Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g2478 | ATGGATTTTAAAATATTTCATGTTTATGTTCTTGTCTGCTGGTTTCTGCTTTTCAACTGCTTCTCTAGATTTGGATCTTATGCCCAACCTCTGCCTCAACAAGAAGTGAGAGCCCTACAAGCAATATCTGCAGAGCTAAAGAACACAAACTGGAACGTGGATCAAAATTCTTGCAACAACAATGGCGGCAATGGATTTAACAATCAAGTTATCGATGGCGATAGAATCATCAGAGAGGTTAACTGCACTTGCTCCATTGATTCTTGCAGTGTCACCTCCATACGACTGAAGACTCTCGATCTAGTTGGAGTTCTACCCGCAGCATTTGCAAATCTAACTCAACTGCGGATCTTAGATCTCGCTCGCAATTTTATAAATGGATCAATCCCTAGGGAGTTTGGTCGCCTTTCTCAGCTTGTTACTCTTTCCATGCTGGGAAACCGACTCAGTGGTCAAGTTCCTGCAGAAATTGGTGATATTTCTTCACTTGAAGAACTCGTCTTAGAACACAATCAGCTCGGAGGAAATCTTCCCCAAAGCCTCGGCAGTCTAAGCCACTTGAAAAAACTATTTCTTTCTGCAAATAATTTCATAGGCCCAATTCCAGAATCTTATGGAAACTTGAAGAACTTGACTGATTTTCGAATAGATGGAAATGATATATCAGGAAAGCTTCCCGAATTTATCAGAAATTGGGCTGAACTTGTGAGATTGGATATTCAAGGAACATCTATGGAGAACCCCATTCCCCATGCCATATCCGAGTTACAAAAATTAGCTGAACTGAGGATAACTGATTTGAAGGGACCATCGATTAGTTTCCCCAATTTGACTCAATGGACATCTTTAGAAACATTGATCTTCAGAAATTGCGGAATTGAGGGTCAAATCCCTCAATATTTTGAACTTTTTCGTAGATTAAGAACTTTGGATTTAAGCTTCAACAGATTAAATGGTACAGTTCCAGAGCCAGTATTACGGAATCTATCGCAGCGGGATGTTCATTCTTTGTTTCTAAATGACAACTTGCTGACTGGTCAACTGCCAAAACGGACCTTGCCTGAAGGAAGAAAAGGCAACATGGATTTATCTTACAACATATTTACAGATTCACCTGATCTTCCCCCTTGTCATGAAAATAAAGTGAACTTGCTTTCTGGTTATTCAAATTCAAGTAATGAAAGTGTTACTTGGTGCCTGAGGAAGGATCTCCCTTGCCCTAGAGAACCTCGAACTCGTTCGTTGTTCATTAACTGTGGAGGAGAGATGATGAAGTTTGAAGGTCATGACTACGAAAGGGATACAACTATGGATAGTGCTTCCAAATTCTCTTTTTCAGATAGATGGGGCTACAGTAGTACTGGCATTTTCACGGATAATGAGACTTTTGCTCAATATTTAAGTAGCAATGAATTTACTTCGAGCATCTATAGGACGGCTCGGGGTGCACCTGTTTCGCTTAAGTACTACGGATTTTGCTTGCAAAGTGGAAGTTACAATGTGAAGCTTCACTTTGCTGAAACAGTGTTTACTACAGGCCAAACATTCAGTAGCTTGGGGAAGCGTATTTTTGACATCTCAATCCAAAGAAAATTGGTTGAAAAAGATTTCAACATAATGGAGAGAGCCGGAGGTGCTGGCCAGAGCTATGTTTTGGAAGTGCGTAATGTTATAATAAGTGGCAGCACTCTTGAGATCCACTTATACTGGGCTGGGAAAGGGACAAATGCCATTCCATACAAAGGAGTGTTTGGACCTCTTATATCTGGAATCACAGTTACATCAAATGATGAGGGACAAGGGCTATCTGCTGGAGCTATTGCTGGCATTGTTATGGGTAGTTTTGTGTTCGTTGTTTTAGTATTGGTTATTCTTCGAAGGAAGGGCTACTTAGGTGGGAAGGCAACTGAAGACAAAGAACTTCAAGACCTAAAGTTACAAACAGGTTATTTCAGTCTAAGACAAATCAAAGCAGCCACCAAAAATTTCGACTTGGCATGTAAGATAGGCGAGGGAGGTTTTGGTCCTGTCTACAAGGGAGTACTGCCAGATGGCACTTCAATTGCTGTTAAGCAACTGTCGTCTAAATCAAGACAAGGAAATCGTGAATTCATCACTGAAATTGGCATGATATCTGCATTACAACATCCAAATCTTGTTAAGCTTTATGGTTGTTGTATTGAAGGAAACCAGTTGTTGCTTATTTATGAGTATCTTGAGAATAATAATCTTGCTCGTGCACTTTTTGGTTCCAAGGAGCACTCGCTACATTTGGATTGGGCAGTAAGAATGAAGATATGCTTGGGAGTAGCAAAAGGGTTGGCTTACCTTCACGAAGAATCAAGATTGAAAATTGTTCACAGAGATATTAAAGCTACCAATGTGTTACTTGATAAAAGTCTGAATGCCAAAATCTCAGACTTTGGGTTGGCTAAGCTTGATGAAGAGGAGAATACCCATATCAGCACAAGAATCGCTGGCACAATAGGTTATATGGCTCCAGAATATGCAACAAGGGGTTATTTGACCGATAAAGCTGATGTTTATAGCTTTGGAGTCGTGGCTTTAGAAATTGTTAGTGGAAAAAGCAATACAAATTACAGGCCAAAAGAAGAGTTCGTGTATCTTCTTGACTGGGCTATCCTTCTACAAGAAGAAGGAAACCTGCTGGAACTTGTTGATCCAAATCTTGGCTCAGAATACTCAAAAGAAGAAGTCATGAGGATGCTTAATATCGCTCTCTTGTGCACGAACCAGTCGCCGAGCCTTAGGCCATCGATGTCTTCCGTGGTTAGCATGCTTGAAGGTAAGATTCCAATCGAAGCATCAAAGATCAAACGCAATGTAGCTGATAGAGATGCAAGGTTCAAAGCCTTTGAGAAGTTGTCACAAGACAGCCTAACAAGCATTTCGACATCATCACAAGGCATTCAAATGCAAAGAAGCATGTTAGTTGATGGGCCATGGATTGACTCATCCTCTACTTCTACACAAAACATAGACGAAACTCGAGAGTATTCTTCAACCAGAAGTCTCCTTCTGGATTGA | 3048 | 40.62 | MDFKIFHVYVLVCWFLLFNCFSRFGSYAQPLPQQEVRALQAISAELKNTNWNVDQNSCNNNGGNGFNNQVIDGDRIIREVNCTCSIDSCSVTSIRLKTLDLVGVLPAAFANLTQLRILDLARNFINGSIPREFGRLSQLVTLSMLGNRLSGQVPAEIGDISSLEELVLEHNQLGGNLPQSLGSLSHLKKLFLSANNFIGPIPESYGNLKNLTDFRIDGNDISGKLPEFIRNWAELVRLDIQGTSMENPIPHAISELQKLAELRITDLKGPSISFPNLTQWTSLETLIFRNCGIEGQIPQYFELFRRLRTLDLSFNRLNGTVPEPVLRNLSQRDVHSLFLNDNLLTGQLPKRTLPEGRKGNMDLSYNIFTDSPDLPPCHENKVNLLSGYSNSSNESVTWCLRKDLPCPREPRTRSLFINCGGEMMKFEGHDYERDTTMDSASKFSFSDRWGYSSTGIFTDNETFAQYLSSNEFTSSIYRTARGAPVSLKYYGFCLQSGSYNVKLHFAETVFTTGQTFSSLGKRIFDISIQRKLVEKDFNIMERAGGAGQSYVLEVRNVIISGSTLEIHLYWAGKGTNAIPYKGVFGPLISGITVTSNDEGQGLSAGAIAGIVMGSFVFVVLVLVILRRKGYLGGKATEDKELQDLKLQTGYFSLRQIKAATKNFDLACKIGEGGFGPVYKGVLPDGTSIAVKQLSSKSRQGNREFITEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYLENNNLARALFGSKEHSLHLDWAVRMKICLGVAKGLAYLHEESRLKIVHRDIKATNVLLDKSLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYATRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWAILLQEEGNLLELVDPNLGSEYSKEEVMRMLNIALLCTNQSPSLRPSMSSVVSMLEGKIPIEASKIKRNVADRDARFKAFEKLSQDSLTSISTSSQGIQMQRSMLVDGPWIDSSSTSTQNIDETREYSSTRSLLLD | 1015 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 37892077 | 37901975 | - | Sed0007429.1 | Sed04g2478 | 711081 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g2478 | 1015 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED | 10 | 960 | IPR051824 | - | |
Sed04g2478 | 1015 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase | 739 | 946 | - | - | |
Sed04g2478 | 1015 | Pfam | Leucine rich repeat | 92 | 149 | IPR001611 | GO:0005515(InterPro) | |
Sed04g2478 | 1015 | FunFam | probable LRR receptor-like serine/threonine-protein kinase At1g53430 | 632 | 738 | - | - | |
Sed04g2478 | 1015 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 178 | 270 | - | - | |
Sed04g2478 | 1015 | Gene3D | Transferase(Phosphotransferase) domain 1 | 739 | 959 | - | - | |
Sed04g2478 | 1015 | Gene3D | Ribonuclease Inhibitor | 270 | 395 | IPR032675 | - | |
Sed04g2478 | 1015 | Pfam | Leucine Rich Repeat | 162 | 184 | IPR001611 | GO:0005515(InterPro) | |
Sed04g2478 | 1015 | Pfam | Leucine Rich Repeat | 306 | 324 | IPR001611 | GO:0005515(InterPro) | |
Sed04g2478 | 1015 | Pfam | Leucine Rich Repeat | 186 | 208 | IPR001611 | GO:0005515(InterPro) | |
Sed04g2478 | 1015 | FunFam | Putative leucine-rich repeat receptor-like serine/threonine-protein kinase | 412 | 596 | - | - | |
Sed04g2478 | 1015 | CDD | STKc_IRAK | 669 | 936 | - | - | |
Sed04g2478 | 1015 | Gene3D | - | 413 | 598 | - | - | |
Sed04g2478 | 1015 | Gene3D | Ribonuclease Inhibitor | 32 | 269 | IPR032675 | - | |
Sed04g2478 | 1015 | SUPERFAMILY | Protein kinase-like (PK-like) | 647 | 937 | IPR011009 | - | |
Sed04g2478 | 1015 | Gene3D | Phosphorylase Kinase; domain 1 | 631 | 738 | - | - | |
Sed04g2478 | 1015 | ProSiteProfiles | Protein kinase domain profile. | 663 | 938 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed04g2478 | 1015 | SMART | serkin_6 | 663 | 934 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed04g2478 | 1015 | SUPERFAMILY | L domain-like | 77 | 349 | - | - | |
Sed04g2478 | 1015 | Pfam | Protein tyrosine and serine/threonine kinase | 665 | 934 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed04g2478 | 1015 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 785 | 797 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed04g2478 | 1015 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 86 | 177 | - | - | |
Sed04g2478 | 1015 | Pfam | Malectin domain | 415 | 591 | IPR021720 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g2478 | Sed-Chr4:37892077 | Sed04g2482 | Sed-Chr4:37892077 | 0.00E+00 | dispersed | |
Sed04g2469 | Sed-Chr4:37833935 | Sed04g2478 | Sed-Chr4:37892077 | 3.80E-288 | proximal | |
Sed04g2478 | Sed-Chr4:37892077 | Sed04g2479 | Sed-Chr4:37892077 | 0.00E+00 | tandem | |
Sed05g2512 | Sed-Chr5:37202043 | Sed04g2478 | Sed-Chr4:37892077 | 1.20E-06 | transposed | |
Sed04g2478 | Sed-Chr4:37892077 | Sed05g2490 | Sed-Chr5:36926126 | 1.30E-187 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79040 | PF07714 | PK_Tyr_Ser-Thr | 2.70E-49 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g2478 | - | - | - | 0.0 |