Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2350 ATGGCGTCTCGTGGTTCATCCGGTTCGGGTAATGGCCTATTGTCGCTCAATGCTTCCACCTTCGGCCGCCAAGATGATGTTGAATCTGGACTCTCCGTTAATGAGAAGGAGAACGAGGAAGAAGAGGTTGAATCCGATCCTTTCGACATTGACAATACCAAAAATGTCCCTCACGATACACTCAAGCGATGGAGGCAAGCTGCATTGGTGCTTAATGCATCTCGGAGATTTCGATATACTTTGGACTTAAAGAAGGAGGAAGAGAAAGAACAAAGAAGAAGGATGATTAGAGCCCACGCACAAGTCATAAGGGCAGCACTGCTTTTCAAATTGGCAGGGGAACAACAAACTGGCTTCTCAGTATCACCTCCAATGTCAACTGGTGACTATGCCGTTAGTTTAGAACAGCTTGCATCATTGACCCGCGATCAAAATTTTTCTTCTCTACAACAATATGGAGGAGTTAAAGGCTTATCAAATTTATTGAAAACAAATACCGAAAAGGGAATAACGGGAGATGAAGCTGATTTACTGAAAAGAAAAAATGCATTTGGATCCAATACATATCCACGTAAAAAAGGACGGAGTTTCTTGAGATTTCTTTGGGAAGCCTGGCAAGATTTAACTCTAATTATTTTGATTGTTGCTGCAATGGCATCATTAGTTTTGGGGATTAAAACAGAGGGTGTAAAGGTGGGATGGTATGATGGAGGAAGTATTTCCTTTGCTGTGCTTCTTGTCATAACGGTCACAGCGGTTAGTGATTATCGACAATCTCTTCAATTTCAAAATTTGAATGAGGAAAAACAGAACATACAAGTTGAGGTCTTGAGGGATGGTAGAACCTTAAAGGTCTCAATATTTGACCTTGTTGTTGGGGATGTTGTACCTCTTAAAATTGGAGATCAGATTCCTGCTGATGGAATATTGATCACTGGTCATTCACTTGCCATAGATGAATCTAGCATGACAGGAGAAAGCAAGATTGTTCGCAAGGATCAGAAGACACCTTTTATGATGTCTGGTTGTAAGGTTGCAGATGGACTTGGTACTATGATGGTAACTTCTGTTGGAATCAATACTGAATGGGGATTGTTGATGGCAAGTATCTCAGAAGATACTGGGGAAGAAACTCCCTTGCAGGTTCGGTTGAACGGAGTTGCAACTTTCATAGGCATAGTTGGGCTTGCGGTTGCACTTTCTGTGCTAGCTGTTCTTTTGGGCAGATACTTCACTGGAAATACACATGATGCAAAGGGAAACATTGAATTTCAGCGAGGGCATACAAGTCTTGGTGATGCTGTAGATGATGTTATTAAAATATTTACTGTTGCTGTTACTATTGTGGTTGTTGCAGTACCGGAAGGACTTCCTTTGGCGGTCACCCTAACATTAGCATACTCCATGAGGAAAATGATGGCTGATAAGGCATTGGTTCGTAGATTGTCTGCTTGTGAAACTATGGGTTCTGCAACAACAATTTGCAGTGATAAGACTGGAACTTTGACTTTAAATCAGATGACTGTGGTCGAGGCATGTGTTGGCAAGAAAATGATTAATCCCCCAAATGATCCACTGCAGTTGCCCACGTTGGTACTCAATCTGCTATATGAGGGCATTGCTCAGAACAGCACGGGCAATGTTTTTGTGGCTAAGGATGGAACAAGTATAGAAGTCACTGGATCTCCTACTGAAAAGGCTATTTTATCTTGGGCCGTCAAGCTGGGAATGAAGTTTGATGTTGTCAAATCTGAGTCCAAAGTTCTCCATGTTTTCCCTTTCAATTCAGAAAAGAAGCGAGGCGGTGTTGCAATAAAGCGGGCCGACTCAGAAGTTTACATACACTGGAAAGGAGCGGCAGAGATGGTCTTGTCTTCTTGTATAAAGTATGTGGACATGAATGGTGAAGTGCACTCAATGGAAAACAATGAGGATTATTTTAAGGTTGCTATTAGTGACATGGCTGCAAAAAGTTTGCGTTGTGTAGCAATTGCATATAGATTATGCGAGTTGGAGAAGGTTCCAGTAGATGAACAGCATTTGGATCAATGGGATTTGCCTGCTGATGATCTTATTCTGCTTGCAATCGTTGGTATAAAGGATCCTTGCCGCGATGGTGTTAAAGAGGCTGTGAAAGTGTGCACTGATGCAGGTGTCAAGGTTCGCATGGTCACTGGAGACAATATACAGACTGCAAAAGCTATAGCAATCGAGTGTGGAATATTAAATGCAAAAGAAGATGCTTCTGAGCCAACAGTCATTGAGGGAAAAGCATTCCGTGTATTGTCTGAGAAGGAAAGAGAACAAATCGCCCCGAAAATAACGGTGATGGGGAGATCTTCGCCCAATGATAAGCTCTTGCTTGTTCAAGCATTAAGAAAGGGAGGAGACGTTGTTGCTGTAACTGGAGACGGGACTAATGATGCCCCTGCACTCCACGAGGCAGATATCGGTCTTTCTATGGGCATTCAAGGCACTGAAGTTGCAAAAGAAAGTTCTGATATTATTATCTTGGATGATAACTTTGCTTCAGTTGTAAAGGTTGTCAGGTGGGGGCGTTCTGTGTATGCAAACATTCAAAAGTTCATTCAGTTTCAGCTCACTGTAAATGTTGCTGCTCTTGTGATTAATGTTGTTGCAGCTGTGTCATCCGGTGAAGTTCCTTTAAATACTGTGCAGCTTCTATGGGTTAACCTGATCATGGACACACTTGGCGCCCTGGCATTAGCTACTGAACCACCAACAGACCACCTGATGCATCGGTCACCGGTTGGGCGAAGGGAACCCCTTATAACTAATATCATGTGGAGGAATTTGATTGTACAGGCTTTGTATCAAGTTGCTGTACTTCTTGTTCTCAACTTCTATGCCACTGATATTCTTCAATTGAGTAGTGATAGCAGGGAACACGCCTTTAATGTGAAGAATACTGTGATTTTCAATGCATTTGTCCTCTGCCAGATATTCAATGAATTTAATGCTCGAAAACCAGATGAAATGAACGTGTTCAGTGGAGTGACGAAAAATTACCTCTTTATTGGAATAGTTGGAACTACATTCGTGCTACAGATTATCATCGTCGAATTTCTTGGAAAATTTACTAAAACAGTAAAACTTGATGGAAAGCAATGGCTTGTCTGCGTTGCTATCGCCTTTGTGAGGTTGGATTAA 3171 42.01 MASRGSSGSGNGLLSLNASTFGRQDDVESGLSVNEKENEEEEVESDPFDIDNTKNVPHDTLKRWRQAALVLNASRRFRYTLDLKKEEEKEQRRRMIRAHAQVIRAALLFKLAGEQQTGFSVSPPMSTGDYAVSLEQLASLTRDQNFSSLQQYGGVKGLSNLLKTNTEKGITGDEADLLKRKNAFGSNTYPRKKGRSFLRFLWEAWQDLTLIILIVAAMASLVLGIKTEGVKVGWYDGGSISFAVLLVITVTAVSDYRQSLQFQNLNEEKQNIQVEVLRDGRTLKVSIFDLVVGDVVPLKIGDQIPADGILITGHSLAIDESSMTGESKIVRKDQKTPFMMSGCKVADGLGTMMVTSVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLAVALSVLAVLLGRYFTGNTHDAKGNIEFQRGHTSLGDAVDDVIKIFTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEACVGKKMINPPNDPLQLPTLVLNLLYEGIAQNSTGNVFVAKDGTSIEVTGSPTEKAILSWAVKLGMKFDVVKSESKVLHVFPFNSEKKRGGVAIKRADSEVYIHWKGAAEMVLSSCIKYVDMNGEVHSMENNEDYFKVAISDMAAKSLRCVAIAYRLCELEKVPVDEQHLDQWDLPADDLILLAIVGIKDPCRDGVKEAVKVCTDAGVKVRMVTGDNIQTAKAIAIECGILNAKEDASEPTVIEGKAFRVLSEKEREQIAPKITVMGRSSPNDKLLLVQALRKGGDVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGEVPLNTVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRREPLITNIMWRNLIVQALYQVAVLLVLNFYATDILQLSSDSREHAFNVKNTVIFNAFVLCQIFNEFNARKPDEMNVFSGVTKNYLFIGIVGTTFVLQIIIVEFLGKFTKTVKLDGKQWLVCVAIAFVRLD 1056
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36975916 36996788 + Sed0004766.2 Sed04g2350 710953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2350 1056 Pfam haloacid dehalogenase-like hydrolase 493 816 - -
Sed04g2350 1056 Gene3D - 176 371 - -
Sed04g2350 1056 FunFam Calcium-transporting ATPase 505 702 - -
Sed04g2350 1056 Pfam Ca2+-ATPase N terminal autoinhibitory domain 45 88 IPR024750 GO:0005516(InterPro)
Sed04g2350 1056 Gene3D - 492 847 IPR023214 -
Sed04g2350 1056 PRINTS Sodium/potassium-transporting ATPase signature 614 632 - -
Sed04g2350 1056 PRINTS Sodium/potassium-transporting ATPase signature 874 895 - -
Sed04g2350 1056 PRINTS Sodium/potassium-transporting ATPase signature 238 258 - -
Sed04g2350 1056 PRINTS Sodium/potassium-transporting ATPase signature 488 509 - -
Sed04g2350 1056 Gene3D - 58 111 - -
Sed04g2350 1056 PRINTS P-type cation-transporting ATPase superfamily signature 495 509 - -
Sed04g2350 1056 PRINTS P-type cation-transporting ATPase superfamily signature 802 821 - -
Sed04g2350 1056 PRINTS P-type cation-transporting ATPase superfamily signature 695 706 - -
Sed04g2350 1056 PRINTS P-type cation-transporting ATPase superfamily signature 717 727 - -
Sed04g2350 1056 PRINTS P-type cation-transporting ATPase superfamily signature 826 838 - -
Sed04g2350 1056 PRINTS P-type cation-transporting ATPase superfamily signature 319 333 - -
Sed04g2350 1056 SUPERFAMILY Calcium ATPase, transmembrane domain M 152 1053 IPR023298 -
Sed04g2350 1056 Pfam Cation transporter/ATPase, N-terminus 152 219 IPR004014 -
Sed04g2350 1056 ProSitePatterns E1-E2 ATPases phosphorylation site. 497 503 IPR018303 -
Sed04g2350 1056 MobiDBLite consensus disorder prediction 1 54 - -
Sed04g2350 1056 PANTHER CATION TRANSPORTING ATPASE 108 1054 - GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER)
Sed04g2350 1056 NCBIfam HAD-IC family P-type ATPase 769 882 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed04g2350 1056 NCBIfam HAD-IC family P-type ATPase 435 517 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed04g2350 1056 SFLD p-type atpase 477 854 IPR044492 -
Sed04g2350 1056 FunFam Calcium-transporting ATPase 203 260 - -
Sed04g2350 1056 CDD P-type_ATPase_Ca_PMCA-like 177 935 - -
Sed04g2350 1056 SUPERFAMILY Calcium ATPase, transduction domain A 271 368 IPR008250 -
Sed04g2350 1056 Pfam E1-E2 ATPase 271 473 - -
Sed04g2350 1056 NCBIfam calcium-translocating P-type ATPase, PMCA-type 141 1055 IPR006408 GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro)
Sed04g2350 1056 Gene3D - 203 1053 - -
Sed04g2350 1056 FunFam Calcium-transporting ATPase 250 371 - -
Sed04g2350 1056 SUPERFAMILY HAD-like 493 907 IPR036412 -
Sed04g2350 1056 SMART Cation_ATPase_N_a_2 151 225 IPR004014 -
Sed04g2350 1056 FunFam Calcium-transporting ATPase 694 847 - -
Sed04g2350 1056 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 502 699 IPR023299 GO:0000166(InterPro)
Sed04g2350 1056 Gene3D - 505 702 IPR023299 GO:0000166(InterPro)
Sed04g2350 1056 MobiDBLite consensus disorder prediction 1 27 - -
Sed04g2350 1056 SFLD C1.7: P-type atpase like 477 854 - -
Sed04g2350 1056 FunFam Calcium-transporting ATPase 819 1056 - -
Sed04g2350 1056 FunFam Calcium-transporting ATPase 56 112 - -
Sed04g2350 1056 FunFam Calcium-transporting ATPase 9 plasma membrane-type 349 519 - -
Sed04g2350 1056 Pfam Cation transporting ATPase, C-terminus 887 1053 IPR006068 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2350 Sed-Chr4:36975916 Sed11g0591 Sed-Chr11:6913248 0.00E+00 dispersed
Sed04g2349 Sed-Chr4:36975916 Sed04g2350 Sed-Chr4:36975916 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2350 K01537 - csv:101214801 1756.5