Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2231 ATGGATCGAAGGGACCCGATGGCGTTATCGGGGTCACAGTCGTTCTATATGCAGAGGGGAATGAACAATTCTGGCCCTGGAACACAGGGCATGCGTTCCTCAACTAACCCTAATCTTGCATACCAGACCAATACTGGAGGTAACAATGTTGGATCAGGGCTGCCAATGGACCCTAACCCTCCCATTTCACCTTATGGTGCCAATGTAGGGCCTCCATCCGGTGGGGTGGTTGCGACCGAGCCCATGAAACGGAAGCGAGGCCGGCCTCGCAAGTATGGAACCGAAGGGACTGTGTCTTTGGCACTGTCTCCCTCCCCATCTGCTCCTAATTCAGCCCCTTTAGCTTCTTCGCCGAAGCGAGGACGGGGACGGCCTCCGGGCTCCGGAAAGAAGCAACAATTAGCTTCTCTTGGTGAAACACTTTCTGGGTCTGCTGGCATGGGTTTTACTCCACATGTTATCACCATTGGAATAGGAGAAGATATCGGTGCCAAAATTATGTCATTTTCTCAGCAGGGACCAAGAGTTGTATGCATCTTGTCAGCAAATGGTGCTGTCTCCACTGTAACTCTTCGTCAGCCTTCGACTTCGGGTGGCACTGTGACTTATGAGGGGCGTTTTGAGATAATATGTCTGTCGGGCTCATATTCTCTTGGAGAAACTGCTGGCTCTAGGAACCGCGCTGGTGGTCTGAGTGTCTCCCTTGCCAGCCCCGATGGTCGTGTTGTCGGCGGTGGAGTAGGAGGAGCACTTATTGCGGCAACCCCAGTTCAGGTGATAGTAGGGAGCTTCATGTGGGGCAGTTCAAAGTCAAAGTACAAAAAGAGGGAAGCGATAGAAGGTGTGATAGATTCGGATCATCAGGCGGTAGATCATGCAGTTGCGATGGCGAATGTGCAGCAGAATCAGAATCTGACTCCGACCTCGGTGAGTATGTGGCCGTCCTCGCAGTCTTTGGACATGCGCAATGCCCACATGGACATCGATCTGATGCGTGGGTAA 1002 52.5 MDRRDPMALSGSQSFYMQRGMNNSGPGTQGMRSSTNPNLAYQTNTGGNNVGSGLPMDPNPPISPYGANVGPPSGGVVATEPMKRKRGRPRKYGTEGTVSLALSPSPSAPNSAPLASSPKRGRGRPPGSGKKQQLASLGETLSGSAGMGFTPHVITIGIGEDIGAKIMSFSQQGPRVVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIICLSGSYSLGETAGSRNRAGGLSVSLASPDGRVVGGGVGGALIAATPVQVIVGSFMWGSSKSKYKKREAIEGVIDSDHQAVDHAVAMANVQQNQNLTPTSVSMWPSSQSLDMRNAHMDIDLMRG 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36068528 36073380 - Sed0019457.1 Sed04g2231 710834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2231 333 ProSiteProfiles PPC domain profile profile. 145 286 IPR005175 -
Sed04g2231 333 CDD DUF296 150 264 IPR005175 -
Sed04g2231 333 SMART AT_hook_2 83 95 IPR017956 GO:0003677(InterPro)
Sed04g2231 333 SMART AT_hook_2 119 131 IPR017956 GO:0003677(InterPro)
Sed04g2231 333 Gene3D - 151 283 - -
Sed04g2231 333 MobiDBLite consensus disorder prediction 11 52 - -
Sed04g2231 333 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 28 315 IPR039605 GO:0003680(InterPro)
Sed04g2231 333 MobiDBLite consensus disorder prediction 98 114 - -
Sed04g2231 333 FunFam AT-hook motif nuclear-localized protein 1-like 151 281 - -
Sed04g2231 333 MobiDBLite consensus disorder prediction 1 135 - -
Sed04g2231 333 Pfam Plants and Prokaryotes Conserved (PCC) domain 151 264 IPR005175 -
Sed04g2231 333 SUPERFAMILY AF0104/ALDC/Ptd012-like 149 274 - -
Sed04g2231 333 PRINTS AT-hook-like domain signature 117 128 IPR017956 GO:0003677(InterPro)
Sed04g2231 333 PRINTS AT-hook-like domain signature 83 93 IPR017956 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3886 Sed-Chr1:68107704 Sed04g2231 Sed-Chr4:36068528 3.10E-74 dispersed
Sed04g2231 Sed-Chr4:36068528 Sed05g0800 Sed-Chr5:6287196 3.60E-75 dispersed
Sed04g2231 Sed-Chr4:36068528 Sed09g0064 Sed-Chr9:499521 1.90E-169 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2231 - - - 0.0