Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2316 ATGGATGATGACATTGAAAGTGCTAGTTTGGGGGCATACCAGGACAGGCAACGGACTTTTCCTGACATGCGTAGTAAAGTCAACACCCCATTGATTTTTCGGATATTGATGGGGATAAATATTCGTGTTCTCTTAGTCATTCTTCTCTTTGCGTTTGGATTAATATTCTACATTGGAGCAAGCACTTCCCCTATTATTGTGTTTGTCTTCTCAATTTGCATCGTCAGCTTCTGCTTTTCTATATATCTCACAAAATGGGTGCTCTCAAAAGATGAAGGGCCACCAGAGATGGTTCAGATTTCAGAGGCAATACGTGATGGAGCCGAAGGTTTCTTTAGGACGCAGTATGGTACCATCTCTAAAATGGCTATGTTACTTGCAGTAGTGATTCTTTGCATATACTTGTTTCGTAGCACTACTCCACAACAACAATCTTCTGGAATAGGGAGGTCAACAACAGCTTATATTACTGTTGCATCATTTCTGTTAGGAGCCTTGTGTTCAGGTATTGCAGGGTATGTTGGAATGTGGGTTTCAGTTCGTGCAAATGTTAGGGTCTCTAGTGCTGCCAGAAGGTCTGCGAGGGAGGCATTGCAGATCGCTGTTCGTGCTGGTGGTTTCTCGGCCATCGTTGTTGTTGGTATGGCTGTTATTGGTATAGCCATCCTGTATTCTGCTTTTCATGTTTGGTTGGATGTGGGTTCGCCAGGTTCAACAAAGGTTACTGACTTGCCTCTTCTTCTAGTGGGTTATGGTTTTGGAGCTTCTTTTGTTGCCCTATTTGCTCAGTTGGGTGGTGGTATCTTTACAAAAGCTGCTGATGTGGGAGCAGACCTTGTTGGAAAAGTTGAGCAGGGGATACCAGAGGATGATCCAAGAAATCCTGCTGTTATTGCAGATCTGGTTGGAGACAATGTGGGCGATTGTGCCGCTCGAGGTGCAGATCTTTTTGAAAGCATTGCGGCTGAAATCATCAGTGCCATGATACTTGGGGGAACAATGGCTGAGCGCTGTAAAATTGAAGATCCATCTGGCTTCATTTTGTTTCCGCTGGTGGTACACTCCTTTGATTTGGTGGTTTCATCAATTGGCATTCTCTCTATCAGGAGGGGTGCTCGTGAATCTGGTTTGAAGAGTCCCTTGGAGGATCCAATGACTATTTTGCAGAGAGGATATTCCGTCACTATCGTTTTGGCTGTTCTAACATTTGGTTTGTCTACCCGGTGGTTGCTTCACACTGAACAAGCACCTTCAGCATGGTTCAACTTTGCCTTGTGTGGCTTGGTTGGTATTATAACGGCTTACATTTTTGTCTGGATCACCAAATACTACACTGACTACAAGTACGAGCCTGTGCGTTCATTGGCACATTCTAGCACCACAGGCCATGGGACCAACATAATTGCTGGAGTCAGCTTGGGCCTGGAATCAACTGCACTTCCTGTTCTTGTTATTAGTGTATCTATTGTTTCGGCATTCTGGTTGGGTCACACGTCAGGACTTGTGGACGAAGCTGGAATTCCAACAGGCGGGCTGTTTGGTACTGCTGTAGCAACAATGGGAATGCTCAGCACTGCTGCCTATGTTCTCACAATGGATATGTTTGGTCCAATAGCTGATAATGCTGGTGGAATTGTTGAGATGAGTCAGCAGCCTGAAAGCGTTAGGGAGATCACTGATCTCCTTGATGCAGTAGGTAACACAACTAAAGCGACCACAAAAGGTTTTGCCATTGGCTCTGCAGCTCTTGCATCTTTCCTACTTTTTAGTGCTTATATGGATGAGGTTGCTTCATTTGCTAAAGAACCTTTTAAACAGGTAGATATTGCAATTCCAGAAGTTTTCGTTGGCGGCTTGTTGGGTTCCATGCTTATTTTTCTCTTTAGTGCTTGGGCCTGCTCTGCTGTTGGCCGAACAGCCCAAGAGGTAGTAAAGGAAGTAAGAAGACAGTTCATTGAGAGGCCTGGTATAATGGACTATACGGAGAAACCAGATTATGGACGTTGTGTTGCTATTGTAGCATCAGCATCTTTAAGGGAGATGATTAAGCCTGGTGCTCTGGCTATCATTTCTCCTATGGCAATTGGCTTTCTGTTTAGAATATTGGGATACTATACTGGGCATCCCCTTCTAGGGGCGAAGGTTGTCGCTGCGATGCTGATGTTTGCGACGGTGTCCGGAATTCTCATGGCCCTTTTTCTGAACACGGCAGGGGGTGCCTGGGATAATGCCAAAAAGTACATAGAGACCGGAGTTCTTGGAGGCAAAGGTAGCGATTGTCATAAAGCAGCTGTAACTGGGGACACCGTTGGCGACCCATTCAAGGACACGGCAGGGCCTTCTCTTCACGTTCTCATAAAAATGCTCGCAACGATTACGCTGGTCATGGCCCCCATTTTTCTATAA 2406 45.43 MDDDIESASLGAYQDRQRTFPDMRSKVNTPLIFRILMGINIRVLLVILLFAFGLIFYIGASTSPIIVFVFSICIVSFCFSIYLTKWVLSKDEGPPEMVQISEAIRDGAEGFFRTQYGTISKMAMLLAVVILCIYLFRSTTPQQQSSGIGRSTTAYITVASFLLGALCSGIAGYVGMWVSVRANVRVSSAARRSAREALQIAVRAGGFSAIVVVGMAVIGIAILYSAFHVWLDVGSPGSTKVTDLPLLLVGYGFGASFVALFAQLGGGIFTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFESIAAEIISAMILGGTMAERCKIEDPSGFILFPLVVHSFDLVVSSIGILSIRRGARESGLKSPLEDPMTILQRGYSVTIVLAVLTFGLSTRWLLHTEQAPSAWFNFALCGLVGIITAYIFVWITKYYTDYKYEPVRSLAHSSTTGHGTNIIAGVSLGLESTALPVLVISVSIVSAFWLGHTSGLVDEAGIPTGGLFGTAVATMGMLSTAAYVLTMDMFGPIADNAGGIVEMSQQPESVREITDLLDAVGNTTKATTKGFAIGSAALASFLLFSAYMDEVASFAKEPFKQVDIAIPEVFVGGLLGSMLIFLFSAWACSAVGRTAQEVVKEVRRQFIERPGIMDYTEKPDYGRCVAIVASASLREMIKPGALAIISPMAIGFLFRILGYYTGHPLLGAKVVAAMLMFATVSGILMALFLNTAGGAWDNAKKYIETGVLGGKGSDCHKAAVTGDTVGDPFKDTAGPSLHVLIKMLATITLVMAPIFL 801
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36809669 36822061 + Sed0023679.1 Sed04g2316 710919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2316 801 PIRSF H+-PPtase 59 801 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
Sed04g2316 801 PANTHER K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP 63 800 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
Sed04g2316 801 Hamap Putative K(+)-stimulated pyrophosphate-energized sodium pump [hppA]. 63 801 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
Sed04g2316 801 NCBIfam V-type H(+)-translocating pyrophosphatase 68 800 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
Sed04g2316 801 Pfam Inorganic H+ pyrophosphatase 74 796 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2316 Sed-Chr4:36809669 Sed08g0630 Sed-Chr8:4396998 2.00E-127 dispersed
Sed04g2316 Sed-Chr4:36809669 Sed12g2342 Sed-Chr12:33387368 8.90E-128 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2316 K23025 - csv:101217198 1438.71