Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2410 ATGTCTGACGTGGCGAGTATAGCAGAGGCAGTGGCAGCAAGGTTTAGTTCTTTGGAGCTTATTGGAAGAGGATCTTTTGGTGATGTCTACAAGGGGTTTGACAAGGAGCTTAACAAAGAAGTTGCTATTAAAGTTATTGATTTGGAAGAATCTGAGGATGAAATTGAGGATATTCAGACGGAAATTTCTGTTCTGTCACAATGTCGATCACCCTACATTACCGAGTACTATGGTTCTTATCTCCACCAGACGAAGTTATGGATAATAATGGAATATATGGCTGGGGGATCTGTTGCAGATTTGCTGCAGTCTGGGCCTCCGCTTGATGAAATGTCAATTGCATGTATTCTACGGGATTTGCTGTATGCAATTGATTATCTGCACTGTGAAGGAAAAATTCACAGGGACATTAAAGCGGCAAACATTTTACTAAGTGAAAATGGTGATGTTAAGGTTGCAGATTTTGGTGTTTCTGCTCAATTAACAAGGACAATATCGAGGAGAAAGACATTTGTAGGAACTCCATTCTGGATGGCGCCAGAGGTAATCCAGAATTCTGAAGGATACAATGAAAAGGCAGACATTTGGTCTCTAGGAATCACTGCTATTGAAATGGCAAAAGGGGAGCCTCCACTTGCTGATCTCCATCCCATGAGAGTTCTTTTTATCATACCTCGAGAAAATCCACCTCAGTTAGATGAACATTTTTCTCGCCCTATGAAAGAATTGGTGTCTCTGTGCCTGAAGAAAATACCTGCTGAGAGGCCTAGTGCCAAAGAGCTTCTGAAACATCGATTCATTAGAAGTGCCAGGAAGAGTCCTAGGCTTCTGGAGAGAATAAGAGAACGTCCAAAGTACGAAATAAAGGAAGATGTAGAAACACCAACTAATGGTCCTAGAGCTATAGGTGAAACATCAGACACGGTGAAAGTATCAAGAAATTTAAGAGAAGAAACTGTTCGTGCCAGCAACCAGAATAAAACTCCAAAGAACGCGGGATGGGACTTTAGCATTGGGGGGCCACACAGTACAGGTACTGTTCGAAGTGTAGTAAAACCACCTCAAATTAGGGAAAGAAAACCAGAAATTCCTTATGGTCAGGTTGCGCCTAGTAGAGTTGCAGAGAGTGGTAGCTGGCAAGCTGCATCTGGAAATGCACCACGTGACACAGAAGAAAGTGCTAAAGATTCATTCAATATGGGGGATGCAAGTGAAGATGAAGAGTTATCTGTAAGTGGTTCGGGAACCGTTGTGATTCGATCTCCCAGGGGATCTCAAGCATCTGTTCAATTTCATCATGAAAGCAGTCTGGCTGGAAATGCCCAATCATATTTTGAGGACACGTCTCTTAGTGGTACTGTTGTTATGCGTGGTCAACGTGATGATTCTGATTCTTCTCAGACTCCTAAATCCAGATTGGGAATTCAAGAAAAGACTTCAAGTGTGTCTCCTGAAGATAGTGCATTTAACCTTGCGGAGGCCAAGGCTGCAATGCAAGCAGGATTGAAGAAAGCTAAAGTAAGGGAAAGACCTGCTCTCCATAAATTCAACGATAGGAAGGAAAATAGAACAGAGCAAATAGTGAGTAGCTCTGACTCTTCAAGGCATTCTCGTGAATTCTTCGATGAACAAAGAGCATTGCCAAAACCATCTCTATCGATTGATGATGAAGAATGTGCAAAAATAGCATTATCTTCTGCACCTTTATCGATTTTGTTTATGTCATCCTTGAAAGAGGTAATTGCGGATGAATCTGAAGGATCCCCTTCTCGTAATGTAATTAATGCACTTATAAATATGGAACACCTAAAACCCGGATCATGTGAGGTTCTCGTTACCAAGCTGCTACAGAAATTGGCCAGTTCCAAGGAATCTTCACTCAAAGATTTACAAAACTTGGCAACTTCCATATTCACCAAAGAAAAGACAGTTCCTGAAGATACACAAAATGTCGCAGATTCTGATAGCAGCAAAAGGCTACCAAACAGGGAACTTCATTCAAATTCTAACTTGAGCTCGCTTGCTAGATTTTTACTCTCCAGATGGCAAGGTCAGGTGTCACGGGATCTGAGTCCAGCATAA 2082 41.83 MSDVASIAEAVAARFSSLELIGRGSFGDVYKGFDKELNKEVAIKVIDLEESEDEIEDIQTEISVLSQCRSPYITEYYGSYLHQTKLWIIMEYMAGGSVADLLQSGPPLDEMSIACILRDLLYAIDYLHCEGKIHRDIKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKELVSLCLKKIPAERPSAKELLKHRFIRSARKSPRLLERIRERPKYEIKEDVETPTNGPRAIGETSDTVKVSRNLREETVRASNQNKTPKNAGWDFSIGGPHSTGTVRSVVKPPQIRERKPEIPYGQVAPSRVAESGSWQAASGNAPRDTEESAKDSFNMGDASEDEELSVSGSGTVVIRSPRGSQASVQFHHESSLAGNAQSYFEDTSLSGTVVMRGQRDDSDSSQTPKSRLGIQEKTSSVSPEDSAFNLAEAKAAMQAGLKKAKVRERPALHKFNDRKENRTEQIVSSSDSSRHSREFFDEQRALPKPSLSIDDEECAKIALSSAPLSILFMSSLKEVIADESEGSPSRNVINALINMEHLKPGSCEVLVTKLLQKLASSKESSLKDLQNLATSIFTKEKTVPEDTQNVADSDSSKRLPNRELHSNSNLSSLARFLLSRWQGQVSRDLSPA 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37424817 37445995 + Sed0018585.1 Sed04g2410 711013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2410 693 Gene3D Transferase(Phosphotransferase) domain 1 12 300 - -
Sed04g2410 693 MobiDBLite consensus disorder prediction 644 665 - -
Sed04g2410 693 Coils Coil 48 68 - -
Sed04g2410 693 MobiDBLite consensus disorder prediction 318 332 - -
Sed04g2410 693 SUPERFAMILY Protein kinase-like (PK-like) 13 325 IPR011009 -
Sed04g2410 693 MobiDBLite consensus disorder prediction 373 387 - -
Sed04g2410 693 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g2410 693 FunFam serine/threonine-protein kinase dst1 isoform X1 12 300 - -
Sed04g2410 693 CDD STKc_MST3_like 14 286 - -
Sed04g2410 693 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524(InterPro)
Sed04g2410 693 MobiDBLite consensus disorder prediction 458 486 - -
Sed04g2410 693 MobiDBLite consensus disorder prediction 288 419 - -
Sed04g2410 693 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 13 650 IPR050629 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)
Sed04g2410 693 SMART serkin_6 15 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g2410 693 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g2410 693 MobiDBLite consensus disorder prediction 502 541 - -
Sed04g2410 693 MobiDBLite consensus disorder prediction 502 526 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2410 Sed-Chr4:37424817 Sed06g0543 Sed-Chr6:4774716 5.30E-52 dispersed
Sed07g2041 Sed-Chr7:35534200 Sed04g2410 Sed-Chr4:37424817 7.90E-71 transposed
Sed04g2410 Sed-Chr4:37424817 Sed05g2557 Sed-Chr5:37455558 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79038 PF00069 Pkinase 1.10E-67 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2410 K08838 - csv:101214412 1208.36