Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2469 ATGGATTTGAATCGTGTTCGTGTTCGTGTCTGTGGGTTGCTGCTTTTTTTCAGCTGCTTCTTTGGATTAGGATCTGATGCCCAACTTCTGCCTCCACAAGAAGTTAGAACCCTTCAAGAAATATCTGCAAAGCTAAAAAACTTAAATTGGAAGGTCTCCCAAAATTCTTGCATCAGTGGCGACAGCTCTTCCAATTTATTTATCGATTCTACTCACGTGAGACAAGTCAACTGCACGTGCACTTCAATTTGCAGGGTTACCAACATACTGCTAAAGGGACAAAATCTAGTTGGAACACTGCCTGTTACATTTGCAAATCTATCTCAGCTGCGGGAGTTAGATCTCACTTACAATGTTATTTCTGGATCAATCCCTAAGGAATTTGCTCGCATTCCTCTTGTTACTTTTGCCATGGTGGGAAACCAACTTAGTGGTCAGATTCCTCCAGAAATTGGTGATATTCCTTCACTTGAGGAACTGGTGTTGGAAGACAATCAGATTGGAGGAAATCTTCCTCAGAGTCTCGGAAAACTGAGCCGCTTGCGTAGACTACTTCTTTCTTCCAATAATTTCACAGGGTCGATTCCACAATCTTTTGGAAACTTGAGGAACTTGACTGACTTTCGGATAGATGGAAACAACATATCAGGAAAGATACCTGACTTTATTGGTACCTGGATCCATCTGAGAAAACTTTATATTCAAGGCACTTCTTTGGAGAATCCCATTCCTCCAGCCATATCCGAGTTGAAAAACTTAACCGACCTTGTAATAAGTGATTTGAAGGGACCGCAGATAAAATTTCCCAATTTGGCTCAAATAACATCCTTACAAACATTGGTCTTAAGAAATTGCTTAATCGAGGGTCCTATCCCTAATTACATTGGAGGGCTTAATGAATTAAGAACTTTAGATCTAAGCTTCAACCGATTAAGCGGTCCAATTCCAGGGACATTTCAAAATCTGCTGGTAAAAAAAAATGAGTTCATGTTTCTGACTGACAACTCTTTAAGCGGCCAAGTGCCTGATTGGATTACGAACGCCGACAACAACAGGAACATAGATTTATCTTACAACAATTTTACTGATTTGGCTGCTTCCAGTTGTGCGCAGTCTAATCATGTGAACTTGATTTCTAGTTCAGCGGTGAAAAATGAAAATACTGATCATTGGTGCTTGATGAAGGATTTCCCTTGTCCTACAGAAACTCGATTTCATTCGTTGTTCATTAATTGTGGAGGACGGAGCATGGAGTTTAATGGTAGTAAATATGAAGCGGATGATACTCAAGGTGGCGAATCAGTTTTCTTTTCTTCCGTAGAAAGATGGGGTTATAGTAGTACTGGTCTTTTCTTGAGAAATGATCGTCTTCCTTACATAGTATCAACTTCAAGTAGCAATGGTTCAGCTGTTTCAGGCATCTATGCCACAGCTCGAGTCTCACCTCTTTCTCTCAAGTATTATGGATTTTGCTTGCGAAATGGAAGTTACAATGTCAAGCTTCACTTTGCTGAAATTATGTTTACTGCTGACCAGACTTATACCAGCCAGGGGAAACGCATATTTGATATCTCAATTCAAAGAAACTTGGTTGAAAAAAAATTTAACATAATGGAGAAAGCTGGGGGTGCTAGCAAGAGCTTCGTTTTGGAAGAGCCTAATGTTGTAGTCAATGGAAGTACTCTAGAGATCCATTTATATTGGGCTGGTAAAGGAACAGGTTACATTCCAGTAACAGGGGTGTATGGACCTCTAATATCAGCAATCACTGTCACACCAAACTTTGACGTGGAGACTAATGTGGGAAGGGAAACTAGAAGGTTATCTGTGGAAGCTATTGTTGGCATTGTTGTTGCTGTTTTGTTGATCCTCGTTTTAGTATTGGTTGTTCTTCTTCTTCGATGGACGGGTTGCTTAGGGGGAAAGGAAACTGAGGACGAGGAACTTCAGGACCTAAAATTACAAACAAATCATTTCAGTTTAAAACTAATCAAAGCAGCCACCAACAACTTTGACTCTACACTCAAGATAGGCGAGGGAGGCTTTGGTCCTGTCTTCAAGGGAGTACTATCGGATGGCACTTCAATTGCCGTAAAACAACTATCTTCTAAGTCAAGACAGGGGAACCGTGAATTCATCACAGAAATCGGCATGATATCTGCATTACAACATCCAAATCTTGTTAAGCTTTATGGTTGTTGCATTGAAGGAAACCAGTTATTGCTTATTTATGAGTATCTAGAGAACAATAATCTTGCCCGTGCACTTTTTTACCCTGAGGAGCATTCACTACATTTGGACTGGCCAATAAGAATGAAGATATGTTTGGGAATAGCAAAGGGGTTGGCTTACCTTCATGAAGAATCTAGATTGAAAATTGTTCACAGAGATATTAAAGCTACAAACGTGCTACTTGATGGAAGCTTGAATGCCAAAATCTCAGACTTTGGGTTGGCTAAGCTTGATGAAGAGGAGAACACTCATATCAGCACAAGAATTGCAGGCACAAGAGGTTACATGGCTCCTGAATATGCAACAAGAGGTTATTTGACTGATAAAGCCGACGTCTATAGCTTTGGAGTTGTGGCATTGGAGATTGTTAGCGGGAAAAGTAACACGAATTACATGCCAAAAGAGCAATGTGTTTTTCTTCTTGATTGGGCTTTTGTTCTACAAGATGAAGGCAACCTGTTGAAACTTGTTGATCCAAGTCTTGGCCAACATTACCCAGAAGAGGAGGTGATGAGGATGCTTCATATAGCTCTCTTGTGCACAAACTTGTCTCCAAGTCTCAGACCATGCATGTCTTCTGTGGTTAGCATGCTCGAGGGTAAGATCCCGATCGAAGTATCGAACATCAAGCGTAACACAACTGATGGAAATGCAATGTTGAAAGTCTTTGAAAACCTTTCACGAGATAGCTCAACAAGCATTTCAATATCGTCGCAAGACACTGAGGTGCAAAGAATCATGAAAGGCATCGACTCATCATCATCTACTTATCCTACCCAAAGCACTGATGAGAGACAATATTCTTCTCAAACTAGTAGTCTCCTCAATCGAGAAGCGTTCAAGGATTCTACTCACATGACTAAGTCAAAGTCAGCATGCCTCTGA 3117 40.62 MDLNRVRVRVCGLLLFFSCFFGLGSDAQLLPPQEVRTLQEISAKLKNLNWKVSQNSCISGDSSSNLFIDSTHVRQVNCTCTSICRVTNILLKGQNLVGTLPVTFANLSQLRELDLTYNVISGSIPKEFARIPLVTFAMVGNQLSGQIPPEIGDIPSLEELVLEDNQIGGNLPQSLGKLSRLRRLLLSSNNFTGSIPQSFGNLRNLTDFRIDGNNISGKIPDFIGTWIHLRKLYIQGTSLENPIPPAISELKNLTDLVISDLKGPQIKFPNLAQITSLQTLVLRNCLIEGPIPNYIGGLNELRTLDLSFNRLSGPIPGTFQNLLVKKNEFMFLTDNSLSGQVPDWITNADNNRNIDLSYNNFTDLAASSCAQSNHVNLISSSAVKNENTDHWCLMKDFPCPTETRFHSLFINCGGRSMEFNGSKYEADDTQGGESVFFSSVERWGYSSTGLFLRNDRLPYIVSTSSSNGSAVSGIYATARVSPLSLKYYGFCLRNGSYNVKLHFAEIMFTADQTYTSQGKRIFDISIQRNLVEKKFNIMEKAGGASKSFVLEEPNVVVNGSTLEIHLYWAGKGTGYIPVTGVYGPLISAITVTPNFDVETNVGRETRRLSVEAIVGIVVAVLLILVLVLVVLLLRWTGCLGGKETEDEELQDLKLQTNHFSLKLIKAATNNFDSTLKIGEGGFGPVFKGVLSDGTSIAVKQLSSKSRQGNREFITEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYLENNNLARALFYPEEHSLHLDWPIRMKICLGIAKGLAYLHEESRLKIVHRDIKATNVLLDGSLNAKISDFGLAKLDEEENTHISTRIAGTRGYMAPEYATRGYLTDKADVYSFGVVALEIVSGKSNTNYMPKEQCVFLLDWAFVLQDEGNLLKLVDPSLGQHYPEEEVMRMLHIALLCTNLSPSLRPCMSSVVSMLEGKIPIEVSNIKRNTTDGNAMLKVFENLSRDSSTSISISSQDTEVQRIMKGIDSSSSTYPTQSTDERQYSSQTSSLLNREAFKDSTHMTKSKSACL 1038
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37833935 37847629 + Sed0011099.1 Sed04g2469 711072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2469 1038 CDD STKc_IRAK 677 944 - -
Sed04g2469 1038 Pfam Leucine Rich Repeat 276 298 IPR001611 GO:0005515(InterPro)
Sed04g2469 1038 Pfam Leucine Rich Repeat 109 129 IPR001611 GO:0005515(InterPro)
Sed04g2469 1038 Pfam Leucine Rich Repeat 301 322 IPR001611 GO:0005515(InterPro)
Sed04g2469 1038 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 269 364 - -
Sed04g2469 1038 Gene3D Phosphorylase Kinase; domain 1 639 746 - -
Sed04g2469 1038 FunFam Putative LRR receptor-like serine/threonine-protein kinase 747 954 - -
Sed04g2469 1038 SUPERFAMILY Protein kinase-like (PK-like) 655 948 IPR011009 -
Sed04g2469 1038 Pfam Malectin domain 408 589 IPR021720 -
Sed04g2469 1038 Pfam Leucine rich repeat 155 215 IPR001611 GO:0005515(InterPro)
Sed04g2469 1038 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 640 746 - -
Sed04g2469 1038 Pfam Protein tyrosine and serine/threonine kinase 676 940 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g2469 1038 Gene3D Transferase(Phosphotransferase) domain 1 747 963 - -
Sed04g2469 1038 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 14 959 IPR051824 -
Sed04g2469 1038 SMART serkin_6 671 942 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g2469 1038 SMART LRR_typ_2 298 321 IPR003591 -
Sed04g2469 1038 SMART LRR_typ_2 107 130 IPR003591 -
Sed04g2469 1038 SMART LRR_typ_2 178 201 IPR003591 -
Sed04g2469 1038 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 405 594 - -
Sed04g2469 1038 ProSitePatterns Serine/Threonine protein kinases active-site signature. 793 805 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g2469 1038 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 172 264 - -
Sed04g2469 1038 Gene3D Ribonuclease Inhibitor 264 377 IPR032675 -
Sed04g2469 1038 ProSiteProfiles Protein kinase domain profile. 671 946 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g2469 1038 SUPERFAMILY L domain-like 65 321 - -
Sed04g2469 1038 MobiDBLite consensus disorder prediction 994 1038 - -
Sed04g2469 1038 Gene3D Ribonuclease Inhibitor 31 263 IPR032675 -
Sed04g2469 1038 Gene3D - 406 594 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2469 Sed-Chr4:37833935 Sed05g2497 Sed-Chr5:37030116 0.00E+00 dispersed
Sed04g2469 Sed-Chr4:37833935 Sed04g2478 Sed-Chr4:37892077 3.80E-288 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79039 PF07714 PK_Tyr_Ser-Thr 2.10E-47 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2469 - - - 0.0