Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2407 ATGACTGGGAAAGAGATTCTACAGAAGATGAAGGAAAAAGTTGGGCTGGGTTCGTCGGATCCAGACTCTGGAAAAGGAAAGAGCAAGATGTCCAAGCATGTCACACATGGTTTCCACTTGGTGGAAGGGAAATCAAATCATGCCATGGAAGATTATGTGGTTGCAGATTTTAAGCAAGTTGATCATCATGAGCTTGGTTTATTTGCAATCTTTGATGGTCATTTGAGCAATGCCATCCCTGATTATTTACAGTCGCATTTATTTGCCAATATAATAAATGAGCCCGATTTCTGGACTGATCCAAAAAACGCCATCAGGAAAGCATACAGGGATACTGACGCTTACATTTTAGAGAAGGCTGTTGATTTCAGTCATGGTGGTTCAACTGCTGTTACAGCCATATTGATTGACTGTACGAAACTAGTAGTTGGCAATGTTGGGGATTCCCGTGCAGTTATTTGCAGGGACGGCAAGGCCAGTCAATTATCAGTCGATCATGAGCCGAGCATGGAAAGAAAAAACATTGAGGAAAGAGGTGGTTTTGTAACAAGCTTTCCTGGAGATGTACCACGCGTTGATGGGCAGTTGGCGGTCGCAAGGGCATTTGGTGATAGGAGCTTAAAGATGCACTTGAGCTCGGAGCCTGATGTGGTAGAGGAGACAATAGATGACAAGACAGAGTTTGTTATCTTGGCAAGCGATGGACTGTGGAAGGTGATGTCGAACGAGGAAGCTGTAGAGTCTATTAGGCATATAAAAGATGTTCACGCAGCTGCGAAGCACTTGACTGAGGAGGCCCTCAAGAGGAAGAGCAAAGATGATATTTCTTGTATAGTTGTGAGATTTCAGTGA 852 43.9 MTGKEILQKMKEKVGLGSSDPDSGKGKSKMSKHVTHGFHLVEGKSNHAMEDYVVADFKQVDHHELGLFAIFDGHLSNAIPDYLQSHLFANIINEPDFWTDPKNAIRKAYRDTDAYILEKAVDFSHGGSTAVTAILIDCTKLVVGNVGDSRAVICRDGKASQLSVDHEPSMERKNIEERGGFVTSFPGDVPRVDGQLAVARAFGDRSLKMHLSSEPDVVEETIDDKTEFVILASDGLWKVMSNEEAVESIRHIKDVHAAAKHLTEEALKRKSKDDISCIVVRFQ 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37377669 37382044 - Sed0003327.1 Sed04g2407 711010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2407 283 SUPERFAMILY PP2C-like 31 282 IPR036457 -
Sed04g2407 283 ProSiteProfiles PPM-type phosphatase domain profile. 35 282 IPR001932 -
Sed04g2407 283 Pfam Protein phosphatase 2C 48 275 IPR001932 -
Sed04g2407 283 PANTHER PROTEIN PHOSPHATASE 31 280 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed04g2407 283 FunFam Probable protein phosphatase 2C 39 25 283 - -
Sed04g2407 283 SMART PP2C_4 31 280 IPR001932 -
Sed04g2407 283 MobiDBLite consensus disorder prediction 1 18 - -
Sed04g2407 283 CDD PP2Cc 43 282 IPR001932 -
Sed04g2407 283 MobiDBLite consensus disorder prediction 1 30 - -
Sed04g2407 283 ProSitePatterns Glycosyl hydrolases family 5 signature. 87 96 IPR018087 GO:0004553(InterPro)|GO:0005975(InterPro)
Sed04g2407 283 Gene3D - 17 283 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2407 Sed-Chr4:37377669 Sed05g2559 Sed-Chr5:37472780 3.70E-121 dispersed
Sed05g1939 Sed-Chr5:32760378 Sed04g2407 Sed-Chr4:37377669 1.30E-104 transposed
Sed14g1623 Sed-Chr14:24410889 Sed04g2407 Sed-Chr4:37377669 4.10E-79 transposed
Sed04g2407 Sed-Chr4:37377669 Sed05g2558 Sed-Chr5:37472780 2.60E-143 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2407 K17506 - csv:101215129 505.368