Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2368 ATGGACGAAAAAGACCCCATCGCCGCCGGAATCCCAAACTCCGGCAACAACCCCAAAAAACCCCACAAAAACCCCAAGCTCAAAATCCTCGCCCTCTTCCTCCTCATCGGTGCCGTCGTCGCCATCGTCGCCGGCATCACCACCTCCAAGTCCTCCGGACACCGCACAGAATCCACACATGCCATCCTAAAGAGCACGTGCGGGAGCACGCGGTATCCGGAGCTGTGTTTTTCGAGCATTTCGAAAACCGAAGGGGCGGTCGCGAAAGTGAGGAACCAAAAGGACGTGATCGAGCTCTCGATAAACATAACGGTCGAGGCCGTGGAGGAGAATTACTTTCGAGTGCAGAAATTGGCGGCGTTTAAGAACATTACGCGGAGGGAGAGAATTGCGCTTCATGATTGTCTTGAAACCATTGATGAAACTCTTGATGAGCTTCATAAGGCCCTTGTGGACCTCCATGAATACCCTAATAAGAAGAGCTTGAACCAGCATGCTGATGATCTTAAGACCTTGCTTAGTTCCGCCATTACAAATCAGGAAACATGTCTCGACGGGTTTTCCCACGAAGGCGCGGACAAGAGCTTGCGAGAGAAACTAAAAGAGGGCCAAACGCACGTAGAGCACATGTGCAGCAATGCACTAGCCATGATTAAAAACATGACAGACACAGACATAGCCAACTACGAGGCCAAAATGGGAAAATTAACCAACAGAAAACAGCTCAAGGAAGACGGCGGCGGTGACGACGACAACGTACAGTGGCCGGAGTGGCTGTCGGCCGGTGACCGGCGGCTGCTCCAGTCGTCCTCCGTCACGCCCAACGTGGTCGTGGCGGCGGACGGCAGCGGTAACTTCAAGACCGTGTCGGCCGCCGTGGCCGCCGCGCCGGAGAAAAGTAGCAAAAGATATGTGATAAGAATTAAAGCTGGGGTTTATAGAGAAAATGTGGATGTGTCGAAGAAGAAAACGAATATAATGTTCATTGGAGATGGACGGAAAAACACTATAATTACCGGTAGCCGGAATGTCGTCGACGGCAGCACCACTTTTAACTCTGCAACCGTCGCTGCGGTGGGGGAGAAATTCCTAGCGCGTGACATCACGTTCCAGAACACGGCGGGTCCTTCGAAGCACCAAGCGGTGGCGCTGCGCGTGGGATCGGATCTGTCCGCCTTCTTCAACTGCGACATGTTGGCGTATCAAGACACGCTCTACGTCCACTCCAACCGCCAATTCTTCGTCAACTGCCTCATCTCCGGCACCGTCGACTTCATCTTCGGCAACGCGGCGGCGGTTTTCCAGGACTGTGACATCCACGCGCGCCGGCCCAACTCCGGCCAGAAAAACATGGTCACGGCCCAGGGCCGGTCCGACCCCAACCAGAACACCGGCATCGTCATTCAAAAATCCCGGATCGGCGCCACGTCGGATCTCGGCCCGGTCCAGAAGAGCTTCCCGACTTTCCTGGGCCGGCCCTGGAAGGAGTATTCCAGAACCGTGATTATGCAGTCAACGATTAGTGACGTCATCGACCCGAAGGGCTGGCACGAGTGGAGCGGCAGCTTCGCGTTGAACACTTTGTTTTACGCCGAGTTTCAGAATACTGGACCGGGCGCTTCGACCGGCGGTCGGGTGACGTGGAAGGGGTTCAGGGTATTGAAGAGTGCCACGGAGGCTCAGGCTTTTACTGCGGGTAAATTCATTGGCGGTGGCGGTTGGTTGTCGGCTACTGGTTTCCCTTTCTCTCTTGGGCTTTGA 1761 54.86 MDEKDPIAAGIPNSGNNPKKPHKNPKLKILALFLLIGAVVAIVAGITTSKSSGHRTESTHAILKSTCGSTRYPELCFSSISKTEGAVAKVRNQKDVIELSINITVEAVEENYFRVQKLAAFKNITRRERIALHDCLETIDETLDELHKALVDLHEYPNKKSLNQHADDLKTLLSSAITNQETCLDGFSHEGADKSLREKLKEGQTHVEHMCSNALAMIKNMTDTDIANYEAKMGKLTNRKQLKEDGGGDDDNVQWPEWLSAGDRRLLQSSSVTPNVVVAADGSGNFKTVSAAVAAAPEKSSKRYVIRIKAGVYRENVDVSKKKTNIMFIGDGRKNTIITGSRNVVDGSTTFNSATVAAVGEKFLARDITFQNTAGPSKHQAVALRVGSDLSAFFNCDMLAYQDTLYVHSNRQFFVNCLISGTVDFIFGNAAAVFQDCDIHARRPNSGQKNMVTAQGRSDPNQNTGIVIQKSRIGATSDLGPVQKSFPTFLGRPWKEYSRTVIMQSTISDVIDPKGWHEWSGSFALNTLFYAEFQNTGPGASTGGRVTWKGFRVLKSATEAQAFTAGKFIGGGGWLSATGFPFSLGL 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37098954 37104732 + Sed0007675.1 Sed04g2368 710971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2368 586 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 62 222 IPR035513 -
Sed04g2368 586 Pfam Plant invertase/pectin methylesterase inhibitor 62 217 IPR006501 GO:0004857(InterPro)
Sed04g2368 586 Gene3D Invertase/pectin methylesterase inhibitor family protein 59 222 IPR035513 -
Sed04g2368 586 SUPERFAMILY Pectin lyase-like 272 585 IPR011050 -
Sed04g2368 586 Pfam Pectinesterase 275 571 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Sed04g2368 586 PANTHER PECTINESTERASE 31 576 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Sed04g2368 586 NCBIfam pectinesterase inhibitor domain 35 221 IPR006501 GO:0004857(InterPro)
Sed04g2368 586 ProSitePatterns Pectinesterase signature 1. 300 319 IPR018040 -
Sed04g2368 586 ProSitePatterns Pectinesterase signature 2. 419 428 IPR033131 -
Sed04g2368 586 Gene3D - 269 586 IPR012334 -
Sed04g2368 586 FunFam Pectinesterase 59 222 - -
Sed04g2368 586 SMART PMEI_2 58 217 IPR006501 GO:0004857(InterPro)
Sed04g2368 586 MobiDBLite consensus disorder prediction 1 22 - -
Sed04g2368 586 FunFam Pectinesterase 269 586 - -
Sed04g2368 586 CDD PMEI-like_3 65 222 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2368 Sed-Chr4:37098954 Sed06g0038 Sed-Chr6:224580 1.90E-204 dispersed
Sed05g3353 Sed-Chr5:42806010 Sed04g2368 Sed-Chr4:37098954 2.00E-86 transposed
Sed08g2532 Sed-Chr8:38031839 Sed04g2368 Sed-Chr4:37098954 7.00E-74 transposed
Sed09g0951 Sed-Chr9:31083975 Sed04g2368 Sed-Chr4:37098954 9.90E-169 transposed
Sed14g1360 Sed-Chr14:22453067 Sed04g2368 Sed-Chr4:37098954 3.00E-122 transposed
Sed04g2368 Sed-Chr4:37098954 Sed09g0254 Sed-Chr9:2032683 2.30E-109 wgd
Sed04g2368 Sed-Chr4:37098954 Sed09g1726 Sed-Chr9:40469150 2.70E-267 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2368 K01051 - csv:101212388 966.066