Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2214 ATGTCGATTAGAGATGCTATGAGGAATCCTATGTGTTCGAACTGTGGCGGTCCTGCGATTATCGGAGAGATTTCGCTAGAAGAGCAACAGTTGAGGATTGATAATGCTAGGTTGAAGGATGAATTGGACCGGGTTTGTGGGCTTGCTGGGAAGTTTCTTGGCAGACCGATTTCATCGCTGGCTAACTCCATTGCACCTCCATTGCCGAGCTCGAGTCTTGAACTGGGAGTTGGGAGCAATGGATTTGGAAGTTTGACAATGGCAACGTCAATGCCTATGGGGCCGGATTTTGGAGGTGGGTTGTCAGGTAATTTGGCTGTTGTTCAGCCACCTGCGAGGTCAACTCCAGTAGAGCGATCTATGCTACTAGAGCTTGCTTTGGCTGCCATGGATGAGTTGGTTAAAATGGCCCAGACTGATGAGCCTCTTTGGATTGGGAGCTTGGATGGTGGAAAAGAAATACTGAATCAGGAAGAATATATGAGGACATTCACTCCTTGCATCGGCATGAGGCCTAATGGCTTTGTTGCTGAGGCCTCGAGAGAAACTGGGATGGTGATAATCAACAGCTTGGCTCTCGTTGAGACATTGATGGACTCGAATCGATGGGCGGAGATGTTTCCATGCATGATTGCTCGAACTACGACCACCGATGTGATCTCCAGTGGCATGGGTGGAACGAGGAATGGTGCACTTCAACTGATGCACGCGGAGCTTCAAGTGCTTTCACCATTGGTACCGGTTCGGGAAGTCAATTTTCTGCGGTTCTGCAAGCAGCACGCCGAAGGTGTTTGGGCAGTAGTCGATGTATCGGTCGACACTATGAGGGAGACTCAAACTGGTGGTTCCTCATTCATCAACTGCAGAAGGCTTCCTTCTGGGTGTGTTGTTCAAGACATGCCCAATGGATATTCTAAGGTAACGTGGGTGGAGCATGCGGAGTACGATGATAGCCAAGTTCACCAGCTATACCGGCCCCTTCTCAGCTCCGGTACGGGATTTGGAGCACAACGGTGGGTCGCCACCCTTCAACGACAATGCGAATGCCTCGCCATTCTCATGTCATCCACCGTACCAGTCCGAGATCACACCGCCATAACTGCAGGCGGGCGACGGAGCATGCTGAAGCTAGCCCAACGAATGACGGCCAACTTCTGTGCAGGGGTGTGTGCCTCGACGGTGCACAAATGGAACAAGCTGAATGCCGAGAGTGTAGACGAGGACGTCCGTGTGATGACACGGAAGAGTGTGGACGATCCAGGGGAGCCACCAGGCATTGTGTTGAGTGCTGCTACGTCGGTGTGGCTGCCAGTGTCCCCCCAACGGGTCTTTGACTTCCTGAGGGACGAGCGGCTGAGGAGTGAATGGGACATTCTATCCAACGGTGGTCCGATGCAGGAGATGGCCCATATCGCCAAAGGACAAGATCATGGCAACTGCGTCTCTCTATTAAGAGCCAGCGCGATGAATGCAAACCAGAGCAGCATGTTGATTCTTCAAGAGACGTGTATCGATGCGGCCGGATCTCTCGTGGTGTATGCGCCGGTGGACATTCCGGCGATGCACGTCGTGATGAACGGCGGAGATTCGGCCTACGTGGCGCTTCTGCCGTCCGGATTTTCCATAGTGCCCGACGGGGTGCTGAATGGGAGCAGTCCAAGTGGCGGGGATGGCCCACATAGCCAGAAGGGTGGGTCCCTCCTCACCGTTGCATTTCAAATCCTCGTGAATAGCCTCCCTTCGGCCAAGCTCACCGTGGAATCGGTTGAAACCGTCAACAATCTCATCTCCTGCACCGTCCAGAAGATCAAGGCCGCTCTTCAATGTGAACCCTGA 1836 53.16 MSIRDAMRNPMCSNCGGPAIIGEISLEEQQLRIDNARLKDELDRVCGLAGKFLGRPISSLANSIAPPLPSSSLELGVGSNGFGSLTMATSMPMGPDFGGGLSGNLAVVQPPARSTPVERSMLLELALAAMDELVKMAQTDEPLWIGSLDGGKEILNQEEYMRTFTPCIGMRPNGFVAEASRETGMVIINSLALVETLMDSNRWAEMFPCMIARTTTTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSVDTMRETQTGGSSFINCRRLPSGCVVQDMPNGYSKVTWVEHAEYDDSQVHQLYRPLLSSGTGFGAQRWVATLQRQCECLAILMSSTVPVRDHTAITAGGRRSMLKLAQRMTANFCAGVCASTVHKWNKLNAESVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRVFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFSIVPDGVLNGSSPSGGDGPHSQKGGSLLTVAFQILVNSLPSAKLTVESVETVNNLISCTVQKIKAALQCEP 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36004141 36009701 + Sed0007040.4 Sed04g2214 710817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2214 611 SMART START_1 124 349 IPR002913 GO:0008289(InterPro)
Sed04g2214 611 SUPERFAMILY Bet v1-like 114 349 - -
Sed04g2214 611 ProSiteProfiles START domain profile. 115 352 IPR002913 GO:0008289(InterPro)
Sed04g2214 611 SUPERFAMILY Bet v1-like 377 604 - -
Sed04g2214 611 CDD START_ArGLABRA2_like 119 348 - -
Sed04g2214 611 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 1 610 IPR042160 -
Sed04g2214 611 Pfam START domain 124 349 IPR002913 GO:0008289(InterPro)
Sed04g2214 611 FunFam Homeobox-leucine zipper protein GLABRA 2 124 348 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2214 Sed-Chr4:36004141 Sed04g2216 Sed-Chr4:36004141 0.00E+00 dispersed
Sed04g2213 Sed-Chr4:36004141 Sed04g2214 Sed-Chr4:36004141 0.00E+00 tandem
Sed04g2214 Sed-Chr4:36004141 Sed04g2215 Sed-Chr4:36004141 3.90E-285 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2214 K09338 - csv:101222248 1134.01