Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2358 ATGAAATTGAGGAACTGGACTCAGCTAGTTTCTCTAATCCTTGTTTGCTTTCTGGGTTTGAATCCAAGCTCCATTAATGGAGTCACAGATCCTTCAGATGCTTCTGCTTTAAAAGTTTTGTACACCAGCTTGAACTCGAACCCTCAGTTGACCCAATGGAGCGCTAATGGAGATGACCCATGTGGTCAATCATGGAAAGGGATTACTTGTTCTAACTCACGGGTTACAGAAATAAACTTGTCTGGCCTTGGGCTCAGTGGATCGTTGGGATACCAGCTTACAAGTTTGACAAAGTTAACCAACTTAGATATGAGCAATAACAATATTGGAGGCGAGATAGGCTACAACCTTCCACCAAACCTGATGAGACTAAATCTTGCTCGAAACAACTTCAATAAAGGCATCCCTTATTCCATTTCCTTGATGACTACTCTTCAATACCTAAATCTCAGTCATAATCAGCTTCAGGATCCATTAAATGATATGTTTGGGCAGCTTACTTCCCTATCCACATTGGATTTGTCTTTCAATGCTATATCAGGCGCACTGCCTTCGACTTTTAGCTCTCTGACTGGTATCATTTCTATGTATTTGCAAAACAATCAGTTCACTGGAACAATTGATGTCCTTGCAAAGCTTCCTCTTGATAACCTGAATGTTGAAAATAACCGTTTCACCGGCTGGATTCCCGATCTACTGAAAAACATCAATCTGCAGTCAAATGGAAACTTCTGGAACTCGAGTCCAGCACCCCCTCCACCACCCGGGACACCTCCAGCCACCAGAAGGAGCCGAAGTCGCAATCCTGGTGGCAACAGTCCATCAAACGGTGGTTCTGGTCAAGGCCAGAAATCAGGAATTGGTGGTGGTGCCATTGCAGGTATTATCATCTCTGTGCTTGTTGTTGGAGCTGTACTAGCATTCTTCCTCGTTAGGAGGAAGAGATCCAAGAGATCGTCTTCCGACATCGAAAAGCTTGACAATCAACCCCTGCAACCTCTTAAAATGACTGCCGCACAAGAAATGAAGCCTGAAGAGACTTCCTCCACATTTTATCCAACAACATTTGACACTTCTCCTGCAATTAATCTTAAACCCCCACCGAGTGATCGTCATAAATCATTTGATGAAGACGACTTCGCAAAAAGACCTGTCGTCAAGAAGGCTAGTGCAGTTCCTAGCAATGTCAAGTCATATTCAGTAGCAGACCTGCAAATGGCTACAGGAAGCTTCAATGTTGAAAATCTTCTTGGCGAGGGATTGTTTGGACGCGTTTTTCGGGCTGAGTTTGCTGATGGGAAGATTCTCGCCGTGAAAAAAATAAACTCATCTTCTCTACCTAGGGAATTATCAGAAGATTTCACTGACATTGTATCAAAAGTGTCCCAGTTACATCATCCCAATATAACTGAACTCGTGGGTTATTGCTCAGAGCATGGGCAGCATTTGCTTGTGTATGAGTTCCATAAAAATGGCTCGCTCTATGACTTCTTGCATCTATCAGATGAATACAACCTGCCACTGACATGGAATTCTCGTGTTAAGATCGCGTTGGGAACAGCACGTGCATTAGAGTATCTTCATGAAGTTTGCTCCCCATCTATTGTTCATAGAAACATCAAGTCTGGTAACATATTGCTGGATGCCGAACTCAGCCCTCACCTTTCTGATTCTGGACTAGAAAGCTTTGTACCAAATGAAGATCAGGCACTGGATCACAATGCAAGTTCAGGATACACTGCCCCTGAAGTTACCATGTCTGGCCAATACACTCTCCAAAGCGACGTCTACAGTTTTGGAGTAGTGATGTTGGAACTTCTGACCGGACGCAAACCATTCGACAGTTCAAGGCCAAGGACTGAGCAATCGTTGGTTCGGTGGGCTACGCCTCAGCTCCATGACATTGATGCCTTGGCCAAGATGGTTGATCCAGAACTCAAAGGGCTTTATCCAGTTAAATCTCTATCCCGATTCGCGGATGTGATTGCACTTTGTGTCCAGACCGAACCGGAGTTCAGACCTCCAATGTCGGATGTGGTCGAAGCATTGGTTCGTCTGGTGCAGCGAGCTAACATGAGCAAGAGAACATTTGGAAATGACAATGCAGCATCTCCAAGAGGGGACATGGGTGGGGAGGACACACCATAA 2148 44.69 MKLRNWTQLVSLILVCFLGLNPSSINGVTDPSDASALKVLYTSLNSNPQLTQWSANGDDPCGQSWKGITCSNSRVTEINLSGLGLSGSLGYQLTSLTKLTNLDMSNNNIGGEIGYNLPPNLMRLNLARNNFNKGIPYSISLMTTLQYLNLSHNQLQDPLNDMFGQLTSLSTLDLSFNAISGALPSTFSSLTGIISMYLQNNQFTGTIDVLAKLPLDNLNVENNRFTGWIPDLLKNINLQSNGNFWNSSPAPPPPPGTPPATRRSRSRNPGGNSPSNGGSGQGQKSGIGGGAIAGIIISVLVVGAVLAFFLVRRKRSKRSSSDIEKLDNQPLQPLKMTAAQEMKPEETSSTFYPTTFDTSPAINLKPPPSDRHKSFDEDDFAKRPVVKKASAVPSNVKSYSVADLQMATGSFNVENLLGEGLFGRVFRAEFADGKILAVKKINSSSLPRELSEDFTDIVSKVSQLHHPNITELVGYCSEHGQHLLVYEFHKNGSLYDFLHLSDEYNLPLTWNSRVKIALGTARALEYLHEVCSPSIVHRNIKSGNILLDAELSPHLSDSGLESFVPNEDQALDHNASSGYTAPEVTMSGQYTLQSDVYSFGVVMLELLTGRKPFDSSRPRTEQSLVRWATPQLHDIDALAKMVDPELKGLYPVKSLSRFADVIALCVQTEPEFRPPMSDVVEALVRLVQRANMSKRTFGNDNAASPRGDMGGEDTP 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37053158 37059872 + Sed0011888.1 Sed04g2358 710961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2358 715 MobiDBLite consensus disorder prediction 339 376 - -
Sed04g2358 715 MobiDBLite consensus disorder prediction 243 285 - -
Sed04g2358 715 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 30 256 - -
Sed04g2358 715 ProSitePatterns Protein kinases ATP-binding region signature. 417 440 IPR017441 GO:0005524(InterPro)
Sed04g2358 715 Gene3D Ribonuclease Inhibitor 182 247 IPR032675 -
Sed04g2358 715 MobiDBLite consensus disorder prediction 342 362 - -
Sed04g2358 715 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 376 488 - -
Sed04g2358 715 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 489 697 - -
Sed04g2358 715 Gene3D Ribonuclease Inhibitor 31 181 IPR032675 -
Sed04g2358 715 ProSiteProfiles Protein kinase domain profile. 411 686 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g2358 715 SUPERFAMILY Protein kinase-like (PK-like) 393 683 IPR011009 -
Sed04g2358 715 Pfam Leucine rich repeat 119 179 IPR001611 GO:0005515(InterPro)
Sed04g2358 715 SMART LRR_typ_2 166 189 IPR003591 -
Sed04g2358 715 SMART LRR_typ_2 142 165 IPR003591 -
Sed04g2358 715 SMART LRR_typ_2 96 124 IPR003591 -
Sed04g2358 715 MobiDBLite consensus disorder prediction 696 715 - -
Sed04g2358 715 CDD STKc_IRAK 417 686 - -
Sed04g2358 715 SUPERFAMILY L domain-like 30 235 - -
Sed04g2358 715 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 162 688 IPR046959 -
Sed04g2358 715 Pfam Protein tyrosine and serine/threonine kinase 413 683 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g2358 715 Gene3D Transferase(Phosphotransferase) domain 1 490 705 - -
Sed04g2358 715 MobiDBLite consensus disorder prediction 261 283 - -
Sed04g2358 715 Pfam Leucine rich repeat N-terminal domain 31 71 IPR013210 -
Sed04g2358 715 Gene3D Phosphorylase Kinase; domain 1 375 488 - -
Sed04g2358 715 Pfam Leucine Rich repeat 96 114 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2358 Sed-Chr4:37053158 Sed06g2277 Sed-Chr6:46301876 2.90E-215 dispersed
Sed04g2358 Sed-Chr4:37053158 Sed01g1998 Sed-Chr1:14944669 1.70E-125 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79035 PF07714 PK_Tyr_Ser-Thr 8.30E-43 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2358 - - - 0.0