Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2344 ATGGATGATATTCATGCGAGCGATGGACGGATGCATATCAGCCACGCGCAGCATTCGATGCACTCGCAATCTGTGCAAGAGCAGGAACATCATGAATTGCATTACATGAATAATGGGAACGGAATGGCTGATGAGCATGAAAATGAAGGCCATGGTATTATGGTTGTGGACAGGGAAGCTCCATCCGACCATGGTGACCTTGCTGAGAATCGTGGTGTTATGGTGGATCGAGGAGGGGATAACTGTGATCAGCTCACCCTGTCTTATCAGGGTCAAGTTTATGTTTTTGATTCTGCTTCGCCCGAAAAGGTTCAAGCCGTGTTATTATTATTGGGAGGTACTGAAGTACCTTTACGCGTTCCATCAATCCCAATAACTAATCAACAAAATGATAGGGCACTTGCCAGTGTCCCCCCACGTCAAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGGTTTCGTGAAAAGCGTAAGGAACGTAATTTTGACAAGAAAATTCGGTACACAGTTCGTAAAGAGGTAGCACTTAGAATGCAGCGTAATAAAGGTCAGTTTACGTCTTCTAAATCCATACATGAAGATTCATCATCGGCCATAACTAGTTGGGAATCAAATGAGAGTTGGAGTACAGATGGAAATGGATCCCAACAACAAGAAATTCTCTGCCGACATTGTGGTATTAGTGAGAAGTCTACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCTTGCGGACTGATGTGGGCAAACAAGGGAACTCTGCGGGACCTTTCGAAAGCACCAAACCAGGGTGGACAAGCTTCAACCTTTAACAGAAACGAGAATGTTGATTCTGAGTCCGACCCCAAAAGTGCTTAG 873 45.13 MDDIHASDGRMHISHAQHSMHSQSVQEQEHHELHYMNNGNGMADEHENEGHGIMVVDREAPSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDSASPEKVQAVLLLLGGTEVPLRVPSIPITNQQNDRALASVPPRQSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKSIHEDSSSAITSWESNESWSTDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKAPNQGGQASTFNRNENVDSESDPKSA 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36945036 36950872 - Sed0022209.2 Sed04g2344 710947

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2344 290 ProSitePatterns GATA-type zinc finger domain. 222 249 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g2344 290 MobiDBLite consensus disorder prediction 261 290 - -
Sed04g2344 290 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
Sed04g2344 290 CDD ZnF_GATA 222 277 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g2344 290 ProSiteProfiles CCT domain profile. 146 188 IPR010402 GO:0005515(InterPro)
Sed04g2344 290 MobiDBLite consensus disorder prediction 181 215 - -
Sed04g2344 290 PANTHER GATA TRANSCRIPTION FACTOR 28 29 278 IPR045280 GO:0006355(InterPro)
Sed04g2344 290 MobiDBLite consensus disorder prediction 261 280 - -
Sed04g2344 290 SMART GATA_3 216 269 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g2344 290 SMART tify_2 78 113 IPR010399 -
Sed04g2344 290 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 217 271 - -
Sed04g2344 290 Pfam tify domain 84 112 IPR010399 -
Sed04g2344 290 Gene3D - 212 280 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Sed04g2344 290 ProSiteProfiles GATA-type zinc finger domain profile. 216 277 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g2344 290 Pfam CCT motif 146 188 IPR010402 GO:0005515(InterPro)
Sed04g2344 290 Pfam GATA zinc finger 222 258 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2344 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1395 Sed-Chr3:8892742 Sed04g2344 Sed-Chr4:36945036 1.90E-55 dispersed
Sed03g1396 Sed-Chr3:8892742 Sed04g2344 Sed-Chr4:36945036 1.90E-55 dispersed
Sed04g2344 Sed-Chr4:36945036 Sed10g1896 Sed-Chr10:35776240 1.10E-54 dispersed
Sed04g2343 Sed-Chr4:36945036 Sed04g2344 Sed-Chr4:36945036 1.70E-148 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed04g2344 . 1 221 Tify Gene Family AT3G21175 55.7 2.1e-55 213.4
Sed04g2343 . 1 230 Tify Gene Family AT3G21175 53.5 3.3e-53 206.1
Sed04g0199 . 50 294 Tify Gene Family AT4G24470 53.3 3.4e-70 263.1
Sed03g1397 . 44 291 Tify Gene Family AT4G24470 56.2 7.5e-70 261.9
Sed03g1399 . 44 291 Tify Gene Family AT4G24470 56.2 7.5e-70 261.9
Sed10g1896 . 87 265 Tify Gene Family AT4G24470 60.2 5.6e-49 192.6
Sed10g1897 . 87 265 Tify Gene Family AT4G24470 60.2 5.6e-49 192.6
Sed04g2344 . 73 264 Tify Gene Family AT4G24470 54.9 6.8e-47 185.7
Sed10g1898 . 87 257 Tify Gene Family AT4G24470 59.0 3.7e-45 179.9
Sed04g2343 . 73 273 Tify Gene Family AT4G24470 52.5 6.4e-45 179.1
Sed04g2344 . 1 286 Tify Gene Family AT1G51600 57.7 1.6e-82 303.9
Sed04g2343 . 1 295 Tify Gene Family AT1G51600 56.4 1.1e-81 301.2
Sed03g1393 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1394 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1395 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1396 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed10g1896 . 84 267 Tify Gene Family AT1G51600 60.9 1.9e-51 200.7
Sed10g1897 . 84 267 Tify Gene Family AT1G51600 60.9 1.9e-51 200.7
Sed04g0199 . 37 247 Tify Gene Family AT1G51600 53.5 5.9e-48 189.1
Sed10g1898 . 84 257 Tify Gene Family AT1G51600 60.4 1.7e-47 187.6
Sed06g0794 . 62 234 Tify Gene Family AT1G51600 51.1 3.2e-38 156.8
Sed04g0199 . 50 294 Tify Gene Family AT4G24470 53.3 3.4e-70 263.1
Sed03g1397 . 44 291 Tify Gene Family AT4G24470 56.2 7.5e-70 261.9
Sed03g1399 . 44 291 Tify Gene Family AT4G24470 56.2 7.5e-70 261.9
Sed10g1896 . 87 265 Tify Gene Family AT4G24470 60.2 5.6e-49 192.6
Sed10g1897 . 87 265 Tify Gene Family AT4G24470 60.2 5.6e-49 192.6
Sed04g2344 . 73 264 Tify Gene Family AT4G24470 54.9 6.8e-47 185.7
Sed10g1898 . 87 257 Tify Gene Family AT4G24470 59.0 3.7e-45 179.9
Sed04g2343 . 73 273 Tify Gene Family AT4G24470 52.5 6.4e-45 179.1
Sed04g2344 . 1 286 Tify Gene Family AT1G51600 57.7 1.6e-82 303.9
Sed04g2343 . 1 295 Tify Gene Family AT1G51600 56.4 1.1e-81 301.2
Sed03g1393 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1394 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1395 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1396 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed10g1896 . 84 267 Tify Gene Family AT1G51600 60.9 1.9e-51 200.7
Sed10g1897 . 84 267 Tify Gene Family AT1G51600 60.9 1.9e-51 200.7
Sed04g0199 . 37 247 Tify Gene Family AT1G51600 53.5 5.9e-48 189.1
Sed10g1898 . 84 257 Tify Gene Family AT1G51600 60.4 1.7e-47 187.6
Sed06g0794 . 62 234 Tify Gene Family AT1G51600 51.1 3.2e-38 156.8
Sed04g2344 . 1 221 Tify Gene Family AT3G21175 55.7 2.1e-55 213.4
Sed04g2343 . 1 230 Tify Gene Family AT3G21175 53.5 3.3e-53 206.1
Sed09g0734 . 1 180 Tify Gene Family AT4G14713 52.6 4.8e-47 185.7
Sed09g0735 . 1 180 Tify Gene Family AT4G14713 52.6 4.8e-47 185.7
Sed04g1936 . 1 180 Tify Gene Family AT4G14713 51.6 7.1e-43 171.8
Sed04g1935 . 1 180 Tify Gene Family AT4G14713 51.6 7.1e-43 171.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008711 0 4 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38242 PF06203 CCT 8.10E-15 CL0281 Sed TF