Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2434 ATGTCATGTTTCGAAGGAGAAATTTCTCTTCCTATGCTGATCGTTTCAACGCTCCGTTGGAGTCAAACGAGTTGCTGCAAATCCATTTCCTCTTCTTTATTTTCTCACAATCCCAAACATTTCACTCCGATTTTCTTTCATCGCCCACCAATGCCACCGGCTTCTGTAAAAATCGTTGCCGAGTACGCCAAGTCGAATCGCTCTACGTGCAAGAACTGCTCCAAAGCCATTCCTGCAAAGGGTTTGAGGTTGGGTTTTGTGTCCAGAGATGCGCGAGGGTTCGACATGACCCGGTGGTTTCATTCCGATTGCGCCTCCTTTGGTTCGGACCCTGTTTGTTCCGCCGAAGAGATTAATGGGTTCGCCCTCTTGAAGGGTAGCGACCAGGACGCTCTGAAGAAATTGGTTAGTAGAAGCCATGAGTCTAAGGTCCGCAAGAGGGATGAGGAAGAAGAAGATGGAATTGATGAAAGAGATCAAAAGAGAGTCGAGCTGTCTACCACTAGTTTGCAGCCAAAGTTAGATCTTGTCCTTACAGCTTCTGAGATAAAGACCAAATATAAGGATGCTACACTCTTACCTAAATGGAAAGCTTTCCAGACACTCATTTTTCTTGAGCAGGATGATGGACTGAATCATTCAAGTAAAAAAATAGCTGCATTTGATTTTGATGGCTGTCTGGCAAACACATCTGTTAAAAGAGTAGGTGCAGATGCGTGGTCTTTGATGCACCCTTCAATACCACAAAAACTACAGAGCTTGTACAATGATGGCTACAAGCTGGTAATATTTACGAACGAATCCAACATTGATAGATGGAAGAACAAGAGACAGGTTGCTGTGGACTCCAAACTTGGGCGTCTCAATAATTTCATCTCTAAAGTCAATGTCCCAATTCAGGTGTTTGTTGCTTGTGGAATTGGAAGCGGATCGGGTAAATCCGAAGAGGACCCGTTTAGGAAACCACAACCCGGGATGTGGTACATCATGGAGAACAACTTCAACGATGGCATCTCCATTGATATCAATCAATGTTTTTACGTGGGGGATGCAGCAGGAAGAGCCAAAGATCATAGTGATGCTGATATCAAGTTTGCTCAGACCATTGGATTGAAGTTTTATGTTCCTGAAGAATTTTTTGTTGAGTAA 1149 43.78 MSCFEGEISLPMLIVSTLRWSQTSCCKSISSSLFSHNPKHFTPIFFHRPPMPPASVKIVAEYAKSNRSTCKNCSKAIPAKGLRLGFVSRDARGFDMTRWFHSDCASFGSDPVCSAEEINGFALLKGSDQDALKKLVSRSHESKVRKRDEEEEDGIDERDQKRVELSTTSLQPKLDLVLTASEIKTKYKDATLLPKWKAFQTLIFLEQDDGLNHSSKKIAAFDFDGCLANTSVKRVGADAWSLMHPSIPQKLQSLYNDGYKLVIFTNESNIDRWKNKRQVAVDSKLGRLNNFISKVNVPIQVFVACGIGSGSGKSEEDPFRKPQPGMWYIMENNFNDGISIDINQCFYVGDAAGRAKDHSDADIKFAQTIGLKFYVPEEFFVE 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37581713 37586575 + Sed0006465.1 Sed04g2434 711037

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2434 382 Gene3D - 194 382 IPR023214 -
Sed04g2434 382 SMART zf_PARP_3 61 137 IPR001510 GO:0003677(InterPro)|GO:0008270(InterPro)
Sed04g2434 382 Pfam Polynucleotide kinase 3 phosphatase 217 380 IPR013954 -
Sed04g2434 382 NCBIfam HAD-IIIA family hydrolase 217 373 IPR006549 -
Sed04g2434 382 MobiDBLite consensus disorder prediction 137 163 - -
Sed04g2434 382 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 61 135 IPR001510 GO:0003677(InterPro)|GO:0008270(InterPro)
Sed04g2434 382 CDD HAD_PNP 217 380 - -
Sed04g2434 382 FunFam Bifunctional polynucleotide phosphatase/kinase 194 382 - -
Sed04g2434 382 NCBIfam DNA 3'-phosphatase 207 380 IPR006551 -
Sed04g2434 382 SUPERFAMILY HAD-like 213 380 IPR036412 -
Sed04g2434 382 PANTHER BIFUNCTIONAL POLYNUCLEOTIDE PHOSPHATASE/KINASE 48 380 - GO:0003690(PANTHER)|GO:0006281(PANTHER)|GO:0046403(PANTHER)|GO:0046404(PANTHER)|GO:0046939(PANTHER)
Sed04g2434 382 Gene3D - 54 151 IPR036957 GO:0003677(InterPro)|GO:0008270(InterPro)
Sed04g2434 382 ProSiteProfiles Zinc finger poly(ADP-ribose) polymerase (PARP)-type profile. 58 136 IPR001510 GO:0003677(InterPro)|GO:0008270(InterPro)
Sed04g2434 382 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 57 147 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2434 K08073 - - csv:101207352 582.408
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g109 . . . . . Bpe08g00982 . . . . . Cma09g00822 . Car09g00740 Sed04g2434 . . Bhi09g03513 Tan01g4317 Cmetu07g1764 . Hepe01g1442 Mch11g1008 . Cla11g01709 Cam11g1777 Cec11g1798 Cco11g1803 Clacu11g1936 Cmu11g1747 Cre11g2155 Cone6ag0195 Cone9ag0226 . . Lsi04g02011 Csa04g02284 Chy07g00022 Cme07g00535 . . . . . . Bma07g01141 . . . Cmo09g00817 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010926 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 1 2 1 29