Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2378 ATGGTGTCTCATTCTCAAGTTCCTGCTAGATATACTTGTAGGCTTCTTGCAATCCCCTGTGTTTCTGAACATAAAAATAGGAGGAAGGATAATCCTCCAAAGGATCAGCAGAGATATCCCTTTCCATTATTGACTTCTTCGGGCCGTTTGGAGGTCCAGGTTTTGCCAAATCCTAGTAAAGATGAGTTTTGTAGGGTTATTGAATTGTATAAACCAAACATTGTTTACTTACAAGGGGAACGACTTGAGAATGATGAAGTTGGTTCTTTAGTATGGGGAGGCGTTGATCTATCCTCCATAGAAGCGATAAGTGGACTCTTTAATTCTACGTTGCCCACAACAGTATATTTGGAAATAGCACATGGAGATGAAATAGCTGATGCACTTCACTCCAAGGGTATTCCTTATGTCATATATTGGAGAAGCACATTTTCATGTTATGCCGCATGTCATTTCCGTAATGCATTCTTTTCTGTTCTTCAGAGTTCTTCTACTCATACATGGGGTGCATTTCAACTTGCATATGCTTCATTTAGGATGTATTGCTCAGGAAACAGCCTTGTTTTTCCTAAGAGTAGTCATGAAGAAATTAGTGACGATGTGGGACCGCATCTTATTGGGGAACATTTGAAAATAAATGTTGAACCCCTTGAGAAAGAGGCAGACGACGAGGATGAAGAAAGTTCATTAGAAATTCCTTCAGTGAGCATACTTGATAATGATGTTGAAATGAGATTTCTCATATGTGGAGAACCGGAATCATCGGACGCCTCCGTATTTGAAGCTCTGGAGGATGGTCTTAGTGCCCTCTTGGACATTGAAATTCGGGGGAGCAAACTTCACAGCAAGTTCAGTGCCCCTCCTCCACCTCTTCAGGCAGGGACAATCTCTAATTGTGTCATGACCATGCGCTGTGATATATCAACATGTAGTTTTGCCCACATCTCACTATTGGTGTCAGGCAGTGCACAAGCCTGTTTTGATGATCAGCTACTTGAAAATTATATAAAGAATGAGATTATAGAAAGAGGCGAAAAGGTGCAGACACTAATAGATGATGAAGGAAACAATCGCCTGTGTGAGCCACGGAAATCTGTTTCAATTGCTTGTGGTGCCGCAGTTTTTGAAGTTAGTATGAAGGTCCCTTCATGGGCGTCTCAGATTTTGAGGCAGTTAGCCCCTGATGTTTCTTATCGAAGTTTAGTGGGACTTGGCATTGCCAGCATTCAGGGTTTGTCTGTTGCTTCTTTCGAAAAGGATGATGCTGAGCGCCTCCTCTTCTTCAGCTCAAAGAAGGAAAAAGATTTATTTCTGAGCAATTTAAGCAGTAGCACACTCCCTAGCTGGTTAAAACCGCCGGCTCCAAGGAAGAGATCAAAAAATATGATAGAAACAAGACATGGCTCTCATGATGTTATTGAACATCTGAAGCTTTCATCGAGAAGTAGAATAGAAGGTGAGAACATGGAAATAGGATCAAGGAATGGTTTTAGCACTCCCATGTTTCCACTCCCAAGAAGGAGAGGAATGAAAATTGCTGCAATGAGGCCCATTCCTCACGCTAATCGACATAAAATGATATCCTTTCGTGGAATAGCTGAGACAAGTGGGCAGAATGGAGGCCTGAATAAAGCTAGTGTTTCGTATAGTAATCCCGCAAAGCATGTTACTGTTGGTTCAACTTCAGTTTCGCAACAAAAAATGTTTCCAAGTATATCTCAATATAAACAAATTATTCCCATGAATCCACTGCCTTTGAAGAAACATGGTTGTGGCAGAGGCCCGATACAGGCTTGCTTTGAGGAGGATTTTTTGAAGGATTTGATGCATTTTCTAGCCCTTCGAGGTCATAATCGACTTATTCCCCCGGGCGGACTTTCTGAGTTTCCAGATGCAATACTCAATGGAAAGCGTCTTGACCTATACAACTTGTATAAGGAGGTGGTTTCAAGAGGCGGTTTTCGTGTAGGAAATGGCATTAACTGGAAAGGACAAATCTTCTCAAAGATGCGAAATTACACCATGACCAATAGAATGACGGGCGTAGGGAACACGCTTAAAAGACATTACGAGACTTATCTTCTCGAGTACGAATTGGCACATGAAGATGTAGATGGTGAATGTTGCTTGTTGTGCCACAGTAGCGCAGCAGGGGACTGGGTGAACTGTGGCATTTGCGGCGAGTGGGCTCACTTCGGTTGTGACAGAAGGCAGGGTCTCGGCGCATTCAAGGACTATGCAAAAACTGATGGATTAGAATACATATGTCCACCCTGTAGTGTTGCTAATTATAAGAAGAAGAAAGTTGCAAATGGGTTGTCTCTAGGCTTATCCTCAAGACCAATGTGA 2349 42.32 MVSHSQVPARYTCRLLAIPCVSEHKNRRKDNPPKDQQRYPFPLLTSSGRLEVQVLPNPSKDEFCRVIELYKPNIVYLQGERLENDEVGSLVWGGVDLSSIEAISGLFNSTLPTTVYLEIAHGDEIADALHSKGIPYVIYWRSTFSCYAACHFRNAFFSVLQSSSTHTWGAFQLAYASFRMYCSGNSLVFPKSSHEEISDDVGPHLIGEHLKINVEPLEKEADDEDEESSLEIPSVSILDNDVEMRFLICGEPESSDASVFEALEDGLSALLDIEIRGSKLHSKFSAPPPPLQAGTISNCVMTMRCDISTCSFAHISLLVSGSAQACFDDQLLENYIKNEIIERGEKVQTLIDDEGNNRLCEPRKSVSIACGAAVFEVSMKVPSWASQILRQLAPDVSYRSLVGLGIASIQGLSVASFEKDDAERLLFFSSKKEKDLFLSNLSSSTLPSWLKPPAPRKRSKNMIETRHGSHDVIEHLKLSSRSRIEGENMEIGSRNGFSTPMFPLPRRRGMKIAAMRPIPHANRHKMISFRGIAETSGQNGGLNKASVSYSNPAKHVTVGSTSVSQQKMFPSISQYKQIIPMNPLPLKKHGCGRGPIQACFEEDFLKDLMHFLALRGHNRLIPPGGLSEFPDAILNGKRLDLYNLYKEVVSRGGFRVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYELAHEDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPPCSVANYKKKKVANGLSLGLSSRPM 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37156792 37165969 + Sed0013718.2 Sed04g2378 710981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2378 782 SMART ARID_2 595 698 - -
Sed04g2378 782 ProSiteProfiles ARID domain profile. 598 702 IPR001606 GO:0003677(InterPro)
Sed04g2378 782 SMART bright_3 599 703 IPR001606 GO:0003677(InterPro)
Sed04g2378 782 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 702 765 IPR013083 -
Sed04g2378 782 CDD ARID 601 698 - -
Sed04g2378 782 CDD PHD_ARID4_like 708 759 - -
Sed04g2378 782 Gene3D - 597 701 IPR036431 GO:0003677(InterPro)
Sed04g2378 782 SUPERFAMILY ARID-like 601 713 IPR036431 GO:0003677(InterPro)
Sed04g2378 782 Pfam ARID/BRIGHT DNA binding domain 602 698 IPR001606 GO:0003677(InterPro)
Sed04g2378 782 SUPERFAMILY FYVE/PHD zinc finger 694 762 IPR011011 -
Sed04g2378 782 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 6 774 IPR042293 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2378 Sed-Chr4:37156792 Sed06g2291 Sed-Chr6:46362607 5.90E-294 dispersed
Sed04g2377 Sed-Chr4:37156792 Sed04g2378 Sed-Chr4:37156792 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38244 PF01388 ARID 4.70E-15 CL0123 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2378 - - - 0.0