Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2403 ATGGCAACGGCGTCGGAAGTGGCCGTGAACGGAGACAAGAGGGCTAAAATCATGCCCGATTACTTGGAGACCAAAGCGGTCTCTGAAACCAAGGCTCTTCTTTCAGAGCTCTGCCGCCATTTTTATGGCCTTGGTTGGGTTTCTGGAACTGGCGGCAGTATCACCATCAAGGCCCATGATGATGCGATTCCCAAGCAGGATCAGCTCGTTGTTATGTCCCCTTCTGGCGTCCAGAAGGAGCGAATGGTACCGGAGGACATGTACGTGCTATCTCCTGGTGGTTCTATCTTATCTTCTCCTACTGCAAAGCCATATCCACACAAGCCTCCAAAATGTTCGGATTGCGGTCCCCTTTTTATGAAGGCATATCAGATGCGAGATGCTGGAGCTGTTATTCACAGTCACGGGATAGAATCATGCCTTGCAACAATGATCAATCCATCGGCAAAGGAATTTAGAATTACTCACATGGAAATGATCAAAGGAATCAAAGGGCATGGTTACTATGATGAACTTGTGATCCCAATAATAGAAAATACAGCTTATGAGTATGAACTCACAGAATCTCTAGCTAAAGCGATAGAAGCCTACCCTAAAACAACTGCTGTGCTTGTTCGAAACCATGGCATTTATGTATGGGGAGATTCATGGATTCATGCAAAAACTCAGGCTGAATGTTACCACTATCTCTTTGATGCGGCCATCAAGCTTTATCAATTGGGCTTAGACTGGTCTACCCCAAATCATGGTCCCATTCAGAATGTCAATGGAGTTGTAGTAGGTGGTTGCGACCATGGAGCATCTTCAAAGCGTTGCATTGTCCTTGATATAGAAGGAACTACTACTCCAATATCATTTGTGACTGATGTTCTCTTTCCATATGCTCGTGACAATGTCCGTAAGCATTTGTCTCTAACATTCGACACTGCAGAAACTAAAGAAGATATTAAGTTGTTGCGATCTCAGGTGCAAGATGATCTGGAGAAAGGTGTTGCTGGTGCCGTGCCTATTCCTCTTGATGATTCTGCAAAAGAAGAGGTTATTGCAGCTTTAGTAGTGAATGTTGAAGCCATGATAAAAGCTGACAGGAAGATTCCTGCCCTGAAGCAGTTGCAAGGTCATATATGGCTAACTGGATTTGAGAACAATGAATTGAAAGGAGAAGTTTTTGAGGATGTACCGAGAGCTCTGGAAAGGTGGCACGCATCAGGCATAAAGTCTCCTGCTTTTTGTTGCCTAATGATAAATAAATCTTCATCCCTGAATACTGCTGCGAGTGAAAATAGTTTCCGAAGGTCTCCAAGGGGTGGCGCAGTGGTTGAAGACTTAGATTTTGAGGGTATGTTTCCCTCTCCCTCAAGGTCCTAA 1368 44.52 MATASEVAVNGDKRAKIMPDYLETKAVSETKALLSELCRHFYGLGWVSGTGGSITIKAHDDAIPKQDQLVVMSPSGVQKERMVPEDMYVLSPGGSILSSPTAKPYPHKPPKCSDCGPLFMKAYQMRDAGAVIHSHGIESCLATMINPSAKEFRITHMEMIKGIKGHGYYDELVIPIIENTAYEYELTESLAKAIEAYPKTTAVLVRNHGIYVWGDSWIHAKTQAECYHYLFDAAIKLYQLGLDWSTPNHGPIQNVNGVVVGGCDHGASSKRCIVLDIEGTTTPISFVTDVLFPYARDNVRKHLSLTFDTAETKEDIKLLRSQVQDDLEKGVAGAVPIPLDDSAKEEVIAALVVNVEAMIKADRKIPALKQLQGHIWLTGFENNELKGEVFEDVPRALERWHASGIKSPAFCCLMINKSSSLNTAASENSFRRSPRGGAVVEDLDFEGMFPSPSRS 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37324462 37332418 - Sed0013988.2 Sed04g2403 711006

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2403 455 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 284 380 - -
Sed04g2403 455 Pfam Class II Aldolase and Adducin N-terminal domain 34 233 IPR001303 -
Sed04g2403 455 NCBIfam methylthioribulose 1-phosphate dehydratase 34 239 IPR017714 GO:0005737(InterPro)|GO:0019509(InterPro)|GO:0046872(InterPro)
Sed04g2403 455 PANTHER METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE 12 253 - GO:0005737(PANTHER)|GO:0019509(PANTHER)|GO:0046570(PANTHER)
Sed04g2403 455 Hamap Methylthioribulose-1-phosphate dehydratase [APIP]. 19 243 IPR027514 GO:0005737(InterPro)|GO:0019509(InterPro)|GO:0046872(InterPro)
Sed04g2403 455 SUPERFAMILY HAD-like 270 406 IPR036412 -
Sed04g2403 455 Gene3D - 284 383 - -
Sed04g2403 455 SMART Aldolase_II_2 32 235 IPR001303 -
Sed04g2403 455 Gene3D - 27 254 IPR036409 -
Sed04g2403 455 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 27 252 - -
Sed04g2403 455 SUPERFAMILY AraD/HMP-PK domain-like 29 248 IPR036409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2403 K16054 - - csv:101205098 771.541
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2403 Sed-Chr4:37324462 Sed13g0564 Sed-Chr13:3926221 3.40E-60 dispersed
Sed04g2402 Sed-Chr4:37324462 Sed04g2403 Sed-Chr4:37324462 4.70E-239 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g201 . . . . Bpe09g00237 . . Bma13g00947 Cmo16g00433 . Cma01g01212 . Car01g01036 . Sed04g2403 . Cpe02g00698 Bhi09g03436 Tan01g0815 . . Hepe01g1391 . . Cla11g01757 Cam11g1824 Cec11g1844 Cco11g1851 Clacu11g1984 Cmu11g1794 Cre11g2201 Cone6ag0152 Cone9ag0177 . Cone15ag1052 Lsi04g02067 Csa04g02338 Chy07g00069 . . Blo10g00760 . Bda12g00837 . . . . . Cmo01g01266 . . Cma16g00399 . Car16g00364 Cpe14g00336 . . . . . . . . . . . . . . . . . Chy06g01160 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002536 1 3 1 2 1 1 2 1 1 2 2 2 2 2 2 2 1 3 1 2 2 2 2 2 2 2 2 4 3 2 57