Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g2344 | ATGGATGATATTCATGCGAGCGATGGACGGATGCATATCAGCCACGCGCAGCATTCGATGCACTCGCAATCTGTGCAAGAGCAGGAACATCATGAATTGCATTACATGAATAATGGGAACGGAATGGCTGATGAGCATGAAAATGAAGGCCATGGTATTATGGTTGTGGACAGGGAAGCTCCATCCGACCATGGTGACCTTGCTGAGAATCGTGGTGTTATGGTGGATCGAGGAGGGGATAACTGTGATCAGCTCACCCTGTCTTATCAGGGTCAAGTTTATGTTTTTGATTCTGCTTCGCCCGAAAAGGTTCAAGCCGTGTTATTATTATTGGGAGGTACTGAAGTACCTTTACGCGTTCCATCAATCCCAATAACTAATCAACAAAATGATAGGGCACTTGCCAGTGTCCCCCCACGTCAAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGGTTTCGTGAAAAGCGTAAGGAACGTAATTTTGACAAGAAAATTCGGTACACAGTTCGTAAAGAGGTAGCACTTAGAATGCAGCGTAATAAAGGTCAGTTTACGTCTTCTAAATCCATACATGAAGATTCATCATCGGCCATAACTAGTTGGGAATCAAATGAGAGTTGGAGTACAGATGGAAATGGATCCCAACAACAAGAAATTCTCTGCCGACATTGTGGTATTAGTGAGAAGTCTACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCTTGCGGACTGATGTGGGCAAACAAGGGAACTCTGCGGGACCTTTCGAAAGCACCAAACCAGGGTGGACAAGCTTCAACCTTTAACAGAAACGAGAATGTTGATTCTGAGTCCGACCCCAAAAGTGCTTAG | 873 | 45.13 | MDDIHASDGRMHISHAQHSMHSQSVQEQEHHELHYMNNGNGMADEHENEGHGIMVVDREAPSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDSASPEKVQAVLLLLGGTEVPLRVPSIPITNQQNDRALASVPPRQSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKSIHEDSSSAITSWESNESWSTDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKAPNQGGQASTFNRNENVDSESDPKSA | 290 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 36945036 | 36950872 | - | Sed0022209.2 | Sed04g2344 | 710947 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g2344 | 290 | ProSitePatterns | GATA-type zinc finger domain. | 222 | 249 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed04g2344 | 290 | MobiDBLite | consensus disorder prediction | 261 | 290 | - | - | |
Sed04g2344 | 290 | ProSiteProfiles | Tify domain profile. | 78 | 113 | IPR010399 | - | |
Sed04g2344 | 290 | CDD | ZnF_GATA | 222 | 277 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed04g2344 | 290 | ProSiteProfiles | CCT domain profile. | 146 | 188 | IPR010402 | GO:0005515(InterPro) | |
Sed04g2344 | 290 | MobiDBLite | consensus disorder prediction | 181 | 215 | - | - | |
Sed04g2344 | 290 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 29 | 278 | IPR045280 | GO:0006355(InterPro) | |
Sed04g2344 | 290 | MobiDBLite | consensus disorder prediction | 261 | 280 | - | - | |
Sed04g2344 | 290 | SMART | GATA_3 | 216 | 269 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed04g2344 | 290 | SMART | tify_2 | 78 | 113 | IPR010399 | - | |
Sed04g2344 | 290 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 217 | 271 | - | - | |
Sed04g2344 | 290 | Pfam | tify domain | 84 | 112 | IPR010399 | - | |
Sed04g2344 | 290 | Gene3D | - | 212 | 280 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Sed04g2344 | 290 | ProSiteProfiles | GATA-type zinc finger domain profile. | 216 | 277 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed04g2344 | 290 | Pfam | CCT motif | 146 | 188 | IPR010402 | GO:0005515(InterPro) | |
Sed04g2344 | 290 | Pfam | GATA zinc finger | 222 | 258 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g1395 | Sed-Chr3:8892742 | Sed04g2344 | Sed-Chr4:36945036 | 1.90E-55 | dispersed | |
Sed03g1396 | Sed-Chr3:8892742 | Sed04g2344 | Sed-Chr4:36945036 | 1.90E-55 | dispersed | |
Sed04g2344 | Sed-Chr4:36945036 | Sed10g1896 | Sed-Chr10:35776240 | 1.10E-54 | dispersed | |
Sed04g2343 | Sed-Chr4:36945036 | Sed04g2344 | Sed-Chr4:36945036 | 1.70E-148 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38242 | PF06203 | CCT | 8.10E-15 | CL0281 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g2344 | - | - | - | 0.0 |