Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2344 ATGGATGATATTCATGCGAGCGATGGACGGATGCATATCAGCCACGCGCAGCATTCGATGCACTCGCAATCTGTGCAAGAGCAGGAACATCATGAATTGCATTACATGAATAATGGGAACGGAATGGCTGATGAGCATGAAAATGAAGGCCATGGTATTATGGTTGTGGACAGGGAAGCTCCATCCGACCATGGTGACCTTGCTGAGAATCGTGGTGTTATGGTGGATCGAGGAGGGGATAACTGTGATCAGCTCACCCTGTCTTATCAGGGTCAAGTTTATGTTTTTGATTCTGCTTCGCCCGAAAAGGTTCAAGCCGTGTTATTATTATTGGGAGGTACTGAAGTACCTTTACGCGTTCCATCAATCCCAATAACTAATCAACAAAATGATAGGGCACTTGCCAGTGTCCCCCCACGTCAAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGGTTTCGTGAAAAGCGTAAGGAACGTAATTTTGACAAGAAAATTCGGTACACAGTTCGTAAAGAGGTAGCACTTAGAATGCAGCGTAATAAAGGTCAGTTTACGTCTTCTAAATCCATACATGAAGATTCATCATCGGCCATAACTAGTTGGGAATCAAATGAGAGTTGGAGTACAGATGGAAATGGATCCCAACAACAAGAAATTCTCTGCCGACATTGTGGTATTAGTGAGAAGTCTACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCTTGCGGACTGATGTGGGCAAACAAGGGAACTCTGCGGGACCTTTCGAAAGCACCAAACCAGGGTGGACAAGCTTCAACCTTTAACAGAAACGAGAATGTTGATTCTGAGTCCGACCCCAAAAGTGCTTAG 873 45.13 MDDIHASDGRMHISHAQHSMHSQSVQEQEHHELHYMNNGNGMADEHENEGHGIMVVDREAPSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDSASPEKVQAVLLLLGGTEVPLRVPSIPITNQQNDRALASVPPRQSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKSIHEDSSSAITSWESNESWSTDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKAPNQGGQASTFNRNENVDSESDPKSA 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36945036 36950872 - Sed0022209.2 Sed04g2344 710947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2344 290 ProSitePatterns GATA-type zinc finger domain. 222 249 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g2344 290 MobiDBLite consensus disorder prediction 261 290 - -
Sed04g2344 290 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
Sed04g2344 290 CDD ZnF_GATA 222 277 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g2344 290 ProSiteProfiles CCT domain profile. 146 188 IPR010402 GO:0005515(InterPro)
Sed04g2344 290 MobiDBLite consensus disorder prediction 181 215 - -
Sed04g2344 290 PANTHER GATA TRANSCRIPTION FACTOR 28 29 278 IPR045280 GO:0006355(InterPro)
Sed04g2344 290 MobiDBLite consensus disorder prediction 261 280 - -
Sed04g2344 290 SMART GATA_3 216 269 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g2344 290 SMART tify_2 78 113 IPR010399 -
Sed04g2344 290 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 217 271 - -
Sed04g2344 290 Pfam tify domain 84 112 IPR010399 -
Sed04g2344 290 Gene3D - 212 280 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Sed04g2344 290 ProSiteProfiles GATA-type zinc finger domain profile. 216 277 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g2344 290 Pfam CCT motif 146 188 IPR010402 GO:0005515(InterPro)
Sed04g2344 290 Pfam GATA zinc finger 222 258 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1395 Sed-Chr3:8892742 Sed04g2344 Sed-Chr4:36945036 1.90E-55 dispersed
Sed03g1396 Sed-Chr3:8892742 Sed04g2344 Sed-Chr4:36945036 1.90E-55 dispersed
Sed04g2344 Sed-Chr4:36945036 Sed10g1896 Sed-Chr10:35776240 1.10E-54 dispersed
Sed04g2343 Sed-Chr4:36945036 Sed04g2344 Sed-Chr4:36945036 1.70E-148 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38242 PF06203 CCT 8.10E-15 CL0281 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2344 - - - 0.0