Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed04g2295 | ATGTGGTTGAGCACTCAAATTGAAAGCCTCTGGGTTTTCGCCTTAGCTTCCAAATGCTCAGCTCTCACACACTACAACACCCTTTACTTTCTCCTCATCATTCTCCTCATTTGGTTCCTTCGTTCCATTTACCGCTGGACCCACCCGGGTGGCCCGGCTTGGTCCGGCTGCTCAACCCGCCGCAATCCCCCCATCCCTGGTCCTAGAGGCCTCCCCTTCATCGGTAGCATGACCTTGATGACCGGTCTGGCCCACCAACGAATCGCCACCGTGGCCAAATCCCTAGCCGCCACTCGGTTGATGGCCTTTTCGCTTGCGAATACTCGCGTCATGGTCACGTGCAACCCCGACGTGGCGAGAGACATCCTTAACAGCTCGGTCTTTGCGGACCGTCCTGTTAAGGAGTCGGCGTACTCGTTGTTGTTCCATCGCGCCATCGGGTTCGCGCCTTATGGCGTGTATTGGCGCACCCTTCGACGTATTGCTTCCCAACACCTTTTTAGCCCGAAACAAATCAAATCCTCGGAGTTCCAACGCCGCCAAATTGCTTCCCAAATGGTCGCAATGTTGTCGAGTGCCACGTGGTGTTGCCAAGTTCGGGACACTCTGAAACGAGCCTCGTTGAACCATATGATGGGGTCTGTGTTTGGTCAGTTTTATAGCCTTTTTGACTCTAACGACCAAGTCGAGCTACTCAAGAACCTAGTGGACGAAGGGTATGATTTGTTGGGCCTTCTCAATTGGTCCGACCATCTCCCCCTTTTGGCTGATTTTGACCCACAGCGTATCCGGTTTAGATGCTCCCACTTGGTCCCTAAAGTGAACCGCTTCCTCACCCGGATTATTGACGAACACCGGTCCAAATCAACCAGCCAAATCAATGATTTTGTCGATGTTCTTCTCTCTCTTCAACAAACTGAAAAACTTTCTGACTCCGATATCATCGCCGTTCTTTGGGAAATGATATTTAGAGGAACGGACACGGTGGCAGTTTTGATAGAGTGGATTCTAGCAAGGATGGTGGCTCATAAGGACGAGCAACAAAAGGTGCAGGATGAATTGGATAAGGTCGTTGGTAAATCACGCGCCGTCGCCGAATCCGACATTCCGTCGTTGGTTTATCTGACCGCCGTGGTCAAGGAAGTTCTCCGGTTGCACCCGCCGGGCCCGCTCTTGTCTTGGGCCCGCCGCGCCACCGCCGATACAACCGTCGACGGCCATCACGTGCCTCGCGGGACCACCGCCATGGTCAACATGTGGTCCATCGCGCGGGACCCACAAGTGTGGTCCAACCCACTCGAGTTCATGCCCCAGAGATTCGTGTCCGGTTCAAGCGGCGGTGCTGACGTGGAGTTCTCGGTTATGGGTTCGGATCTACGATTGGCTCCGTTTGGGTCGGGTCGGAGGACTTGCCCTGGGAAGGCACTCGCTTGGACAACTGTCACCTTCTGGGTGGCTACTCTTTTGCACGAGTTTAAATGGTTGCCTTCGTCGAACCAAAACGACGCCGTTGATTTCTCTGAAGAACTTAAACTCTCTTGTGAAATGGCCAATCCACTCACCGTTCAACTATTTCCAAGGCGCTAA | 1587 | 53.43 | MWLSTQIESLWVFALASKCSALTHYNTLYFLLIILLIWFLRSIYRWTHPGGPAWSGCSTRRNPPIPGPRGLPFIGSMTLMTGLAHQRIATVAKSLAATRLMAFSLANTRVMVTCNPDVARDILNSSVFADRPVKESAYSLLFHRAIGFAPYGVYWRTLRRIASQHLFSPKQIKSSEFQRRQIASQMVAMLSSATWCCQVRDTLKRASLNHMMGSVFGQFYSLFDSNDQVELLKNLVDEGYDLLGLLNWSDHLPLLADFDPQRIRFRCSHLVPKVNRFLTRIIDEHRSKSTSQINDFVDVLLSLQQTEKLSDSDIIAVLWEMIFRGTDTVAVLIEWILARMVAHKDEQQKVQDELDKVVGKSRAVAESDIPSLVYLTAVVKEVLRLHPPGPLLSWARRATADTTVDGHHVPRGTTAMVNMWSIARDPQVWSNPLEFMPQRFVSGSSGGADVEFSVMGSDLRLAPFGSGRRTCPGKALAWTTVTFWVATLLHEFKWLPSSNQNDAVDFSEELKLSCEMANPLTVQLFPRR | 528 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 36627529 | 36629909 | - | Sed0020670.1 | Sed04g2295 | 710898 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed04g2295 | 528 | PRINTS | P450 superfamily signature | 471 | 482 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2295 | 528 | PRINTS | P450 superfamily signature | 462 | 471 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2295 | 528 | PRINTS | P450 superfamily signature | 324 | 341 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2295 | 528 | PRINTS | P450 superfamily signature | 377 | 388 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2295 | 528 | SUPERFAMILY | Cytochrome P450 | 65 | 527 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2295 | 528 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 464 | 473 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed04g2295 | 528 | CDD | CYP78 | 97 | 520 | - | - | |
| Sed04g2295 | 528 | PRINTS | E-class P450 group I signature | 461 | 471 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2295 | 528 | PRINTS | E-class P450 group I signature | 313 | 330 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2295 | 528 | PRINTS | E-class P450 group I signature | 418 | 442 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2295 | 528 | PRINTS | E-class P450 group I signature | 333 | 359 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2295 | 528 | PRINTS | E-class P450 group I signature | 376 | 394 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2295 | 528 | PRINTS | E-class P450 group I signature | 471 | 494 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2295 | 528 | FunFam | Cytochrome P450 78A5 | 57 | 527 | - | - | |
| Sed04g2295 | 528 | PANTHER | CYTOCHROME P450 78A7-RELATED | 5 | 523 | IPR051996 | - | |
| Sed04g2295 | 528 | Gene3D | Cytochrome P450 | 56 | 524 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2295 | 528 | Pfam | Cytochrome P450 | 66 | 500 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed04g2295 | Sed-Chr4:36627529 | Sed09g0579 | Sed-Chr9:6589623 | 1.50E-248 | dispersed | |
| Sed04g2295 | Sed-Chr4:36627529 | Sed08g2131 | Sed-Chr8:35279533 | 2.10E-138 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed04g2295 | K20619 | - | csv:101216159 | 840.106 |