Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2217 ATGAAGACCCAATTGGAACGCCATGAGAATACTTTGCTTAGACAGGAGAATGATAAGCTTAGAGCTGAGAATATGTCGATTAGAGATGCTATGAGGAATCCTATGTGTTCGAACTGTGGCGGTCCTGCGATTATCGGAGAGATTTCGCTAGAAGAGCAACAGTTGAGGATTGATAATGCTAGGTTGAAGGATGAATTGGACCGGGTTTGTGGGCTTGCTGGGAAGTTTCTTGGCAGACCGATTTCATCGCTGGCTAACTCCATTGCACCTCCATTGCCGAGCTCGAGTCTTGAACTGGGAGTTGGGAGCAATGGATTTGGAAGTTTGACAATGGCAACGTCAATGCCTATGGGGCCGGATTTTGGAGGTGGGTTGTCAGGTAATTTGGCTGTTGTTCAGCCACCTGCGAGGTCAACTCCAGTAGAGCGATCTATGCTACTAGAGCTTGCTTTGGCTGCCATGGATGAGTTGGTTAAAATGGCCCAGACTGATGAGCCTCTTTGGATTGGGAGCTTGGATGGTGGAAAAGAAATACTGAATCAGGAAGAATATATGAGGACATTCACTCCTTGCATCGGCATGAGGCCTAATGGCTTTGTTGCTGAGGCCTCGAGAGAAACTGGGATGGTGATAATCAACAGCTTGGCTCTCGTTGAGACATTGATGGACTCGAATCGATGGGCGGAGATGTTTCCATGCATGATTGCTCGAACTACGACCACCGATGTGATCTCCAGTGGCATGGGTGGAACGAGGAATGGTGCACTTCAACTGATGCACGCGGAGCTTCAAGTGCTTTCACCATTGGTACCGGTTCGGGAAGTCAATTTTCTGCGGTTCTGCAAGCAGCACGCCGAAGGTGTTTGGGCAGTAGTCGATGTATCGGTCGACACTATGAGGGAGACTCAAACTGGTGGTTCCTCATTCATCAACTGCAGAAGGCTTCCTTCTGGGTGTGTTGTTCAAGACATGCCCAATGGATATTCTAAGGTAACGTGGGTGGAGCATGCGGAGTACGATGATAGCCAAGTTCACCAGCTATACCGGCCCCTTCTCAGCTCCGGTACGGGATTTGGAGCACAACGGTGGGTCGCCACCCTTCAACGACAATGCGAATGCCTCGCCATTCTCATGTCATCCACCGTACCAGTCCGAGATCACACCGCCATAACTGCAGGCGGGCGACGGAGCATGCTGAAGCTAGCCCAACGAATGACGGCCAACTTCTGTGCAGGGGTGTGTGCCTCGACGGTGCACAAATGGAACAAGCTGAATGCCGAGAGTGTAGACGAGGACGTCCGTGTGATGACACGGAAGAGTGTGGACGATCCAGGGGAGCCACCAGGCATTGTGTTGAGTGCTGCTACGTCGGTGTGGCTGCCAGTGTCCCCCCAACGGGTCTTTGACTTCCTGAGGGACGAGCGGCTGAGGAGTGAATGGGACATTCTATCCAACGGTGGTCCGATGCAGGAGATGGCCCATATCGCCAAAGGACAAGATCATGGCAACTGCGTCTCTCTATTAAGAGCCAGCGCGATGAATGCAAACCAGAGCAGCATGTTGATTCTTCAAGAGACGTGTATCGATGCGGCCGGATCTCTCGTGGTGTATGCGCCGGTGGACATTCCGGCGATGCACGTCGTGATGAACGGCGGAGATTCGGCCTACGTGGCGCTTCTGCCGTCCGGATTTTCCATAGTGCCCGACGGGGTGCTGAATGGGAGCAGTCCAAGTGGCGGGGATGGCCCACATAGCCAGAAGGGTGGGTCCCTCCTCACCGTTGCATTTCAAATCCTCGTGAATAGCCTCCCTTCGGCCAAGCTCACCGTGGAATCGGTTGAAACCGTCAACAATCTCATCTCCTGCACCGTCCAGAAGATCAAGGCCGCTCTTCAATGTGAACCCTGA 1908 52.67 MKTQLERHENTLLRQENDKLRAENMSIRDAMRNPMCSNCGGPAIIGEISLEEQQLRIDNARLKDELDRVCGLAGKFLGRPISSLANSIAPPLPSSSLELGVGSNGFGSLTMATSMPMGPDFGGGLSGNLAVVQPPARSTPVERSMLLELALAAMDELVKMAQTDEPLWIGSLDGGKEILNQEEYMRTFTPCIGMRPNGFVAEASRETGMVIINSLALVETLMDSNRWAEMFPCMIARTTTTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSVDTMRETQTGGSSFINCRRLPSGCVVQDMPNGYSKVTWVEHAEYDDSQVHQLYRPLLSSGTGFGAQRWVATLQRQCECLAILMSSTVPVRDHTAITAGGRRSMLKLAQRMTANFCAGVCASTVHKWNKLNAESVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRVFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFSIVPDGVLNGSSPSGGDGPHSQKGGSLLTVAFQILVNSLPSAKLTVESVETVNNLISCTVQKIKAALQCEP 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36004141 36009701 + Sed0007040.7 Sed04g2217 710820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2217 635 SMART START_1 148 373 IPR002913 GO:0008289(InterPro)
Sed04g2217 635 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 1 634 IPR042160 -
Sed04g2217 635 SUPERFAMILY Bet v1-like 138 373 - -
Sed04g2217 635 FunFam Homeobox-leucine zipper protein GLABRA 2 148 372 - -
Sed04g2217 635 CDD START_ArGLABRA2_like 143 372 - -
Sed04g2217 635 Pfam START domain 148 373 IPR002913 GO:0008289(InterPro)
Sed04g2217 635 Coils Coil 5 30 - -
Sed04g2217 635 ProSiteProfiles START domain profile. 139 376 IPR002913 GO:0008289(InterPro)
Sed04g2217 635 SUPERFAMILY Bet v1-like 401 628 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2217 Sed-Chr4:36004141 Sed09g0079 Sed-Chr9:618782 0.00E+00 dispersed
Sed04g2216 Sed-Chr4:36004141 Sed04g2217 Sed-Chr4:36004141 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2217 K09338 - csv:101222248 1181.01