Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2379 ATGGCTGCTCTCCTTCAAACACTCTTCCTTTTCTCTCTCATCCTCCCATTTTCTTCAGCTTTGAAGAGCACTTTCATTGTGCAGGTTCACAATCATGTGCCTAAGCCTTCCATTTTCCCAACCCACAAGCACTGGTATGAGTCCTCTCTACCTTCTTCTTCTTCTTCTTCTTCTTCTTCCAATGGACCCATCATTCATACTTATCACAATGTCTTCTATGGCTTCTCTGCAAAGCTCTCACCTTTTGAAGTTAACAAGCTTCTAAGCCTTCCCCACATCGCCTCCATCCTCCCCGAACAGGTTCGACATCCTCACACCACTCGTTCCCCTGAGTTTCTTGGCCTCAAGACTACAAACACGACTGGATTACTGAAAGAGTCTGACTTTGGATCTGACCTTGTCATTGGAGTCATTGACACTGGTATTTGGCCGGAGCGGCAGAGCTTCAACGATCGAAATCTGGGTCCTGTTCCTTCTAGATGGAAAGGAGCTTGTGTGGCGGCTAAGGACTTTCCAGCCACTTCTTGCAACCGTAAACTCATTGGGGCTCGATTCTTCTACGGTGGCTACCAGGCCACCAATGGCAAATTGAACGACACCACGGAGTACCACTCGCCGCGCGACTCGGATGGCCACGGTACTCACACGGCCTCCATTGCGGCGGGTCGTTATGTGTTTCCAGCTTCCACTTTGGGCTATGCTCGTGGTCGAGCGGCTGGAATGGCTCCCAAGGCTCGCCTTGCTGCCTATAAAGTCTGCTGGAATGCTGGCTGCTATGACTCTGATATTCTTGCTGCTTTTGATGCGGCTGTTTCGGATGGTGTCGATGTTGTGTCGCTCAGCGTCGGCGGTGTCGTTGTGCCTTACTATCTCGATGCCATTGCTATCGCCGCCTTTCGAGCTGTGGCGTCCGGTGTTTTTGTCTCGGCGTCGGCGGGGAATGGGGGCCCTGGGGGGCTTACTGTGACTAATGTAGCACCATGGGTTACCACAGTTGGAGCGGGAACTATGGATAGAGATTTCCCTGCTGATGTTAAGCTGGGAAATGGGAGGGTTATACTTGGTACTAGTGTCTATAGCGGACCGGGTTTGGTTCCGGGTCGATTGTATCCTCTTATTTATGCAGGAACAGAAGAGGGTGGTGGGTATTCTTCGTCTTTGTGCTTAGATGGTTCATTGAATCCCAATTTAGTGAAAGGGAAGATTGTACTGTGTGATAGGGGTATCAATTCAAGAGCTGCTAAAGGAGAGGTTGTGAAGAAGGCTGGAGGATTCGGAATGATTATTGCCAATGGGGTTTTTGATGGTGAGGGCTTAGTAGCTGATTGCCATGTACTACCTGCCACCGCGGTTGGTGCTACCGCCGGTGACGAGATTCGGAAATACATTGCAGAAGCAGCTAAGTCTCATTCACCACCAACAGCAACAATTATGTTCAAGGGAACTCGGCTTGGGGTCAGGCCAGCACCCGTCGTTGTTTCGTTTTCAGCTCGAGGTCCTAATCCAGAGTCCCCTGAGATCATGAAGCCCGATATGATTGCGCCTGGTTTGAACATTCTTGCTGCTTGGCCTGATAAAATTGGGCCTTCTGGAATTCCTACAGACAAGCGTACCATAGAGTTCAACATACTTTCAGGCACTTCCATGGCTTGTCCTCATGTCTCTGGCTTGGCTGCCCTGCTTAAGGCAGCACACCCTGGATGGAGTCCAGCAGCTATAAAATCAGCACTAATGACCACAGCTTACACCTTGGATAACCGGGGTGAGACAATGCTGGATGAATCTTCAGGCAATACTTCCACAGTTATGGACTTTGGAGCTGGTCATGTTCACCCACAAAAGGCAATGGACCCTGGTTTAATCTATGACATTAACACAAATGATTATGTTGATTTCTTGTGTAATTCCAACTACACAACCAAGAGTATCCAAGTCATTACAGGGAAAATTGCAGATTGTAAAGGGGCAAAAAGGGCAGGCCATACTGGAAACTTGAACTACCCTTCATTGTCTGTGGTGTTTCAACAATATGGCAAGCATAAGATGTCTACACATTTCATTAGAACTGTGACCAATGTTGGGAACACCAATTCAATCTATAAGGTAGCAATAAAGCCTCCAAGTGGAGTTTCAGTGACAGTGGAGCCAGAAAGGCTGACATTTACAAGGGTTGGACAAAAATTGAGCTTCTTGGTCAGGGTCCAAGCAATGGCTGTTAGACTTTCCCCTGGAAGCTCTAGCACAAAGAGTGGTTCTATAGTTTGGACTGATGGAAAGCACATAGTCACCAGTCCACTGGTTGTAACCATGCAGCAACCTCTGCTGTAG 2328 48.41 MAALLQTLFLFSLILPFSSALKSTFIVQVHNHVPKPSIFPTHKHWYESSLPSSSSSSSSSNGPIIHTYHNVFYGFSAKLSPFEVNKLLSLPHIASILPEQVRHPHTTRSPEFLGLKTTNTTGLLKESDFGSDLVIGVIDTGIWPERQSFNDRNLGPVPSRWKGACVAAKDFPATSCNRKLIGARFFYGGYQATNGKLNDTTEYHSPRDSDGHGTHTASIAAGRYVFPASTLGYARGRAAGMAPKARLAAYKVCWNAGCYDSDILAAFDAAVSDGVDVVSLSVGGVVVPYYLDAIAIAAFRAVASGVFVSASAGNGGPGGLTVTNVAPWVTTVGAGTMDRDFPADVKLGNGRVILGTSVYSGPGLVPGRLYPLIYAGTEEGGGYSSSLCLDGSLNPNLVKGKIVLCDRGINSRAAKGEVVKKAGGFGMIIANGVFDGEGLVADCHVLPATAVGATAGDEIRKYIAEAAKSHSPPTATIMFKGTRLGVRPAPVVVSFSARGPNPESPEIMKPDMIAPGLNILAAWPDKIGPSGIPTDKRTIEFNILSGTSMACPHVSGLAALLKAAHPGWSPAAIKSALMTTAYTLDNRGETMLDESSGNTSTVMDFGAGHVHPQKAMDPGLIYDINTNDYVDFLCNSNYTTKSIQVITGKIADCKGAKRAGHTGNLNYPSLSVVFQQYGKHKMSTHFIRTVTNVGNTNSIYKVAIKPPSGVSVTVEPERLTFTRVGQKLSFLVRVQAMAVRLSPGSSSTKSGSIVWTDGKHIVTSPLVVTMQQPLL 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37174613 37177604 + Sed0021135.1 Sed04g2379 710982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2379 775 SUPERFAMILY Subtilisin-like 106 620 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed04g2379 775 Gene3D - 338 485 - -
Sed04g2379 775 Pfam Peptidase inhibitor I9 24 105 IPR010259 -
Sed04g2379 775 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 17 105 IPR037045 -
Sed04g2379 775 Gene3D - 633 771 - -
Sed04g2379 775 ProSitePatterns Serine proteases, subtilase family, serine active site. 546 556 IPR023828 -
Sed04g2379 775 Gene3D Peptidase S8/S53 domain 132 629 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed04g2379 775 FunFam Subtilisin-like protease SBT1.9 15 105 - -
Sed04g2379 775 ProSiteProfiles Serine proteases, subtilase domain profile. 109 616 - -
Sed04g2379 775 Pfam Subtilase family 130 597 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Sed04g2379 775 FunFam subtilisin-like protease SBT1.5 338 484 - -
Sed04g2379 775 FunFam Subtilisin-like protease SBT1.5 633 771 - -
Sed04g2379 775 CDD PA_subtilisin_like 344 477 - -
Sed04g2379 775 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 54 766 IPR045051 -
Sed04g2379 775 FunFam Subtilisin-like protease SBT1.5 132 351 - -
Sed04g2379 775 PRINTS Subtilisin serine protease family (S8) signature 208 221 IPR015500 -
Sed04g2379 775 PRINTS Subtilisin serine protease family (S8) signature 130 149 IPR015500 -
Sed04g2379 775 PRINTS Subtilisin serine protease family (S8) signature 545 561 IPR015500 -
Sed04g2379 775 Pfam Fibronectin type-III domain 664 768 IPR041469 -
Sed04g2379 775 SUPERFAMILY PA domain 398 462 IPR046450 -
Sed04g2379 775 CDD Peptidases_S8_3 103 582 IPR034197 -
Sed04g2379 775 Pfam PA domain 371 459 IPR003137 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0207 Sed-Chr1:1663281 Sed04g2379 Sed-Chr4:37174613 1.70E-237 dispersed
Sed04g2379 Sed-Chr4:37174613 Sed08g0922 Sed-Chr8:7816080 1.10E-204 dispersed
Sed04g2379 Sed-Chr4:37174613 Sed09g0258 Sed-Chr9:2064825 9.20E-138 wgd
Sed04g2379 Sed-Chr4:37174613 Sed09g1717 Sed-Chr9:40408908 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2379 - - - 0.0