Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed04g2349 | ATGGCGTCTCGTGGTTCATCCGGTTCGGGTAATGGCCTATTGTCGCTCAATGCTTCCACCTTCGGCCGCCAAGATGATGTTGAATCTGGACTCTCCGTTAATGAGAAGGAGAACGAGGAAGAAGAGGTTGAATCCGATCCTTTCGACATTGACAATACCAAAAATGTCCCTCACGATACACTCAAGCGATGGAGGCAAGCTGCATTGGTGCTTAATGCATCTCGGAGATTTCGATATACTTTGGACTTAAAGAAGGAGGAAGAGAAAGAACAAAGAAGAAGGATGATTAGAGCCCACGCACAAGTCATAAGGGCAGCACTGCTTTTCAAATTGGCAGGGGAACAACAAACTGGCTTCTCAGTATCACCTCCAATGTCAACTGGTGACTATGCCGTTAGTTTAGAACAGCTTGCATCATTGACCCGCGATCAAAATTTTTCTTCTCTACAACAATATGGAGGAGTTAAAGGCTTATCAAATTTATTGAAAACAAATACCGAAAAGGGAATAACGGGAGATGAAGCTGATTTACTGAAAAGAAAAAATGCATTTGGATCCAATACATATCCACGTAAAAAAGGACGGAGTTTCTTGAGATTTCTTTGGGAAGCCTGGCAAGATTTAACTCTAATTATTTTGATTGTTGCTGCAATGGCATCATTAGTTTTGGGGATTAAAACAGAGGGTGTAAAGGTGGGATGGTATGATGGAGGAAGTATTTCCTTTGCTGTGCTTCTTGTCATAACGGTCACAGCGGTTAGTGATTATCGACAATCTCTTCAATTTCAAAATTTGAATGAGGAAAAACAGAACATACAAGTTGAGGTCTTGAGGGATGGTAGAACCTTAAAGGTCTCAATATTTGACCTTGTTGTTGGGGATGTTGTACCTCTTAAAATTGGAGATCAGATTCCTGCTGATGGAATATTGATCACTGGTCATTCACTTGCCATAGATGAATCTAGCATGACAGGAGAAAGCAAGATTGTTCGCAAGGATCAGAAGACACCTTTTATGATGTCTGGTTGTAAGGTTGCAGATGGACTTGGTACTATGATGGTAACTTCTGTTGGAATCAATACTGAATGGGGATTGTTGATGGCAAGTATCTCAGAAGATACTGGGGAAGAAACTCCCTTGCAGGTTCGGTTGAACGGAGTTGCAACTTTCATAGGCATAGTTGGGCTTGCGGTTGCACTTTCTGTGCTAGCTGTTCTTTTGGGCAGATACTTCACTGGAAATACACATGATGCAAAGGGAAACATTGAATTTCAGCGAGGGCATACAAGTCTTGGTGATGCTGTAGATGATGTTATTAAAATATTTACTGTTGCTGTTACTATTGTGGTTGTTGCAGTACCGGAAGGACTTCCTTTGGCGGTCACCCTAACATTAGCATACTCCATGAGGAAAATGATGGCTGATAAGGCATTGGTTCGTAGATTGTCTGCTTGTGAAACTATGGGTTCTGCAACAACAATTTGCAGTGATAAGACTGGAACTTTGACTTTAAATCAGATGACTGTGGTCGAGGCATGTGTTGGCAAGAAAATGATTAATCCCCCAAATGATCCACTGCAGTTGCCCACGTTGGTACTCAATCTGCTATATGAGGGCATTGCTCAGAACAGCACGGGCAATGTTTTTGTGGCTAAGGATGGAACAAGTATAGAAGTCACTGGATCTCCTACTGAAAAGGCTATTTTATCTTGGGCCGTCAAGCTGGGAATGAAGTTTGATGTTGTCAAATCTGAGTCCAAAGTTCTCCATGTTTTCCCTTTCAATTCAGAAAAGAAGCGAGGCGGTGTTGCAATAAAGCGGGCCGACTCAGAAGTTTACATACACTGGAAAGGAGCGGCAGAGATGGTCTTGTCTTCTTGTATAAAGTATGTGGACATGAATGGTGAAGTGCACTCAATGGAAAACAATGAGGATTATTTTAAGGTTGCTATTAGTGACATGGCTGCAAAAAGTTTGCGTTGTGTAGCAATTGCATATAGATTATGCGAGTTGGAGAAGGTTCCAGTAGATGAACAGCATTTGGATCAATGGGATTTGCCTGCTGATGATCTTATTCTGCTTGCAATCGTTGGTATAAAGGATCCTTGCCGCGATGGTGTTAAAGAGGCTGTGAAAGTGTGCACTGATGCAGGTGTCAAGGTTCGCATGGTCACTGGAGACAATATACAGACTGCAAAAGCTATAGCAATCGAGTGTGGAATATTAAATGCAAAAGAAGATGCTTCTGAGCCAACAGTCATTGAGGGAAAAGCATTCCGTGTATTGTCTGAGAAGGAAAGAGAACAAATCGCCCCGAAAATAACGGTGATGGGGAGATCTTCGCCCAATGATAAGCTCTTGCTTGTTCAAGCATTAAGAAAGGGAGGAGACGTTGTTGCTGTAACTGGAGACGGGACTAATGATGCCCCTGCACTCCACGAGGCAGATATCGGTCTTTCTATGGGCATTCAAGGCACTGAAGTTGCAAAAGAAAGTTCTGATATTATTATCTTGGATGATAACTTTGCTTCAGTTGTAAAGGTTGTCAGGTGGGGGCGTTCTGTGTATGCAAACATTCAAAAGTTCATTCAGTTTCAGCTCACTGTAAATGTTGCTGCTCTTGTGATTAATGTTGTTGCAGCTGTGTCATCCGGTGAAGTTCCTTTAAATACTGTGCAGCTTCTATGGGTTAACCTGATCATGGACACACTTGGCGCCCTGGCATTAGCTACTGAACCACCAACAGACCACCTGATGCATCGGTCACCGGTTGGGCGAAGGGAACCCCTTATAACTAATATCATGTGGAGGAATTTGATTGTACAGGCTTTGTATCAAGTTGCTGTACTTCTTGTTCTCAACTTCTATGCCACTGATATTCTTCAATTGAGTAGTGATAGCAGGGAACACGCCTTTAATGTGAAGAATACTGTGATTTTCAATGCATTTGTCCTCTGCCAGATATTCAATGAATTTAATGCTCGAAAACCAGATGAAATGAACGTGTTCAGTGGAGTGACGAAAAATTACCTCTTTATTGGAATAGTTGGAACTACATTCGTGCTACAGATTATCATCGTCGAATTTCTTGGAAAATTTACTAAAACAGTAAAACTTGATGGAAAGCAATGGCTTGTCTGCGTTGCTATCGCCTTTGTGAGCTGGCCGCTGGCAATTGTTGGGAAACTGATCCCAGTTCCGAAGACCCCATTGGCTAAGTACTTCACAAAGCCAATTCAACGGTGCAGAAGGTCACGTGGTGCTTAA | 3267 | 42.33 | MASRGSSGSGNGLLSLNASTFGRQDDVESGLSVNEKENEEEEVESDPFDIDNTKNVPHDTLKRWRQAALVLNASRRFRYTLDLKKEEEKEQRRRMIRAHAQVIRAALLFKLAGEQQTGFSVSPPMSTGDYAVSLEQLASLTRDQNFSSLQQYGGVKGLSNLLKTNTEKGITGDEADLLKRKNAFGSNTYPRKKGRSFLRFLWEAWQDLTLIILIVAAMASLVLGIKTEGVKVGWYDGGSISFAVLLVITVTAVSDYRQSLQFQNLNEEKQNIQVEVLRDGRTLKVSIFDLVVGDVVPLKIGDQIPADGILITGHSLAIDESSMTGESKIVRKDQKTPFMMSGCKVADGLGTMMVTSVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLAVALSVLAVLLGRYFTGNTHDAKGNIEFQRGHTSLGDAVDDVIKIFTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEACVGKKMINPPNDPLQLPTLVLNLLYEGIAQNSTGNVFVAKDGTSIEVTGSPTEKAILSWAVKLGMKFDVVKSESKVLHVFPFNSEKKRGGVAIKRADSEVYIHWKGAAEMVLSSCIKYVDMNGEVHSMENNEDYFKVAISDMAAKSLRCVAIAYRLCELEKVPVDEQHLDQWDLPADDLILLAIVGIKDPCRDGVKEAVKVCTDAGVKVRMVTGDNIQTAKAIAIECGILNAKEDASEPTVIEGKAFRVLSEKEREQIAPKITVMGRSSPNDKLLLVQALRKGGDVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGEVPLNTVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRREPLITNIMWRNLIVQALYQVAVLLVLNFYATDILQLSSDSREHAFNVKNTVIFNAFVLCQIFNEFNARKPDEMNVFSGVTKNYLFIGIVGTTFVLQIIIVEFLGKFTKTVKLDGKQWLVCVAIAFVSWPLAIVGKLIPVPKTPLAKYFTKPIQRCRRSRGA | 1088 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 36975916 | 36996788 | + | Sed0004766.1 | Sed04g2349 | 710952 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed04g2349 | 1088 | Gene3D | - | 492 | 847 | IPR023214 | - | |
| Sed04g2349 | 1088 | FunFam | Calcium-transporting ATPase | 505 | 702 | - | - | |
| Sed04g2349 | 1088 | Pfam | E1-E2 ATPase | 271 | 473 | - | - | |
| Sed04g2349 | 1088 | Gene3D | - | 176 | 371 | - | - | |
| Sed04g2349 | 1088 | FunFam | Calcium-transporting ATPase | 203 | 260 | - | - | |
| Sed04g2349 | 1088 | FunFam | Calcium-transporting ATPase | 819 | 1068 | - | - | |
| Sed04g2349 | 1088 | Pfam | haloacid dehalogenase-like hydrolase | 493 | 816 | - | - | |
| Sed04g2349 | 1088 | SFLD | C1.7: P-type atpase like | 477 | 854 | - | - | |
| Sed04g2349 | 1088 | Gene3D | - | 203 | 1055 | - | - | |
| Sed04g2349 | 1088 | PANTHER | CATION TRANSPORTING ATPASE | 109 | 1066 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
| Sed04g2349 | 1088 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 497 | 503 | IPR018303 | - | |
| Sed04g2349 | 1088 | MobiDBLite | consensus disorder prediction | 1 | 54 | - | - | |
| Sed04g2349 | 1088 | NCBIfam | HAD-IC family P-type ATPase | 435 | 517 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed04g2349 | 1088 | NCBIfam | HAD-IC family P-type ATPase | 769 | 882 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed04g2349 | 1088 | FunFam | Calcium-transporting ATPase | 694 | 847 | - | - | |
| Sed04g2349 | 1088 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 141 | 1066 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) | |
| Sed04g2349 | 1088 | SFLD | p-type atpase | 477 | 854 | IPR044492 | - | |
| Sed04g2349 | 1088 | PRINTS | P-type cation-transporting ATPase superfamily signature | 495 | 509 | - | - | |
| Sed04g2349 | 1088 | PRINTS | P-type cation-transporting ATPase superfamily signature | 717 | 727 | - | - | |
| Sed04g2349 | 1088 | PRINTS | P-type cation-transporting ATPase superfamily signature | 802 | 821 | - | - | |
| Sed04g2349 | 1088 | PRINTS | P-type cation-transporting ATPase superfamily signature | 319 | 333 | - | - | |
| Sed04g2349 | 1088 | PRINTS | P-type cation-transporting ATPase superfamily signature | 695 | 706 | - | - | |
| Sed04g2349 | 1088 | PRINTS | P-type cation-transporting ATPase superfamily signature | 826 | 838 | - | - | |
| Sed04g2349 | 1088 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 152 | 1066 | IPR023298 | - | |
| Sed04g2349 | 1088 | Pfam | Cation transporter/ATPase, N-terminus | 152 | 219 | IPR004014 | - | |
| Sed04g2349 | 1088 | CDD | P-type_ATPase_Ca_PMCA-like | 177 | 935 | - | - | |
| Sed04g2349 | 1088 | Pfam | Cation transporting ATPase, C-terminus | 887 | 1064 | IPR006068 | - | |
| Sed04g2349 | 1088 | FunFam | Calcium-transporting ATPase 9 plasma membrane-type | 349 | 519 | - | - | |
| Sed04g2349 | 1088 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 502 | 699 | IPR023299 | GO:0000166(InterPro) | |
| Sed04g2349 | 1088 | FunFam | Calcium-transporting ATPase | 250 | 371 | - | - | |
| Sed04g2349 | 1088 | SMART | Cation_ATPase_N_a_2 | 151 | 225 | IPR004014 | - | |
| Sed04g2349 | 1088 | FunFam | Calcium-transporting ATPase | 56 | 112 | - | - | |
| Sed04g2349 | 1088 | SUPERFAMILY | Calcium ATPase, transduction domain A | 271 | 368 | IPR008250 | - | |
| Sed04g2349 | 1088 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Sed04g2349 | 1088 | Gene3D | - | 505 | 702 | IPR023299 | GO:0000166(InterPro) | |
| Sed04g2349 | 1088 | SUPERFAMILY | HAD-like | 493 | 907 | IPR036412 | - | |
| Sed04g2349 | 1088 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 45 | 88 | IPR024750 | GO:0005516(InterPro) | |
| Sed04g2349 | 1088 | Gene3D | - | 58 | 111 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed04g2349 | Sed-Chr4:36975916 | Sed11g0591 | Sed-Chr11:6913248 | 0.00E+00 | dispersed | |
| Sed04g2349 | Sed-Chr4:36975916 | Sed04g2350 | Sed-Chr4:36975916 | 0.00E+00 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed04g2349 | K01537 | - | csv:101214801 | 1822.36 |