Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2343 ATGGATGATATTCATGCGAGCGATGGACGGATGCATATCAGCCACGCGCAGCATTCGATGCACTCGCAATCTGTGCAAGAGCAGGAACATCATGAATTGCATTACATGAATAATGGGAACGGAATGGCTGATGAGCATGAAAATGAAGGCCATGGTATTATGGTTGTGGACAGGGAAGCTCCATCCGACCATGGTGACCTTGCTGAGAATCGTGGTGTTATGGTGGATCGAGGAGGGGATAACTGTGATCAGCTCACCCTGTCTTATCAGGGTCAAGTTTATGTTTTTGATTCTGCTTCGCCCGAAAAGGTTCAAGCCGTGTTATTATTATTGGGAGGTACTGAAGTACCTTTACGCGTTCCATCAATCCCAATAACTAATCAACAAAATGATAGGCATCTTACTGATGAAGCATTTAACCAGGCACTTGCCAGTGTCCCCCCACGTCAAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGGTTTCGTGAAAAGCGTAAGGAACGTAATTTTGACAAGAAAATTCGGTACACAGTTCGTAAAGAGGTAGCACTTAGAATGCAGCGTAATAAAGGTCAGTTTACGTCTTCTAAATCCATACATGAAGATTCATCATCGGCCATAACTAGTTGGGAATCAAATGAGAGTTGGAGTACAGATGGAAATGGATCCCAACAACAAGAAATTCTCTGCCGACATTGTGGTATTAGTGAGAAGTCTACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCTTGCGGACTGATGTGGGCAAACAAGGGAACTCTGCGGGACCTTTCGAAAGCACCAAACCAGGGTGGACAAGCTTCAACCTTTAACAGAAACGAGAATGTTGATTCTGAGTCCGACCCCAAAAGTGCTTAG 900 44.89 MDDIHASDGRMHISHAQHSMHSQSVQEQEHHELHYMNNGNGMADEHENEGHGIMVVDREAPSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDSASPEKVQAVLLLLGGTEVPLRVPSIPITNQQNDRHLTDEAFNQALASVPPRQSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKSIHEDSSSAITSWESNESWSTDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKAPNQGGQASTFNRNENVDSESDPKSA 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36945036 36950872 - Sed0022209.1 Sed04g2343 710946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2343 299 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
Sed04g2343 299 Pfam GATA zinc finger 231 267 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g2343 299 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 280 - -
Sed04g2343 299 ProSiteProfiles GATA-type zinc finger domain profile. 225 286 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g2343 299 Pfam tify domain 84 112 IPR010399 -
Sed04g2343 299 SMART GATA_3 225 278 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g2343 299 MobiDBLite consensus disorder prediction 270 299 - -
Sed04g2343 299 ProSitePatterns GATA-type zinc finger domain. 231 258 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g2343 299 MobiDBLite consensus disorder prediction 190 224 - -
Sed04g2343 299 CDD ZnF_GATA 231 286 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g2343 299 PANTHER GATA TRANSCRIPTION FACTOR 28 29 287 IPR045280 GO:0006355(InterPro)
Sed04g2343 299 SMART tify_2 78 113 IPR010399 -
Sed04g2343 299 Pfam CCT motif 155 197 IPR010402 GO:0005515(InterPro)
Sed04g2343 299 MobiDBLite consensus disorder prediction 270 289 - -
Sed04g2343 299 Gene3D - 221 289 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Sed04g2343 299 ProSiteProfiles CCT domain profile. 155 197 IPR010402 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2343 Sed-Chr4:36945036 Sed10g1896 Sed-Chr10:35776240 2.40E-54 dispersed
Sed04g2343 Sed-Chr4:36945036 Sed04g2344 Sed-Chr4:36945036 1.70E-148 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38241 PF06203 CCT 8.50E-15 CL0281 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2343 - - - 0.0