Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2478 ATGGATTTTAAAATATTTCATGTTTATGTTCTTGTCTGCTGGTTTCTGCTTTTCAACTGCTTCTCTAGATTTGGATCTTATGCCCAACCTCTGCCTCAACAAGAAGTGAGAGCCCTACAAGCAATATCTGCAGAGCTAAAGAACACAAACTGGAACGTGGATCAAAATTCTTGCAACAACAATGGCGGCAATGGATTTAACAATCAAGTTATCGATGGCGATAGAATCATCAGAGAGGTTAACTGCACTTGCTCCATTGATTCTTGCAGTGTCACCTCCATACGACTGAAGACTCTCGATCTAGTTGGAGTTCTACCCGCAGCATTTGCAAATCTAACTCAACTGCGGATCTTAGATCTCGCTCGCAATTTTATAAATGGATCAATCCCTAGGGAGTTTGGTCGCCTTTCTCAGCTTGTTACTCTTTCCATGCTGGGAAACCGACTCAGTGGTCAAGTTCCTGCAGAAATTGGTGATATTTCTTCACTTGAAGAACTCGTCTTAGAACACAATCAGCTCGGAGGAAATCTTCCCCAAAGCCTCGGCAGTCTAAGCCACTTGAAAAAACTATTTCTTTCTGCAAATAATTTCATAGGCCCAATTCCAGAATCTTATGGAAACTTGAAGAACTTGACTGATTTTCGAATAGATGGAAATGATATATCAGGAAAGCTTCCCGAATTTATCAGAAATTGGGCTGAACTTGTGAGATTGGATATTCAAGGAACATCTATGGAGAACCCCATTCCCCATGCCATATCCGAGTTACAAAAATTAGCTGAACTGAGGATAACTGATTTGAAGGGACCATCGATTAGTTTCCCCAATTTGACTCAATGGACATCTTTAGAAACATTGATCTTCAGAAATTGCGGAATTGAGGGTCAAATCCCTCAATATTTTGAACTTTTTCGTAGATTAAGAACTTTGGATTTAAGCTTCAACAGATTAAATGGTACAGTTCCAGAGCCAGTATTACGGAATCTATCGCAGCGGGATGTTCATTCTTTGTTTCTAAATGACAACTTGCTGACTGGTCAACTGCCAAAACGGACCTTGCCTGAAGGAAGAAAAGGCAACATGGATTTATCTTACAACATATTTACAGATTCACCTGATCTTCCCCCTTGTCATGAAAATAAAGTGAACTTGCTTTCTGGTTATTCAAATTCAAGTAATGAAAGTGTTACTTGGTGCCTGAGGAAGGATCTCCCTTGCCCTAGAGAACCTCGAACTCGTTCGTTGTTCATTAACTGTGGAGGAGAGATGATGAAGTTTGAAGGTCATGACTACGAAAGGGATACAACTATGGATAGTGCTTCCAAATTCTCTTTTTCAGATAGATGGGGCTACAGTAGTACTGGCATTTTCACGGATAATGAGACTTTTGCTCAATATTTAAGTAGCAATGAATTTACTTCGAGCATCTATAGGACGGCTCGGGGTGCACCTGTTTCGCTTAAGTACTACGGATTTTGCTTGCAAAGTGGAAGTTACAATGTGAAGCTTCACTTTGCTGAAACAGTGTTTACTACAGGCCAAACATTCAGTAGCTTGGGGAAGCGTATTTTTGACATCTCAATCCAAAGAAAATTGGTTGAAAAAGATTTCAACATAATGGAGAGAGCCGGAGGTGCTGGCCAGAGCTATGTTTTGGAAGTGCGTAATGTTATAATAAGTGGCAGCACTCTTGAGATCCACTTATACTGGGCTGGGAAAGGGACAAATGCCATTCCATACAAAGGAGTGTTTGGACCTCTTATATCTGGAATCACAGTTACATCAAATGATGAGGGACAAGGGCTATCTGCTGGAGCTATTGCTGGCATTGTTATGGGTAGTTTTGTGTTCGTTGTTTTAGTATTGGTTATTCTTCGAAGGAAGGGCTACTTAGGTGGGAAGGCAACTGAAGACAAAGAACTTCAAGACCTAAAGTTACAAACAGGTTATTTCAGTCTAAGACAAATCAAAGCAGCCACCAAAAATTTCGACTTGGCATGTAAGATAGGCGAGGGAGGTTTTGGTCCTGTCTACAAGGGAGTACTGCCAGATGGCACTTCAATTGCTGTTAAGCAACTGTCGTCTAAATCAAGACAAGGAAATCGTGAATTCATCACTGAAATTGGCATGATATCTGCATTACAACATCCAAATCTTGTTAAGCTTTATGGTTGTTGTATTGAAGGAAACCAGTTGTTGCTTATTTATGAGTATCTTGAGAATAATAATCTTGCTCGTGCACTTTTTGGTTCCAAGGAGCACTCGCTACATTTGGATTGGGCAGTAAGAATGAAGATATGCTTGGGAGTAGCAAAAGGGTTGGCTTACCTTCACGAAGAATCAAGATTGAAAATTGTTCACAGAGATATTAAAGCTACCAATGTGTTACTTGATAAAAGTCTGAATGCCAAAATCTCAGACTTTGGGTTGGCTAAGCTTGATGAAGAGGAGAATACCCATATCAGCACAAGAATCGCTGGCACAATAGGTTATATGGCTCCAGAATATGCAACAAGGGGTTATTTGACCGATAAAGCTGATGTTTATAGCTTTGGAGTCGTGGCTTTAGAAATTGTTAGTGGAAAAAGCAATACAAATTACAGGCCAAAAGAAGAGTTCGTGTATCTTCTTGACTGGGCTATCCTTCTACAAGAAGAAGGAAACCTGCTGGAACTTGTTGATCCAAATCTTGGCTCAGAATACTCAAAAGAAGAAGTCATGAGGATGCTTAATATCGCTCTCTTGTGCACGAACCAGTCGCCGAGCCTTAGGCCATCGATGTCTTCCGTGGTTAGCATGCTTGAAGGTAAGATTCCAATCGAAGCATCAAAGATCAAACGCAATGTAGCTGATAGAGATGCAAGGTTCAAAGCCTTTGAGAAGTTGTCACAAGACAGCCTAACAAGCATTTCGACATCATCACAAGGCATTCAAATGCAAAGAAGCATGTTAGTTGATGGGCCATGGATTGACTCATCCTCTACTTCTACACAAAACATAGACGAAACTCGAGAGTATTCTTCAACCAGAAGTCTCCTTCTGGATTGA 3048 40.62 MDFKIFHVYVLVCWFLLFNCFSRFGSYAQPLPQQEVRALQAISAELKNTNWNVDQNSCNNNGGNGFNNQVIDGDRIIREVNCTCSIDSCSVTSIRLKTLDLVGVLPAAFANLTQLRILDLARNFINGSIPREFGRLSQLVTLSMLGNRLSGQVPAEIGDISSLEELVLEHNQLGGNLPQSLGSLSHLKKLFLSANNFIGPIPESYGNLKNLTDFRIDGNDISGKLPEFIRNWAELVRLDIQGTSMENPIPHAISELQKLAELRITDLKGPSISFPNLTQWTSLETLIFRNCGIEGQIPQYFELFRRLRTLDLSFNRLNGTVPEPVLRNLSQRDVHSLFLNDNLLTGQLPKRTLPEGRKGNMDLSYNIFTDSPDLPPCHENKVNLLSGYSNSSNESVTWCLRKDLPCPREPRTRSLFINCGGEMMKFEGHDYERDTTMDSASKFSFSDRWGYSSTGIFTDNETFAQYLSSNEFTSSIYRTARGAPVSLKYYGFCLQSGSYNVKLHFAETVFTTGQTFSSLGKRIFDISIQRKLVEKDFNIMERAGGAGQSYVLEVRNVIISGSTLEIHLYWAGKGTNAIPYKGVFGPLISGITVTSNDEGQGLSAGAIAGIVMGSFVFVVLVLVILRRKGYLGGKATEDKELQDLKLQTGYFSLRQIKAATKNFDLACKIGEGGFGPVYKGVLPDGTSIAVKQLSSKSRQGNREFITEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYLENNNLARALFGSKEHSLHLDWAVRMKICLGVAKGLAYLHEESRLKIVHRDIKATNVLLDKSLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYATRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWAILLQEEGNLLELVDPNLGSEYSKEEVMRMLNIALLCTNQSPSLRPSMSSVVSMLEGKIPIEASKIKRNVADRDARFKAFEKLSQDSLTSISTSSQGIQMQRSMLVDGPWIDSSSTSTQNIDETREYSSTRSLLLD 1015
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 37892077 37901975 - Sed0007429.1 Sed04g2478 711081
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2478 1015 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 10 960 IPR051824 -
Sed04g2478 1015 FunFam Putative LRR receptor-like serine/threonine-protein kinase 739 946 - -
Sed04g2478 1015 Pfam Leucine rich repeat 92 149 IPR001611 GO:0005515(InterPro)
Sed04g2478 1015 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 632 738 - -
Sed04g2478 1015 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 178 270 - -
Sed04g2478 1015 Gene3D Transferase(Phosphotransferase) domain 1 739 959 - -
Sed04g2478 1015 Gene3D Ribonuclease Inhibitor 270 395 IPR032675 -
Sed04g2478 1015 Pfam Leucine Rich Repeat 162 184 IPR001611 GO:0005515(InterPro)
Sed04g2478 1015 Pfam Leucine Rich Repeat 306 324 IPR001611 GO:0005515(InterPro)
Sed04g2478 1015 Pfam Leucine Rich Repeat 186 208 IPR001611 GO:0005515(InterPro)
Sed04g2478 1015 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 412 596 - -
Sed04g2478 1015 CDD STKc_IRAK 669 936 - -
Sed04g2478 1015 Gene3D - 413 598 - -
Sed04g2478 1015 Gene3D Ribonuclease Inhibitor 32 269 IPR032675 -
Sed04g2478 1015 SUPERFAMILY Protein kinase-like (PK-like) 647 937 IPR011009 -
Sed04g2478 1015 Gene3D Phosphorylase Kinase; domain 1 631 738 - -
Sed04g2478 1015 ProSiteProfiles Protein kinase domain profile. 663 938 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g2478 1015 SMART serkin_6 663 934 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g2478 1015 SUPERFAMILY L domain-like 77 349 - -
Sed04g2478 1015 Pfam Protein tyrosine and serine/threonine kinase 665 934 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g2478 1015 ProSitePatterns Serine/Threonine protein kinases active-site signature. 785 797 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g2478 1015 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 86 177 - -
Sed04g2478 1015 Pfam Malectin domain 415 591 IPR021720 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2478 Sed-Chr4:37892077 Sed04g2482 Sed-Chr4:37892077 0.00E+00 dispersed
Sed04g2469 Sed-Chr4:37833935 Sed04g2478 Sed-Chr4:37892077 3.80E-288 proximal
Sed04g2478 Sed-Chr4:37892077 Sed04g2479 Sed-Chr4:37892077 0.00E+00 tandem
Sed05g2512 Sed-Chr5:37202043 Sed04g2478 Sed-Chr4:37892077 1.20E-06 transposed
Sed04g2478 Sed-Chr4:37892077 Sed05g2490 Sed-Chr5:36926126 1.30E-187 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79040 PF07714 PK_Tyr_Ser-Thr 2.70E-49 CL0016 Sed PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2478 - - - 0.0