Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2276 ATGGACTTATCCCTAAGAATAGACTCCAACAACAACAACAATGGGGTTGAGGTTGAGAAAGAGCACATGTTTGACAAAGTGGTGACTCCAAGCGATGTGGGAAAACTAAACCGACTGGTGATCCCGAAACAACAAGCCGAAAAGTACTTCCCTTTGGACTCAACCAAGGCCGGCCTCGTCTTGAACTTCGAGGACCCCAGCGGAAAGCCGTGGAGGTTTCGCTACTCCTACTGGAACAGCAGCCAGAGCTACGTGATGACCAAAGGCTGGAGCCGTTTCGTCAAACACAACAAACTCCATGCAGGCGACGTTGTTTCCTTCCTCCGCGCCCTCCCCGCTAACCTTCACCGCCTTTTCATCGACTCTCGCCCCCGCCACATTACTCTCCCACGGCCTCCAACCCCCGCCCACCATCATCATCTCATCACTAATATTTTCTCCAATCACTATATTCCCGATTATAATGCTTCCATGTATTATTTTCGACCTTCCATATTCTCTTCTTCCTCCTCTCTCTATAAGAATGCGAATGTTATTCACAAGGAAGAAGGCTCTTCAATTGGGGAACTTAACAAAGCTGGATCGGGCCGCATCGGGGCAAAGCGACTCCGCTTGTTCGGAGTGAACATGGAGTGTGCTACAGCGGATGGAGACCGTGAAGAGGATCCGTCAAACAAGAGAAGGAAACAGTCCTTGTCCTTCAATTGGGATTTGATTTAA 720 49.31 MDLSLRIDSNNNNNGVEVEKEHMFDKVVTPSDVGKLNRLVIPKQQAEKYFPLDSTKAGLVLNFEDPSGKPWRFRYSYWNSSQSYVMTKGWSRFVKHNKLHAGDVVSFLRALPANLHRLFIDSRPRHITLPRPPTPAHHHHLITNIFSNHYIPDYNASMYYFRPSIFSSSSSLYKNANVIHKEEGSSIGELNKAGSGRIGAKRLRLFGVNMECATADGDREEDPSNKRRKQSLSFNWDLI 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36503785 36504635 + Sed0012067.1 Sed04g2276 710879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2276 239 Pfam B3 DNA binding domain 24 108 IPR003340 GO:0003677(InterPro)
Sed04g2276 239 CDD B3_DNA 22 107 IPR003340 GO:0003677(InterPro)
Sed04g2276 239 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 13 210 IPR044800 GO:0003700(InterPro)
Sed04g2276 239 MobiDBLite consensus disorder prediction 215 239 - -
Sed04g2276 239 SMART B3_2 24 123 IPR003340 GO:0003677(InterPro)
Sed04g2276 239 ProSiteProfiles B3 DNA-binding domain profile. 24 123 IPR003340 GO:0003677(InterPro)
Sed04g2276 239 SUPERFAMILY DNA-binding pseudobarrel domain 21 111 IPR015300 -
Sed04g2276 239 Gene3D - 17 139 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2276 Sed-Chr4:36503785 Sed09g0569 Sed-Chr9:6384244 4.30E-70 dispersed
Sed04g2276 Sed-Chr4:36503785 Sed07g1608 Sed-Chr7:13190640 3.70E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38234 PF02362 B3 3.90E-26 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2276 K09287 - csv:101221141 246.514