Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2378 ATGGTGTCTCATTCTCAAGTTCCTGCTAGATATACTTGTAGGCTTCTTGCAATCCCCTGTGTTTCTGAACATAAAAATAGGAGGAAGGATAATCCTCCAAAGGATCAGCAGAGATATCCCTTTCCATTATTGACTTCTTCGGGCCGTTTGGAGGTCCAGGTTTTGCCAAATCCTAGTAAAGATGAGTTTTGTAGGGTTATTGAATTGTATAAACCAAACATTGTTTACTTACAAGGGGAACGACTTGAGAATGATGAAGTTGGTTCTTTAGTATGGGGAGGCGTTGATCTATCCTCCATAGAAGCGATAAGTGGACTCTTTAATTCTACGTTGCCCACAACAGTATATTTGGAAATAGCACATGGAGATGAAATAGCTGATGCACTTCACTCCAAGGGTATTCCTTATGTCATATATTGGAGAAGCACATTTTCATGTTATGCCGCATGTCATTTCCGTAATGCATTCTTTTCTGTTCTTCAGAGTTCTTCTACTCATACATGGGGTGCATTTCAACTTGCATATGCTTCATTTAGGATGTATTGCTCAGGAAACAGCCTTGTTTTTCCTAAGAGTAGTCATGAAGAAATTAGTGACGATGTGGGACCGCATCTTATTGGGGAACATTTGAAAATAAATGTTGAACCCCTTGAGAAAGAGGCAGACGACGAGGATGAAGAAAGTTCATTAGAAATTCCTTCAGTGAGCATACTTGATAATGATGTTGAAATGAGATTTCTCATATGTGGAGAACCGGAATCATCGGACGCCTCCGTATTTGAAGCTCTGGAGGATGGTCTTAGTGCCCTCTTGGACATTGAAATTCGGGGGAGCAAACTTCACAGCAAGTTCAGTGCCCCTCCTCCACCTCTTCAGGCAGGGACAATCTCTAATTGTGTCATGACCATGCGCTGTGATATATCAACATGTAGTTTTGCCCACATCTCACTATTGGTGTCAGGCAGTGCACAAGCCTGTTTTGATGATCAGCTACTTGAAAATTATATAAAGAATGAGATTATAGAAAGAGGCGAAAAGGTGCAGACACTAATAGATGATGAAGGAAACAATCGCCTGTGTGAGCCACGGAAATCTGTTTCAATTGCTTGTGGTGCCGCAGTTTTTGAAGTTAGTATGAAGGTCCCTTCATGGGCGTCTCAGATTTTGAGGCAGTTAGCCCCTGATGTTTCTTATCGAAGTTTAGTGGGACTTGGCATTGCCAGCATTCAGGGTTTGTCTGTTGCTTCTTTCGAAAAGGATGATGCTGAGCGCCTCCTCTTCTTCAGCTCAAAGAAGGAAAAAGATTTATTTCTGAGCAATTTAAGCAGTAGCACACTCCCTAGCTGGTTAAAACCGCCGGCTCCAAGGAAGAGATCAAAAAATATGATAGAAACAAGACATGGCTCTCATGATGTTATTGAACATCTGAAGCTTTCATCGAGAAGTAGAATAGAAGGTGAGAACATGGAAATAGGATCAAGGAATGGTTTTAGCACTCCCATGTTTCCACTCCCAAGAAGGAGAGGAATGAAAATTGCTGCAATGAGGCCCATTCCTCACGCTAATCGACATAAAATGATATCCTTTCGTGGAATAGCTGAGACAAGTGGGCAGAATGGAGGCCTGAATAAAGCTAGTGTTTCGTATAGTAATCCCGCAAAGCATGTTACTGTTGGTTCAACTTCAGTTTCGCAACAAAAAATGTTTCCAAGTATATCTCAATATAAACAAATTATTCCCATGAATCCACTGCCTTTGAAGAAACATGGTTGTGGCAGAGGCCCGATACAGGCTTGCTTTGAGGAGGATTTTTTGAAGGATTTGATGCATTTTCTAGCCCTTCGAGGTCATAATCGACTTATTCCCCCGGGCGGACTTTCTGAGTTTCCAGATGCAATACTCAATGGAAAGCGTCTTGACCTATACAACTTGTATAAGGAGGTGGTTTCAAGAGGCGGTTTTCGTGTAGGAAATGGCATTAACTGGAAAGGACAAATCTTCTCAAAGATGCGAAATTACACCATGACCAATAGAATGACGGGCGTAGGGAACACGCTTAAAAGACATTACGAGACTTATCTTCTCGAGTACGAATTGGCACATGAAGATGTAGATGGTGAATGTTGCTTGTTGTGCCACAGTAGCGCAGCAGGGGACTGGGTGAACTGTGGCATTTGCGGCGAGTGGGCTCACTTCGGTTGTGACAGAAGGCAGGGTCTCGGCGCATTCAAGGACTATGCAAAAACTGATGGATTAGAATACATATGTCCACCCTGTAGTGTTGCTAATTATAAGAAGAAGAAAGTTGCAAATGGGTTGTCTCTAGGCTTATCCTCAAGACCAATGTGA 2349 42.32 MVSHSQVPARYTCRLLAIPCVSEHKNRRKDNPPKDQQRYPFPLLTSSGRLEVQVLPNPSKDEFCRVIELYKPNIVYLQGERLENDEVGSLVWGGVDLSSIEAISGLFNSTLPTTVYLEIAHGDEIADALHSKGIPYVIYWRSTFSCYAACHFRNAFFSVLQSSSTHTWGAFQLAYASFRMYCSGNSLVFPKSSHEEISDDVGPHLIGEHLKINVEPLEKEADDEDEESSLEIPSVSILDNDVEMRFLICGEPESSDASVFEALEDGLSALLDIEIRGSKLHSKFSAPPPPLQAGTISNCVMTMRCDISTCSFAHISLLVSGSAQACFDDQLLENYIKNEIIERGEKVQTLIDDEGNNRLCEPRKSVSIACGAAVFEVSMKVPSWASQILRQLAPDVSYRSLVGLGIASIQGLSVASFEKDDAERLLFFSSKKEKDLFLSNLSSSTLPSWLKPPAPRKRSKNMIETRHGSHDVIEHLKLSSRSRIEGENMEIGSRNGFSTPMFPLPRRRGMKIAAMRPIPHANRHKMISFRGIAETSGQNGGLNKASVSYSNPAKHVTVGSTSVSQQKMFPSISQYKQIIPMNPLPLKKHGCGRGPIQACFEEDFLKDLMHFLALRGHNRLIPPGGLSEFPDAILNGKRLDLYNLYKEVVSRGGFRVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYELAHEDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPPCSVANYKKKKVANGLSLGLSSRPM 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37156792 37165969 + Sed0013718.2 Sed04g2378 710981

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2378 782 SMART ARID_2 595 698 - -
Sed04g2378 782 ProSiteProfiles ARID domain profile. 598 702 IPR001606 GO:0003677(InterPro)
Sed04g2378 782 SMART bright_3 599 703 IPR001606 GO:0003677(InterPro)
Sed04g2378 782 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 702 765 IPR013083 -
Sed04g2378 782 CDD ARID 601 698 - -
Sed04g2378 782 CDD PHD_ARID4_like 708 759 - -
Sed04g2378 782 Gene3D - 597 701 IPR036431 GO:0003677(InterPro)
Sed04g2378 782 SUPERFAMILY ARID-like 601 713 IPR036431 GO:0003677(InterPro)
Sed04g2378 782 Pfam ARID/BRIGHT DNA binding domain 602 698 IPR001606 GO:0003677(InterPro)
Sed04g2378 782 SUPERFAMILY FYVE/PHD zinc finger 694 762 IPR011011 -
Sed04g2378 782 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 6 774 IPR042293 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2378 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2378 Sed-Chr4:37156792 Sed06g2291 Sed-Chr6:46362607 5.90E-294 dispersed
Sed04g2377 Sed-Chr4:37156792 Sed04g2378 Sed-Chr4:37156792 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g26 . Blo06g00765 . Bda10g00889 . Bpe10g00717 Bma10g00669 . . Cmo17g00636 . . . Car14g01069 . Cpe12g00555 . Bhi01g02835 . . . . . . . . . . . . . . . Cone7ag1258 . Lsi02g02861 Csa07g02313 . Cme01g02766 Blo07g00805 . Bda05g00623 . Bpe03g00693 . . . Sed04g2378 Cmo01g00019 . . Cma17g00656 . Car17g00618 . . Bhi09g00271 Tan06g0071 Cmetu01g1064 . Hepe03g1390 . . Cla09g00122 Cam09g0131 Cec09g0134 Cco09g0135 Clacu09g0138 . Cre09g0123 . Csa03g02792 Chy01g02133 Cme04g01382
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed09g0187 . 1 370 ARID Transcription Factor Family AT1G04880 56.9 2.8e-107 386.7
Sed04g2060 . 14 330 ARID Transcription Factor Family AT1G04880 53.8 3.9e-88 323.2
Sed04g2061 . 14 330 ARID Transcription Factor Family AT1G04880 53.8 3.9e-88 323.2
Sed04g2062 . 14 330 ARID Transcription Factor Family AT1G04880 53.8 3.9e-88 323.2
Sed04g2063 . 14 330 ARID Transcription Factor Family AT1G04880 53.8 3.9e-88 323.2
Sed04g1052 . 200 480 ARID Transcription Factor Family AT1G20910 60.6 4.0e-89 326.2
Sed01g2459 . 16 310 ARID Transcription Factor Family AT1G76110 66.3 3.5e-110 396.0
Sed04g1052 . 200 510 ARID Transcription Factor Family AT1G76510 62.0 4.7e-107 386.0
Sed06g2291 . 2 781 ARID Transcription Factor Family AT3G43240 58.4 4.4e-262 901.7
Sed06g2292 . 2 781 ARID Transcription Factor Family AT3G43240 58.4 4.4e-262 901.7
Sed06g2295 . 2 781 ARID Transcription Factor Family AT3G43240 58.4 4.4e-262 901.7
Sed06g2296 . 2 781 ARID Transcription Factor Family AT3G43240 58.4 4.4e-262 901.7
Sed06g2293 . 2 786 ARID Transcription Factor Family AT3G43240 58.0 3.1e-260 895.6
Sed06g2294 . 2 786 ARID Transcription Factor Family AT3G43240 58.0 3.1e-260 895.6
Sed06g0034 . 2 773 ARID Transcription Factor Family AT3G43240 58.1 1.4e-255 880.2
Sed04g2377 . 4 772 ARID Transcription Factor Family AT3G43240 57.4 1.7e-250 863.2
Sed04g2378 . 4 772 ARID Transcription Factor Family AT3G43240 57.4 1.7e-250 863.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38244 PF01388 ARID 4.70E-15 CL0123 Sed TR