Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2406 ATGGAGACAAAGAGCTTTGAAGGCAAGCATAATTACAAAGATAAAGCGTATAGAGATGTTATCGATGACGATTTAGATTACGAAACGGAGGAGGAAGAGGTTGGCGGAGGTCACCCTGGAGGTAGCAACGGTAACACTGCATTGGATTGTCCTGAGAATGAGAAAAAGAAAAGAGGAACAGCAGTTCCTGGCCGTGGACGCTCCGGTGGTGCCACCTCCTCGCCGACATGCCAAGCGTATAACTGTTCGACCGATTTGAGTGAAGCTAAGAGGTATCACCGCCGCCACAAGGTCTGCGAGTTTCACTCGAAAGCAGCCTTCGTTATGGTGGCTGGAATTCGCCAGCGCTTCTGCCAGCAATGCAGCAGGTTCCATGAGTTATCAGAATTTGATGAAGCTAAACGTAGCTGTCGCCGAAGGCTAGCGGGGCACAATGAACGACGGCGGAAGAGCTCGGTTGAGTGCCAAGGGGAAAGCACGAGCCGCAAAGGATCAACCCCACAGTCAAAGGAAAGCCAATGCAGGCAGCTGGTGGAAGATCAAAGAAGCAGAAATCAGATGGCTCCGTCAGGAAGTTCTGGCTATAAACACCTGCATATCAGATAA 606 50.5 METKSFEGKHNYKDKAYRDVIDDDLDYETEEEEVGGGHPGGSNGNTALDCPENEKKKRGTAVPGRGRSGGATSSPTCQAYNCSTDLSEAKRYHRRHKVCEFHSKAAFVMVAGIRQRFCQQCSRFHELSEFDEAKRSCRRRLAGHNERRRKSSVECQGESTSRKGSTPQSKESQCRQLVEDQRSRNQMAPSGSSGYKHLHIR 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37376591 37377573 + Sed0023249.1 Sed04g2406 711009

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2406 201 MobiDBLite consensus disorder prediction 23 74 - -
Sed04g2406 201 MobiDBLite consensus disorder prediction 148 201 - -
Sed04g2406 201 Pfam SBP domain 77 150 IPR004333 GO:0003677(InterPro)
Sed04g2406 201 ProSiteProfiles Zinc finger SBP-type profile. 74 151 IPR004333 GO:0003677(InterPro)
Sed04g2406 201 MobiDBLite consensus disorder prediction 157 192 - -
Sed04g2406 201 Gene3D - 67 138 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed04g2406 201 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 36 184 IPR044817 GO:0003677(InterPro)
Sed04g2406 201 SUPERFAMILY SBT domain 75 155 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed04g2406 201 FunFam Squamosa promoter-binding-like protein 14 68 138 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2406 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2120 Sed-Chr1:15901048 Sed04g2406 Sed-Chr4:37376591 2.50E-31 dispersed
Sed04g2406 Sed-Chr4:37376591 Sed10g0295 Sed-Chr10:1754932 8.40E-35 dispersed
Sed04g2406 Sed-Chr4:37376591 Sed04g3372 Sed-Chr4:43740166 9.90E-36 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g192 . . . Bda09g00515 . . . . . . . Cma09g00854 . Car09g00768 Sed04g2406 Cpe06g00681 . Bhi09g03443 Tan01g4381 Cmetu07g2111 . Hepe01g1395 Mch11g1055 . Cla11g01751 Cam11g1819 Cec11g1839 Cco11g1845 Clacu11g1979 Cmu11g1789 Cre11g2196 Cone6ag0159 Cone9ag0183 . . Lsi04g02062 Csa04g02332 Chy07g00064 Cme07g00585 . . . . . . . . . . Cmo09g00847 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002919 1 2 1 1 2 1 2 2 1 1 2 2 2 1 1 2 1 3 2 2 1 2 2 2 2 2 2 2 2 2 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38246 PF03110 SBP 2.50E-31 No_clan Sed TF