMFPCMIARTTTTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSVDTMRETQTGGSSFINCRRLPSGCVVQDMPNGYSKVTWVEHAEYDDSQVHQLYRPLLSSGTGFGAQRWVATLQRQCECLAILMSSTVPVRDHTAITAGGRRSMLKLAQRMTANFCAGVCASTVHKWNKLNAESVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRVFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASVLFLSLLQNSFFFLFWFIFVSLST 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36004141 36009701 + Sed0007040.2 Sed04g2212 710815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2212 715 Coils Coil 178 210 - -
Sed04g2212 715 ProSiteProfiles START domain profile. 319 556 IPR002913 GO:0008289(InterPro)
Sed04g2212 715 CDD START_ArGLABRA2_like 323 552 - -
Sed04g2212 715 SUPERFAMILY Homeodomain-like 107 184 IPR009057 -
Sed04g2212 715 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 114 691 IPR042160 -
Sed04g2212 715 SMART HOX_1 125 188 IPR001356 GO:0003677(InterPro)
Sed04g2212 715 FunFam Homeobox-leucine zipper protein GLABRA 2 328 552 - -
Sed04g2212 715 SUPERFAMILY Bet v1-like 581 704 - -
Sed04g2212 715 ProSitePatterns 'Homeobox' domain signature. 159 182 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed04g2212 715 MobiDBLite consensus disorder prediction 75 134 - -
Sed04g2212 715 MobiDBLite consensus disorder prediction 86 105 - -
Sed04g2212 715 Pfam Homeodomain 127 182 IPR001356 GO:0003677(InterPro)
Sed04g2212 715 Pfam START domain 328 553 IPR002913 GO:0008289(InterPro)
Sed04g2212 715 SUPERFAMILY Bet v1-like 318 553 - -
Sed04g2212 715 CDD homeodomain 127 184 IPR001356 GO:0003677(InterPro)
Sed04g2212 715 FunFam Homeobox-leucine zipper protein HDG1 114 200 - -
Sed04g2212 715 Gene3D - 114 200 - -
Sed04g2212 715 ProSiteProfiles 'Homeobox' domain profile. 124 184 IPR001356 GO:0003677(InterPro)
Sed04g2212 715 SMART START_1 328 553 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2212 Sed-Chr4:36004141 Sed04g2215 Sed-Chr4:36004141 0.00E+00 dispersed
Sed04g2211 Sed-Chr4:36004141 Sed04g2212 Sed-Chr4:36004141 0.00E+00 tandem
Sed04g2212 Sed-Chr4:36004141 Sed04g2213 Sed-Chr4:36004141 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38226 PF01852 START 7.00E-58 CL0209 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2212 K09338 - csv:101222248 1224.92