Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2373 ATGTGGTGGAGATCGGCCTCTTTCATCCTCGACAAGCAGCACCACCGCCAAACGGAAGAAGCCCTTTCTATCTCCCCGCCCGCTCACTCTTCTTCCATGGCGGACACTTTCCAAAACCCTAACCCTAACCCTAAAATTTCTGCCTATTACCAAAACAGGGCCGCCCACACCGCCGTCGTCACCAGCGATTGGCTCGCCCAGGCGCAGGCCGCTGTCGGCTTCCAATCCGACGAGCCGTTGCTGTCGGAAACTGACGGTAGAGACTCTGAATCCGGTAAGCCGTTTAGTGTGATCGATGAGTTTAATAACTGGCGGAAACAGCCGGATTTGGCTGAGGCCGTTGCCGCCATTCGGGCTTTGGCGGCTGTTATACGGTCCAGTCAGGCCACGACTATGATGGAGCTTGAAATTGAGCTCAAGAAGGCCTCCGACTCTCTGAAATCGTGGGATATAACTTCAATATCATTAACAGCTGGCTGTGACTTGTTCATGCGGTATGTTACTCGAACAGCGGCCTTAGAATACGAGGACTTCAAGTCTGCAAAGTCTCGCTTGATTGAACGTGCAGAAAAGTTCGGGGAGATATCTTGTAAGGCACGGAGAATTATTGCAATGCTGAGTCAGGATTTTATTTTTGATGGCTGTACAATTTTGGTTCATGGTTTCTCTAGAGTTGTTATGGAAGTTCTGAGGTTGGCTGCGCAGAATAAGAAGCTCTTTAGAGTATTTTGTACAGAAGGAAGACCAGACAGGACAGGTTTACGTCTATCCAATGAGCTCGCTAAACTTGATGTCCCGGTAAAGCTCTTAATTGATTCAGCAGTAGCATATACGATGGATGAGGTTGATATGGTTCTAGTTGGAGCGGATGCAGTAGTTGAAAGTGGAGGTATAATCAACATGATGGGCACCTATCAAATTGCATTAGTGGCTCATAGCATGAACAAACCGGTTTATGTGGCTGCTGAGAGTTATAAGTTTGCTCGACTCTACCCGTTGGATCAAAAAGATATGGCCCCTGCCCTGCGTCCCATTGATTTTGGGGTTCCTATCCCATCCAAGGTCGAGGTCGAAAAATCTGCTCGAGACTATACACCGCCTCAATATCTTACTCTTCTATTTACAGATCTGGGAGTTCTCTCTCCATCTGTGGTGAGTGACGAGCTTATCCAACTATATTTATAG 1185 47.76 MWWRSASFILDKQHHRQTEEALSISPPAHSSSMADTFQNPNPNPKISAYYQNRAAHTAVVTSDWLAQAQAAVGFQSDEPLLSETDGRDSESGKPFSVIDEFNNWRKQPDLAEAVAAIRALAAVIRSSQATTMMELEIELKKASDSLKSWDITSISLTAGCDLFMRYVTRTAALEYEDFKSAKSRLIERAEKFGEISCKARRIIAMLSQDFIFDGCTILVHGFSRVVMEVLRLAAQNKKLFRVFCTEGRPDRTGLRLSNELAKLDVPVKLLIDSAVAYTMDEVDMVLVGADAVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDMAPALRPIDFGVPIPSKVEVEKSARDYTPPQYLTLLFTDLGVLSPSVVSDELIQLYL 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37138985 37144365 + Sed0028223.1 Sed04g2373 710976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2373 394 MobiDBLite consensus disorder prediction 16 40 - -
Sed04g2373 394 Pfam Initiation factor 2 subunit family 107 382 IPR000649 GO:0044237(InterPro)
Sed04g2373 394 SUPERFAMILY NagB/RpiA/CoA transferase-like 96 393 IPR037171 -
Sed04g2373 394 Gene3D - 94 195 IPR042528 -
Sed04g2373 394 FunFam Translation initiation factor eIF-2B subunit alpha 198 394 - -
Sed04g2373 394 FunFam Translation initiation factor eIF-2B subunit alpha 93 195 - -
Sed04g2373 394 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA 92 394 IPR051501 GO:0003743(PANTHER)|GO:0005085(PANTHER)|GO:0005851(PANTHER)|GO:0006413(PANTHER)
Sed04g2373 394 Gene3D - 198 394 IPR042529 -
Sed04g2373 394 MobiDBLite consensus disorder prediction 23 40 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2373 Sed-Chr4:37138985 Sed11g1560 Sed-Chr11:31190041 2.80E-18 dispersed
Sed04g2373 Sed-Chr4:37138985 Sed03g0998 Sed-Chr3:6113805 2.20E-18 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2373 K03239 - csv:101211420 696.427