Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed04g2239 | ATGGACGTGGGATTGGCGTTACTTATAGTAACGGCAGTGACGGCGTATCTCATTTGGTTCACCTTCATTTCACGGTCGTTAAAAGGCCCACAAATGTGGCCGTTAGTCGGAAGCCTGCCCGGGCTCATCGAAAACTGTGACCGTTTACACGACTGGATCTCTGACAACCTCCGCGCGTGCGGCGGCACGTACCAAACCTGCATCTGGGCCTTTCCTTTTTTCGCCAAAAAGCAAGGCCTCGTGACTGTCACGTGCGACCCCAGAAACCTCGAGCACATCCTCAAAACCCGGTTCGACAACTACCCCAAGGGTCCCACGTGGCAAGCCGTTTTCCACGAGCTCCTCGGCCAGGGGATCTTCAACTCCGACGGCGACACGTGGCTCTTCCAGAGAAAAACGGCCGCCTTGGAATTTACCACTAGGACCCTCCGCCAAGCCATGGCTCGCTGGGTTAGCCGAGCCATTCAGCTCCGGTTTTGCCCCATTTTGAAACAAGCCGAGCTCGATCGTAAGCCGATTGATCTTCAGGATTTGTTGCTGCGCCTTACTTTCGATAACATTTGCGGCTTGGCTTTTGGTAAGGATCCGATGACTTGCGCGCCGGGATTCCCCGAAAACGGCTTTGCCACGGCCTTCGACCGAGCCACCGAGGCTTCCTTGCAACGGTTTATTTTACCGAAAATGCTTTGGAAATTCAAGAAATGGCTCCGGCTTGGAATGGAGGTCAGCTTGAGCCGTAGCATTGTCCACATAGAGGAGTATTTATCGAGTGTGATCGATACACGTAAGCTCGAGTTGCAGAGTCAGCCTAAAGACTCAACCCCACACGACGATTTGTTGTCACGGTTCATGAAAAAGAAGGAAGGCAACTACTCCAACGCATTCCTCAGCCACGTGGCGCTTAATTTCATCCTAGCTGGAAGAGACACGTCATCCGTTGCACTGAGCTGGTTCTTCTGGTTGGTAACATTAAACCCACTCGTAGAGGAAAAGATACTCCGCGAGATCTGCACCGTTCTGATCGAGACACGTGGCGAAAGCATCCAATCATGGCTGGATGAGCCGTTAGGATTCGAGGAAATCGACCGTCTGATTTATCTGAAAGCCGCTCTCACCGAAACCCTAAGACTGTACCCGTCGGTGCCGGAGGATTCAAAGCACGTGGTCGCCGACGACGTTCTGCCGGACGGAACGTTCGTTCCGGCGGGATCGTCGGTGACGTATTCGATCTATTCGACGGGGAGGATGAAGTCGACGTGGGGGGAGGACTGCCTGGAATTCCGGCCGGAGCGGTGGCTGACTGCGGCCGGCGAGAAATTCGTAGCGTGCGATTCGTACAAATTCGTAGCGTTCAATGCGGGGCCGAGGATCTGCTTGGGGAAGGACTTGGCGTATTTGCAGATGAAGTCGATAGCGGCGGCGGTGCTGCTCCGGCACCGGCTGAATGTGGCGGCGGGGCATAAGGTGGAACAGAAAATGTCGCTGACGCTGTTCATGAAATACGGGCTGAAGGTGAACGTTCACCGGAGGGACTTGGAGGGAATTTTGGAGAGTATTAGGGGCAAAATCAGAATTTCACAAACGAACGATGCTCCGTTAGTCGCCGTTGTGAACTGTAACGGCAGGTGCAACGGTGTTAATAAAGTTTAG | 1650 | 53.76 | MDVGLALLIVTAVTAYLIWFTFISRSLKGPQMWPLVGSLPGLIENCDRLHDWISDNLRACGGTYQTCIWAFPFFAKKQGLVTVTCDPRNLEHILKTRFDNYPKGPTWQAVFHELLGQGIFNSDGDTWLFQRKTAALEFTTRTLRQAMARWVSRAIQLRFCPILKQAELDRKPIDLQDLLLRLTFDNICGLAFGKDPMTCAPGFPENGFATAFDRATEASLQRFILPKMLWKFKKWLRLGMEVSLSRSIVHIEEYLSSVIDTRKLELQSQPKDSTPHDDLLSRFMKKKEGNYSNAFLSHVALNFILAGRDTSSVALSWFFWLVTLNPLVEEKILREICTVLIETRGESIQSWLDEPLGFEEIDRLIYLKAALTETLRLYPSVPEDSKHVVADDVLPDGTFVPAGSSVTYSIYSTGRMKSTWGEDCLEFRPERWLTAAGEKFVACDSYKFVAFNAGPRICLGKDLAYLQMKSIAAAVLLRHRLNVAAGHKVEQKMSLTLFMKYGLKVNVHRRDLEGILESIRGKIRISQTNDAPLVAVVNCNGRCNGVNKV | 549 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 36137951 | 36139832 | - | Sed0026065.1 | Sed04g2239 | 710842 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed04g2239 | 549 | PRINTS | E-class P450 group I signature | 315 | 341 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2239 | 549 | PRINTS | E-class P450 group I signature | 295 | 312 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2239 | 549 | PRINTS | E-class P450 group I signature | 368 | 386 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2239 | 549 | PRINTS | E-class P450 group I signature | 448 | 458 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2239 | 549 | PRINTS | E-class P450 group I signature | 458 | 481 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2239 | 549 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 451 | 460 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed04g2239 | 549 | PRINTS | P450 superfamily signature | 458 | 469 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2239 | 549 | PRINTS | P450 superfamily signature | 369 | 380 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2239 | 549 | PRINTS | P450 superfamily signature | 306 | 323 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2239 | 549 | PRINTS | P450 superfamily signature | 449 | 458 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2239 | 549 | SUPERFAMILY | Cytochrome P450 | 21 | 510 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2239 | 549 | FunFam | Cytochrome P450 | 21 | 513 | - | - | |
| Sed04g2239 | 549 | Pfam | Cytochrome P450 | 28 | 496 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2239 | 549 | Gene3D | Cytochrome P450 | 24 | 513 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2239 | 549 | CDD | CYP86A | 67 | 503 | - | - | |
| Sed04g2239 | 549 | PANTHER | CYTOCHROME P450 | 18 | 503 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed03g1893 | Sed-Chr3:12891524 | Sed04g2239 | Sed-Chr4:36137951 | 2.60E-99 | dispersed | |
| Sed04g2239 | Sed-Chr4:36137951 | Sed07g0603 | Sed-Chr7:4565135 | 1.60E-123 | dispersed | |
| Sed01g1153 | Sed-Chr1:8561665 | Sed04g2239 | Sed-Chr4:36137951 | 1.20E-186 | transposed | |
| Sed05g0770 | Sed-Chr5:6106634 | Sed04g2239 | Sed-Chr4:36137951 | 5.80E-221 | transposed | |
| Sed04g2239 | Sed-Chr4:36137951 | Sed09g0050 | Sed-Chr9:409158 | 8.90E-297 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed04g2239 | K15398 | - | csv:101221526 | 1012.68 |