Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2215 ATGGACGGCGGCGGGCAGGGGGATTTTGGTGCCCGGCTGCCCGAGGGTTTCGAGCATAATGTTGGGAGAAGAGGCAGAGAGGAAGAGCACGAGAGTAGATCTGGGAGTGACAACATGGACGGCGGCGGCGGCTCCGGCGACGACCAGGATGCCGCCGACAACCCACCGAAGAAGAAGCGTTACCACCGACACACTCCTCAGCAGATTCAAGATCTCGAATCTGTTTTTAAAGAGTGCCCTCATCCTGATGAGAAACAACGGCTGGAGTTGAGTCGGAGGTTGTGTTTAGAAACCAGGCAAGTTAAGTTTTGGTTCCAAAATCGTCGGACCCAAATGAAGACCCAATTGGAACGCCATGAGAATACTTTGCTTAGACAGGAGAATGATAAGCTTAGAGCTGAGAATATGTCGATTAGAGATGCTATGAGGAATCCTATGTGTTCGAACTGTGGCGGTCCTGCGATTATCGGAGAGATTTCGCTAGAAGAGCAACAGTTGAGGATTGATAATGCTAGGTTGAAGGATGAATTGGACCGGGTTTGTGGGCTTGCTGGGAAGTTTCTTGGCAGACCGATTTCATCGCTGGCTAACTCCATTGCACCTCCATTGCCGAGCTCGAGTCTTGAACTGGGAGTTGGGAGCAATGGATTTGGAAGTTTGACAATGGCAACGTCAATGCCTATGGGGCCGGATTTTGGAGGTGGGTTGTCAGGTAATTTGGCTGTTGTTCAGCCACCTGCGAGGTCAACTCCAGTAGAGCGATCTATGCTACTAGAGCTTGCTTTGGCTGCCATGGATGAGTTGGTTAAAATGGCCCAGACTGATGAGCCTCTTTGGATTGGGAGCTTGGATGGTGGAAAAGAAATACTGAATCAGGAAGAATATATGAGGACATTCACTCCTTGCATCGGCATGAGGCCTAATGGCTTTGTTGCTGAGGCCTCGAGAGAAACTGGGATGGTGATAATCAACAGCTTGGCTCTCGTTGAGACATTGATGGACTCGAATCGATGGGCGGAGATGTTTCCATGCATGATTGCTCGAACTACGACCACCGATGTGATCTCCAGTGGCATGGGTGGAACGAGGAATGGTGCACTTCAACTGATGCACGCGGAGCTTCAAGTGCTTTCACCATTGGTACCGGTTCGGGAAGTCAATTTTCTGCGGTTCTGCAAGCAGCACGCCGAAGGTGTTTGGGCAGTAGTCGATGTATCGGTCGACACTATGAGGGAGACTCAAACTGGTGGTTCCTCATTCATCAACTGCAGAAGGCTTCCTTCTGGGTGTGTTGTTCAAGACATGCCCAATGGATATTCTAAGGTAACGTGGGTGGAGCATGCGGAGTACGATGATAGCCAAGTTCACCAGCTATACCGGCCCCTTCTCAGCTCCGGTACGGGATTTGGAGCACAACGGTGGGTCGCCACCCTTCAACGACAATGCGAATGCCTCGCCATTCTCATGTCATCCACCGTACCAGTCCGAGATCACACCGCCATAACTGCAGGCGGGCGACGGAGCATGCTGAAGCTAGCCCAACGAATGACGGCCAACTTCTGTGCAGGGGTGTGTGCCTCGACGGTGCACAAATGGAACAAGCTGAATGCCGAGAGTGTAGACGAGGACGTCCGTGTGATGACACGGAAGAGTGTGGACGATCCAGGGGAGCCACCAGGCATTGTGTTGAGTGCTGCTACGTCGGTGTGGCTGCCAGTGTCCCCCCAACGGGTCTTTGACTTCCTGAGGGACGAGCGGCTGAGGAGTGAATGGGACATTCTATCCAACGGTGGTCCGATGCAGGAGATGGCCCATATCGCCAAAGGACAAGATCATGGCAACTGCGTCTCTCTATTAAGAGCCAGCGTATTATTTCTCTCTTTACTACAAAACTCTTTTTTTTTTCTTTTTTGGTTTATTTTTGTTTCTCTCTCTACCTGA 1941 51.26 MDGGGQGDFGARLPEGFEHNVGRRGREEEHESRSGSDNMDGGGGSGDDQDAADNPPKKKRYHRHTPQQIQDLESVFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPMCSNCGGPAIIGEISLEEQQLRIDNARLKDELDRVCGLAGKFLGRPISSLANSIAPPLPSSSLELGVGSNGFGSLTMATSMPMGPDFGGGLSGNLAVVQPPARSTPVERSMLLELALAAMDELVKMAQTDEPLWIGSLDGGKEILNQEEYMRTFTPCIGMRPNGFVAEASRETGMVIINSLALVETLMDSNRWAEMFPCMIARTTTTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSVDTMRETQTGGSSFINCRRLPSGCVVQDMPNGYSKVTWVEHAEYDDSQVHQLYRPLLSSGTGFGAQRWVATLQRQCECLAILMSSTVPVRDHTAITAGGRRSMLKLAQRMTANFCAGVCASTVHKWNKLNAESVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRVFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASVLFLSLLQNSFFFLFWFIFVSLST 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36004141 36009701 + Sed0007040.5 Sed04g2215 710818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2215 646 SUPERFAMILY Homeodomain-like 38 115 IPR009057 -
Sed04g2215 646 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 45 622 IPR042160 -
Sed04g2215 646 SMART START_1 259 484 IPR002913 GO:0008289(InterPro)
Sed04g2215 646 SMART HOX_1 56 119 IPR001356 GO:0003677(InterPro)
Sed04g2215 646 MobiDBLite consensus disorder prediction 1 65 - -
Sed04g2215 646 Coils Coil 109 141 - -
Sed04g2215 646 Pfam START domain 259 484 IPR002913 GO:0008289(InterPro)
Sed04g2215 646 CDD START_ArGLABRA2_like 254 483 - -
Sed04g2215 646 CDD homeodomain 58 115 IPR001356 GO:0003677(InterPro)
Sed04g2215 646 FunFam Homeobox-leucine zipper protein GLABRA 2 259 483 - -
Sed04g2215 646 Gene3D - 45 131 - -
Sed04g2215 646 Pfam Homeodomain 58 113 IPR001356 GO:0003677(InterPro)
Sed04g2215 646 ProSitePatterns 'Homeobox' domain signature. 90 113 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed04g2215 646 MobiDBLite consensus disorder prediction 17 36 - -
Sed04g2215 646 SUPERFAMILY Bet v1-like 249 484 - -
Sed04g2215 646 SUPERFAMILY Bet v1-like 512 635 - -
Sed04g2215 646 FunFam Homeobox-leucine zipper protein HDG1 45 131 - -
Sed04g2215 646 ProSiteProfiles START domain profile. 250 487 IPR002913 GO:0008289(InterPro)
Sed04g2215 646 ProSiteProfiles 'Homeobox' domain profile. 55 115 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2212 Sed-Chr4:36004141 Sed04g2215 Sed-Chr4:36004141 0.00E+00 dispersed
Sed04g2215 Sed-Chr4:36004141 Sed09g0079 Sed-Chr9:618782 0.00E+00 dispersed
Sed04g2214 Sed-Chr4:36004141 Sed04g2215 Sed-Chr4:36004141 3.90E-285 tandem
Sed04g2215 Sed-Chr4:36004141 Sed04g2216 Sed-Chr4:36004141 5.40E-285 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38228 PF01852 START 5.70E-58 CL0209 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2215 K09338 - csv:101222248 1146.72