Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2397 ATGTGTGTGTGTATGCTTGTATGCAGCTTTAAGTGGATAACAATGGAGGCCTCATTTGATCACCTTAAGAATCAGGACGATTTATCTGGGGTTTGTGAGGATGATATATTAGCTGACCCTTATGTGCGTTCTCTTAAGTGGAGTGATGTTAGTTTGAGGCAATGGTTGGATAAGCCAGAAAGATCTGTGGATGCTCTTGAGTGCCTTCATATATTTAGGCAAATAGTTGAGATTGTTAACATTGCTCATGCCCAAGGCATTGTTGTTCACAATGTTCGTCCTTCATGCTTTGTTATGTCCTCTTTTAACCATGTAACGTTTATTGAGTCGGCATCATGTTCGGATTCGGGCTCTGATTCTCTTGAGGATGGTTTGAATAGTCAAGCTGCAGAAGTTAAAAAATCACCTTCTCCCTTTCCAAGCAGCCTTGGAAGTGAGGGTTTTCGATCTGTTATGACCCCCATAAATGCTTTGTCCGAAACTAGTTGCATGCAGTCGAGTTTAATATATGCAGCCCAGTTATCATTAAATGAAGGGTCTGAAGAATGTAGAAAGAAGGATAGAAGAAACATTGAAGAAGCTGAAGATAAGATGCAATCATTTCCAATGAAACAGATATTGGCCATGGAGACTACTTGGTACACTAGCCCAGAAGAGGCTTCTGGTGGCCCAAGTTCCAGTGCTTCGGACATCTACCGTTTTGGAGTTCTTCTTTTTGAGTTATTCTGCTCCTTCAGCTCGAGAGAAGAGAAGAGTAGAATTATGTCCAGCTTGCGGCATAGAGTGCTTCCTCCTCAATTGCTGTTGAAGTGGCCAAAAGAAGCTTCATTTTGCTTATGGTTACTCCATCCCGAGCCAAGTAATCGACCTAAGATAAGTGAGTTATTGCAGAGTGAATTTCTCAATGAACCAAGAGATGACCTCGAAGAACGTGAAGCAGCAATCGAGCTTAGGAAAAGAATTGAAGAGCAGGAGTTACTGCTAGAATTCCTTTTGCTTATGCAACAAAGGAAGCAGGAAGCTGCTCATAAGTTGCAAGATACCATTTCATTTCTGTGCAGTGATATTGAACAAGTTACAAGGCACCAAAATAATTTCAAGAAAAAGAGTAGGTCATGCCCGGATCTAGAGAAGAAAGATCATATGTCATTAAATCTCCCTTCAACAACTCCCGTTGAAAATACTGATTCTGCTGGCTTGGGAACAAGGAAACGATTTAGGCCAGGAAATTTGAACAACAATTTAGAAGCATGTGGTGATAATCTTGATGATTGTGAGGAACCAAGTTCAGCCAATGAAAATGAACAAGGTGTACTTTTTAAGAGTTCTCGGTTAATGAAGAACTTCAAAAAATTGGAGTTAGCCTATCTTTTGATGAGAGGTAGAGTAAACAAGCCATCAGGGAGGCAGTTTGTTAAACACTCATCAATAAGTAGCGATGGTAGAGGATCGGTAGTTTTGACCGAAAGAAGTTCTGCTAACAATTTGCCTTCAAAAGAGAGTTGCAATGAAAATAGACAAGGTGGGTGGATAAGTCCGTTCCTTGAAGGTTTGTGCAAGTATCTATCCTTTAGCAAACTAAAAGTCAAGGCAGACTTGAAGCAAGGAGATCTATTGAATTCCTCCAACCTAGTATGTTCTCTCAGTTTTGACCGTGATGGAGAATTTTTTGCCACGGCTGGTGTTAATAGGAAAATTAAAGTGTTTGGATATGACTCGATCGTGAACGAAGACCGTGATATTCATTACCCTGTTGTTGAAATGGCTAGCAGGTCGAAACTAAGCAGTGTTTGTTGGAACCGTTACATCAAAAGTCAAATTGCTTCAAGTAATTTTGAGGGTGTAGTGCAGGTGTGGGATGTTACAAGAAGTCAAGTGGTCACTGAAATGGGAGAGCATGCAAGGCGCGTATGGTCCATTGACTTCTCATCAGCGGATCCAACAATTTTGGCAAGCGGGAGTGATGATGGATCAGTTAAGCTCTGGAGTATCAATCAGGGTATAAGTATTGGCACAATCAGAACGAAAGCCAATGTCTGCTGTGTACAATTTCCTGTGGATTCTGGTCGTTCCCTTGCATTTGGTTCAGCTGATCACAAAATTTATTACTATGACATGCGAAATATAAGAGTTCCTCTGTGCACCTTCACCGGGCATAACAAAACTAACTTTGTGGGACTATCAGTGTCTGATGGTTACATTGCTACAGGTTCAGAGACAAATGAGGTATTTATCTACCACAAAGCCTTTCCAATGCCAGCATTGTCATACAAGTTTCAAATGGATCCTCTTTCCAGCCATGAAATGGACGATGCCGCACAATTTATCTCTTCAGTTTGCTGGCGAAGCCAGTCGTCTTCATTAGTAGCTGCAAACTCAACTGGGCACATCAAAATTTTGGAAATGGTTTAG 2412 41.13 MCVCMLVCSFKWITMEASFDHLKNQDDLSGVCEDDILADPYVRSLKWSDVSLRQWLDKPERSVDALECLHIFRQIVEIVNIAHAQGIVVHNVRPSCFVMSSFNHVTFIESASCSDSGSDSLEDGLNSQAAEVKKSPSPFPSSLGSEGFRSVMTPINALSETSCMQSSLIYAAQLSLNEGSEECRKKDRRNIEEAEDKMQSFPMKQILAMETTWYTSPEEASGGPSSSASDIYRFGVLLFELFCSFSSREEKSRIMSSLRHRVLPPQLLLKWPKEASFCLWLLHPEPSNRPKISELLQSEFLNEPRDDLEEREAAIELRKRIEEQELLLEFLLLMQQRKQEAAHKLQDTISFLCSDIEQVTRHQNNFKKKSRSCPDLEKKDHMSLNLPSTTPVENTDSAGLGTRKRFRPGNLNNNLEACGDNLDDCEEPSSANENEQGVLFKSSRLMKNFKKLELAYLLMRGRVNKPSGRQFVKHSSISSDGRGSVVLTERSSANNLPSKESCNENRQGGWISPFLEGLCKYLSFSKLKVKADLKQGDLLNSSNLVCSLSFDRDGEFFATAGVNRKIKVFGYDSIVNEDRDIHYPVVEMASRSKLSSVCWNRYIKSQIASSNFEGVVQVWDVTRSQVVTEMGEHARRVWSIDFSSADPTILASGSDDGSVKLWSINQGISIGTIRTKANVCCVQFPVDSGRSLAFGSADHKIYYYDMRNIRVPLCTFTGHNKTNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSYKFQMDPLSSHEMDDAAQFISSVCWRSQSSSLVAANSTGHIKILEMV 803
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37272132 37279169 + Sed0021610.3 Sed04g2397 711000

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2397 803 SUPERFAMILY WD40 repeat-like 539 800 IPR036322 GO:0005515(InterPro)
Sed04g2397 803 Gene3D - 722 803 IPR015943 GO:0005515(InterPro)
Sed04g2397 803 Gene3D - 516 721 IPR015943 GO:0005515(InterPro)
Sed04g2397 803 ProSiteProfiles Protein kinase domain profile. 1 301 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g2397 803 MobiDBLite consensus disorder prediction 367 382 - -
Sed04g2397 803 SUPERFAMILY Protein kinase-like (PK-like) 49 313 IPR011009 -
Sed04g2397 803 SMART WD40_4 666 705 IPR001680 GO:0005515(InterPro)
Sed04g2397 803 SMART WD40_4 709 747 IPR001680 GO:0005515(InterPro)
Sed04g2397 803 SMART WD40_4 762 801 IPR001680 GO:0005515(InterPro)
Sed04g2397 803 SMART WD40_4 535 570 IPR001680 GO:0005515(InterPro)
Sed04g2397 803 SMART WD40_4 623 663 IPR001680 GO:0005515(InterPro)
Sed04g2397 803 SMART WD40_4 581 620 IPR001680 GO:0005515(InterPro)
Sed04g2397 803 Coils Coil 305 325 - -
Sed04g2397 803 PANTHER PROTEIN SPA1-RELATED 2 43 722 IPR044630 GO:0009640(InterPro)
Sed04g2397 803 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 630 667 - -
Sed04g2397 803 Coils Coil 177 197 - -
Sed04g2397 803 MobiDBLite consensus disorder prediction 383 397 - -
Sed04g2397 803 Pfam WD domain, G-beta repeat 542 569 IPR001680 GO:0005515(InterPro)
Sed04g2397 803 Pfam WD domain, G-beta repeat 627 663 IPR001680 GO:0005515(InterPro)
Sed04g2397 803 MobiDBLite consensus disorder prediction 367 411 - -
Sed04g2397 803 Gene3D Transferase(Phosphotransferase) domain 1 48 311 - -
Sed04g2397 803 ProSiteProfiles Trp-Asp (WD) repeats profile. 630 672 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2397 K26557 - - csv:101205812 1394.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2395 Sed-Chr4:37272132 Sed04g2397 Sed-Chr4:37272132 0.00E+00 dispersed
Sed04g2397 Sed-Chr4:37272132 Sed05g0726 Sed-Chr5:5465339 2.60E-135 dispersed
Sed04g2396 Sed-Chr4:37272132 Sed04g2397 Sed-Chr4:37272132 9.7e-313 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g219 . . . . . . . . . . Cma01g01208 . Car01g01033 Car09g00778 Sed04g2397 . . Bhi09g03427 Tan01g4395 Cmetu07g0812 . Hepe01g1386 . . . . . . . . . . . Cone14ag1062 Cone15ag1054 . . . . . . . . . . . . . Cmo01g01262 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003437 3 3 1 2 3 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 3 2 4 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79037 PF00400 WD40 0.00019 CL0186 Sed PK