Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2276 ATGGACTTATCCCTAAGAATAGACTCCAACAACAACAACAATGGGGTTGAGGTTGAGAAAGAGCACATGTTTGACAAAGTGGTGACTCCAAGCGATGTGGGAAAACTAAACCGACTGGTGATCCCGAAACAACAAGCCGAAAAGTACTTCCCTTTGGACTCAACCAAGGCCGGCCTCGTCTTGAACTTCGAGGACCCCAGCGGAAAGCCGTGGAGGTTTCGCTACTCCTACTGGAACAGCAGCCAGAGCTACGTGATGACCAAAGGCTGGAGCCGTTTCGTCAAACACAACAAACTCCATGCAGGCGACGTTGTTTCCTTCCTCCGCGCCCTCCCCGCTAACCTTCACCGCCTTTTCATCGACTCTCGCCCCCGCCACATTACTCTCCCACGGCCTCCAACCCCCGCCCACCATCATCATCTCATCACTAATATTTTCTCCAATCACTATATTCCCGATTATAATGCTTCCATGTATTATTTTCGACCTTCCATATTCTCTTCTTCCTCCTCTCTCTATAAGAATGCGAATGTTATTCACAAGGAAGAAGGCTCTTCAATTGGGGAACTTAACAAAGCTGGATCGGGCCGCATCGGGGCAAAGCGACTCCGCTTGTTCGGAGTGAACATGGAGTGTGCTACAGCGGATGGAGACCGTGAAGAGGATCCGTCAAACAAGAGAAGGAAACAGTCCTTGTCCTTCAATTGGGATTTGATTTAA 720 49.31 MDLSLRIDSNNNNNGVEVEKEHMFDKVVTPSDVGKLNRLVIPKQQAEKYFPLDSTKAGLVLNFEDPSGKPWRFRYSYWNSSQSYVMTKGWSRFVKHNKLHAGDVVSFLRALPANLHRLFIDSRPRHITLPRPPTPAHHHHLITNIFSNHYIPDYNASMYYFRPSIFSSSSSLYKNANVIHKEEGSSIGELNKAGSGRIGAKRLRLFGVNMECATADGDREEDPSNKRRKQSLSFNWDLI 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36503785 36504635 + Sed0012067.1 Sed04g2276 710879

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2276 239 Pfam B3 DNA binding domain 24 108 IPR003340 GO:0003677(InterPro)
Sed04g2276 239 CDD B3_DNA 22 107 IPR003340 GO:0003677(InterPro)
Sed04g2276 239 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 13 210 IPR044800 GO:0003700(InterPro)
Sed04g2276 239 MobiDBLite consensus disorder prediction 215 239 - -
Sed04g2276 239 SMART B3_2 24 123 IPR003340 GO:0003677(InterPro)
Sed04g2276 239 ProSiteProfiles B3 DNA-binding domain profile. 24 123 IPR003340 GO:0003677(InterPro)
Sed04g2276 239 SUPERFAMILY DNA-binding pseudobarrel domain 21 111 IPR015300 -
Sed04g2276 239 Gene3D - 17 139 IPR015300 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2276 K09287 - - csv:101221141 246.514
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2276 Sed-Chr4:36503785 Sed09g0569 Sed-Chr9:6384244 4.30E-70 dispersed
Sed04g2276 Sed-Chr4:36503785 Sed07g1608 Sed-Chr7:13190640 3.70E-45 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed04g1495 . 17 159 RAV Transcription Factor Family AT2G36080 60.8 2.7e-45 179.5
Sed13g0861 . 47 180 RAV Transcription Factor Family AT2G36080 62.0 3.6e-42 169.1
Sed13g0860 . 47 180 RAV Transcription Factor Family AT2G36080 62.0 3.6e-42 169.1
Sed09g0569 . 67 181 RAV Transcription Factor Family AT2G36080 70.3 6.2e-42 168.3
Sed07g1608 . 48 157 RAV Transcription Factor Family AT2G36080 70.8 5.8e-40 161.8
Sed05g0642 . 43 170 RAV Transcription Factor Family AT2G36080 61.1 1.3e-39 160.6
Sed01g3764 . 53 162 RAV Transcription Factor Family AT2G36080 69.0 1.3e-39 160.6
Sed07g2058 . 171 293 RAV Transcription Factor Family AT2G36080 62.9 1.6e-37 153.7
Sed06g1865 . 169 276 RAV Transcription Factor Family AT2G36080 68.8 1.3e-36 150.6
Sed09g0569 . 70 293 RAV Transcription Factor Family AT2G46870 53.6 9.3e-57 218.4
Sed07g1608 . 48 312 RAV Transcription Factor Family AT2G46870 50.4 1.2e-56 218.0
Sed01g3764 . 53 171 RAV Transcription Factor Family AT2G46870 86.7 4.6e-56 216.1
Sed05g0642 . 25 161 RAV Transcription Factor Family AT2G46870 76.8 5.6e-54 209.1
Sed07g2058 . 176 288 RAV Transcription Factor Family AT2G46870 67.2 1.3e-39 161.4
Sed06g1865 . 166 276 RAV Transcription Factor Family AT2G46870 67.5 8.7e-39 158.7
Sed03g1196 . 165 280 RAV Transcription Factor Family AT2G46870 66.4 2.1e-37 154.1
Sed04g1495 . 17 169 RAV Transcription Factor Family AT2G46870 51.9 2.4e-36 150.6
Sed04g1495 . 5 133 RAV Transcription Factor Family AT3G11580 58.4 5.9e-40 162.2
Sed09g0569 . 58 181 RAV Transcription Factor Family AT3G11580 60.7 6.5e-39 158.7
Sed07g1608 . 48 157 RAV Transcription Factor Family AT3G11580 62.8 3.2e-38 156.4
Sed01g3764 . 53 164 RAV Transcription Factor Family AT3G11580 62.6 4.2e-38 156.0
Sed13g0861 . 47 156 RAV Transcription Factor Family AT3G11580 62.0 9.3e-38 154.8
Sed13g0860 . 47 156 RAV Transcription Factor Family AT3G11580 62.0 9.3e-38 154.8
Sed05g0642 . 44 156 RAV Transcription Factor Family AT3G11580 61.3 1.6e-37 154.1
Sed13g0861 . 39 272 RAV Transcription Factor Family AT3G61970 51.7 1.6e-53 207.6
Sed13g0860 . 39 272 RAV Transcription Factor Family AT3G61970 51.7 1.6e-53 207.6
Sed01g3764 . 52 171 RAV Transcription Factor Family AT3G61970 80.5 1.5e-51 201.1
Sed09g0569 . 71 293 RAV Transcription Factor Family AT3G61970 55.1 1.9e-51 200.7
Sed05g0642 . 37 163 RAV Transcription Factor Family AT3G61970 75.4 1.4e-49 194.5
Sed06g1865 . 154 276 RAV Transcription Factor Family AT3G61970 64.5 4.0e-41 166.4
Sed07g2058 . 176 288 RAV Transcription Factor Family AT3G61970 65.8 4.9e-39 159.5
Sed04g1495 . 17 126 RAV Transcription Factor Family AT3G61970 63.6 2.7e-37 153.7
Sed03g1196 . 163 280 RAV Transcription Factor Family AT3G61970 64.2 2.3e-36 150.6
Sed05g0642 . 44 172 RAV Transcription Factor Family AT4G01500 64.0 8.2e-43 172.2
Sed01g3764 . 54 170 RAV Transcription Factor Family AT4G01500 66.9 5.3e-42 169.5
Sed04g2276 . 20 125 RAV Transcription Factor Family AT4G01500 67.5 1.4e-37 154.8
Sed09g0569 . 73 181 RAV Transcription Factor Family AT5G06250 67.2 8.9e-40 161.8
Sed01g3764 . 54 162 RAV Transcription Factor Family AT5G06250 65.5 8.9e-40 161.8
Sed05g0642 . 44 152 RAV Transcription Factor Family AT5G06250 63.0 2.2e-38 157.1
Sed06g1865 . 169 276 RAV Transcription Factor Family AT5G06250 64.7 5.4e-37 152.5
Sed07g2058 . 176 284 RAV Transcription Factor Family AT5G06250 64.1 7.0e-37 152.1
Sed08g0593 . 42 341 RAV Transcription Factor Family AT1G50680 53.2 2.8e-83 306.6
Sed12g2296 . 45 340 RAV Transcription Factor Family AT1G50680 52.7 2.4e-82 303.5
Sed12g2297 . 45 340 RAV Transcription Factor Family AT1G50680 52.7 2.4e-82 303.5
Sed08g0593 . 42 341 RAV Transcription Factor Family AT1G51120 52.2 4.5e-84 309.3
Sed12g2296 . 41 340 RAV Transcription Factor Family AT1G51120 51.3 5.5e-82 302.4
Sed12g2297 . 41 340 RAV Transcription Factor Family AT1G51120 51.3 5.5e-82 302.4
Sed07g2058 . 21 341 RAV Transcription Factor Family AT1G13260 65.0 8.6e-104 374.8
Sed06g1865 . 1 326 RAV Transcription Factor Family AT1G13260 61.7 3.4e-100 362.8
Sed03g1196 . 40 319 RAV Transcription Factor Family AT1G13260 64.0 5.8e-92 335.5
Sed05g0642 . 34 158 RAV Transcription Factor Family AT1G13260 64.3 4.8e-38 156.4
Sed01g3764 . 55 168 RAV Transcription Factor Family AT1G13260 67.8 1.8e-37 154.5
Sed09g0569 . 74 181 RAV Transcription Factor Family AT1G13260 69.7 2.0e-36 151.0
Sed13g0861 . 45 156 RAV Transcription Factor Family AT1G13260 67.3 3.4e-36 150.2
Sed13g0860 . 45 156 RAV Transcription Factor Family AT1G13260 67.3 3.4e-36 150.2
Sed07g2058 . 18 339 RAV Transcription Factor Family AT3G25730 62.4 3.4e-97 352.8
Sed06g1865 . 6 324 RAV Transcription Factor Family AT3G25730 61.0 4.9e-96 349.0
Sed03g1196 . 37 317 RAV Transcription Factor Family AT3G25730 61.0 1.1e-87 321.2
Sed07g2058 . 1 342 RAV Transcription Factor Family AT1G68840 60.1 3.1e-109 392.9
Sed06g1865 . 1 327 RAV Transcription Factor Family AT1G68840 62.3 8.5e-107 384.8
Sed03g1196 . 40 320 RAV Transcription Factor Family AT1G68840 60.3 1.9e-90 330.5
Sed09g0569 . 64 191 RAV Transcription Factor Family AT1G68840 63.8 3.4e-39 160.2
Sed05g0642 . 44 152 RAV Transcription Factor Family AT1G68840 70.3 1.7e-38 157.9
Sed01g3764 . 54 162 RAV Transcription Factor Family AT1G68840 69.4 1.4e-37 154.8
Sed13g0861 . 48 156 RAV Transcription Factor Family AT1G68840 67.6 2.7e-36 150.6
Sed13g0860 . 48 156 RAV Transcription Factor Family AT1G68840 67.6 2.7e-36 150.6
Sed07g2058 . 18 339 RAV Transcription Factor Family AT3G25730 62.4 3.4e-97 352.8
Sed06g1865 . 6 324 RAV Transcription Factor Family AT3G25730 61.0 4.9e-96 349.0
Sed03g1196 . 37 317 RAV Transcription Factor Family AT3G25730 61.0 1.1e-87 321.2
Sed08g0593 . 42 341 RAV Transcription Factor Family AT1G51120 52.2 4.5e-84 309.3
Sed12g2296 . 41 340 RAV Transcription Factor Family AT1G51120 51.3 5.5e-82 302.4
Sed12g2297 . 41 340 RAV Transcription Factor Family AT1G51120 51.3 5.5e-82 302.4
Sed04g1495 . 5 133 RAV Transcription Factor Family AT3G11580 58.4 5.9e-40 162.2
Sed09g0569 . 58 181 RAV Transcription Factor Family AT3G11580 60.7 6.5e-39 158.7
Sed07g1608 . 48 157 RAV Transcription Factor Family AT3G11580 62.8 3.2e-38 156.4
Sed01g3764 . 53 164 RAV Transcription Factor Family AT3G11580 62.6 4.2e-38 156.0
Sed13g0861 . 47 156 RAV Transcription Factor Family AT3G11580 62.0 9.3e-38 154.8
Sed13g0860 . 47 156 RAV Transcription Factor Family AT3G11580 62.0 9.3e-38 154.8
Sed05g0642 . 44 156 RAV Transcription Factor Family AT3G11580 61.3 1.6e-37 154.1
Sed05g0642 . 44 172 RAV Transcription Factor Family AT4G01500 64.0 8.2e-43 172.2
Sed01g3764 . 54 170 RAV Transcription Factor Family AT4G01500 66.9 5.3e-42 169.5
Sed04g2276 . 20 125 RAV Transcription Factor Family AT4G01500 67.5 1.4e-37 154.8
Sed04g1495 . 17 159 RAV Transcription Factor Family AT2G36080 60.8 2.7e-45 179.5
Sed13g0861 . 47 180 RAV Transcription Factor Family AT2G36080 62.0 3.6e-42 169.1
Sed13g0860 . 47 180 RAV Transcription Factor Family AT2G36080 62.0 3.6e-42 169.1
Sed09g0569 . 67 181 RAV Transcription Factor Family AT2G36080 70.3 6.2e-42 168.3
Sed07g1608 . 48 157 RAV Transcription Factor Family AT2G36080 70.8 5.8e-40 161.8
Sed05g0642 . 43 170 RAV Transcription Factor Family AT2G36080 61.1 1.3e-39 160.6
Sed01g3764 . 53 162 RAV Transcription Factor Family AT2G36080 69.0 1.3e-39 160.6
Sed07g2058 . 171 293 RAV Transcription Factor Family AT2G36080 62.9 1.6e-37 153.7
Sed06g1865 . 169 276 RAV Transcription Factor Family AT2G36080 68.8 1.3e-36 150.6
Sed09g0569 . 73 181 RAV Transcription Factor Family AT5G06250 67.2 8.9e-40 161.8
Sed01g3764 . 54 162 RAV Transcription Factor Family AT5G06250 65.5 8.9e-40 161.8
Sed05g0642 . 44 152 RAV Transcription Factor Family AT5G06250 63.0 2.2e-38 157.1
Sed06g1865 . 169 276 RAV Transcription Factor Family AT5G06250 64.7 5.4e-37 152.5
Sed07g2058 . 176 284 RAV Transcription Factor Family AT5G06250 64.1 7.0e-37 152.1
Sed09g0569 . 70 293 RAV Transcription Factor Family AT2G46870 53.6 9.3e-57 218.4
Sed07g1608 . 48 312 RAV Transcription Factor Family AT2G46870 50.4 1.2e-56 218.0
Sed01g3764 . 53 171 RAV Transcription Factor Family AT2G46870 86.7 4.6e-56 216.1
Sed05g0642 . 25 161 RAV Transcription Factor Family AT2G46870 76.8 5.6e-54 209.1
Sed07g2058 . 176 288 RAV Transcription Factor Family AT2G46870 67.2 1.3e-39 161.4
Sed06g1865 . 166 276 RAV Transcription Factor Family AT2G46870 67.5 8.7e-39 158.7
Sed03g1196 . 165 280 RAV Transcription Factor Family AT2G46870 66.4 2.1e-37 154.1
Sed04g1495 . 17 169 RAV Transcription Factor Family AT2G46870 51.9 2.4e-36 150.6
Sed08g0593 . 42 341 RAV Transcription Factor Family AT1G50680 53.2 2.8e-83 306.6
Sed12g2296 . 45 340 RAV Transcription Factor Family AT1G50680 52.7 2.4e-82 303.5
Sed12g2297 . 45 340 RAV Transcription Factor Family AT1G50680 52.7 2.4e-82 303.5
Sed13g0861 . 39 272 RAV Transcription Factor Family AT3G61970 51.7 1.6e-53 207.6
Sed13g0860 . 39 272 RAV Transcription Factor Family AT3G61970 51.7 1.6e-53 207.6
Sed01g3764 . 52 171 RAV Transcription Factor Family AT3G61970 80.5 1.5e-51 201.1
Sed09g0569 . 71 293 RAV Transcription Factor Family AT3G61970 55.1 1.9e-51 200.7
Sed05g0642 . 37 163 RAV Transcription Factor Family AT3G61970 75.4 1.4e-49 194.5
Sed06g1865 . 154 276 RAV Transcription Factor Family AT3G61970 64.5 4.0e-41 166.4
Sed07g2058 . 176 288 RAV Transcription Factor Family AT3G61970 65.8 4.9e-39 159.5
Sed04g1495 . 17 126 RAV Transcription Factor Family AT3G61970 63.6 2.7e-37 153.7
Sed03g1196 . 163 280 RAV Transcription Factor Family AT3G61970 64.2 2.3e-36 150.6
Sed07g2058 . 21 341 RAV Transcription Factor Family AT1G13260 65.0 8.6e-104 374.8
Sed06g1865 . 1 326 RAV Transcription Factor Family AT1G13260 61.7 3.4e-100 362.8
Sed03g1196 . 40 319 RAV Transcription Factor Family AT1G13260 64.0 5.8e-92 335.5
Sed05g0642 . 34 158 RAV Transcription Factor Family AT1G13260 64.3 4.8e-38 156.4
Sed01g3764 . 55 168 RAV Transcription Factor Family AT1G13260 67.8 1.8e-37 154.5
Sed09g0569 . 74 181 RAV Transcription Factor Family AT1G13260 69.7 2.0e-36 151.0
Sed13g0861 . 45 156 RAV Transcription Factor Family AT1G13260 67.3 3.4e-36 150.2
Sed13g0860 . 45 156 RAV Transcription Factor Family AT1G13260 67.3 3.4e-36 150.2
Sed07g2058 . 1 342 RAV Transcription Factor Family AT1G68840 60.1 3.1e-109 392.9
Sed06g1865 . 1 327 RAV Transcription Factor Family AT1G68840 62.3 8.5e-107 384.8
Sed03g1196 . 40 320 RAV Transcription Factor Family AT1G68840 60.3 1.9e-90 330.5
Sed09g0569 . 64 191 RAV Transcription Factor Family AT1G68840 63.8 3.4e-39 160.2
Sed05g0642 . 44 152 RAV Transcription Factor Family AT1G68840 70.3 1.7e-38 157.9
Sed01g3764 . 54 162 RAV Transcription Factor Family AT1G68840 69.4 1.4e-37 154.8
Sed13g0861 . 48 156 RAV Transcription Factor Family AT1G68840 67.6 2.7e-36 150.6
Sed13g0860 . 48 156 RAV Transcription Factor Family AT1G68840 67.6 2.7e-36 150.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000626 3 5 4 4 3 3 5 3 3 3 3 3 6 3 3 6 3 1 4 3 3 2 3 3 3 3 2 7 4 2 103
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38234 PF02362 B3 3.90E-26 CL0405 Sed TF