Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2480 ATGGATTTTAAAATATTTCATGTTTATGTTCTTGTCTGCTGGTTTCTGCTTTTCAACTGCTTCTCTAGATTTGGATCTTATGCCCAACCTCTGCCTCAACAAGAAGTGAGAGCCCTACAAGCAATATCTGCAGAGCTAAAGAACACAAACTGGAACGTGGATCAAAATTCTTGCAACAACAATGGCGGCAATGGATTTAACAATCAAGTTATCGATGGCGATAGAATCATCAGAGAGGTTAACTGCACTTGCTCCATTGATTCTTGCAGTGTCACCTCCATACGACTGAAGACTCTCGATCTAGTTGGAGTTCTACCCGCAGCATTTGCAAATCTAACTCAACTGCGGATCTTAGATCTCGCTCGCAATTTTATAAATGGATCAATCCCTAGGGAGTTTGGTCGCCTTTCTCAGCTTGTTACTCTTTCCATGCTGGGAAACCGACTCAGTGGTCAAGTTCCTGCAGAAATTGGTGATATTTCTTCACTTGAAGAACTCGTCTTAGAACACAATCAGCTCGGAGGAAATCTTCCCCAAAGCCTCGGCAGTCTAAGCCACTTGAAAAAACTATTTCTTTCTGCAAATAATTTCATAGGCCCAATTCCAGAATCTTATGGAAACTTGAAGAACTTGACTGATTTTCGAATAGATGGAAATGATATATCAGGAAAGCTTCCCGAATTTATCAGAAATTGGGCTGAACTTGTGAGATTGGATATTCAAGGAACATCTATGGAGAACCCCATTCCCCATGCCATATCCGAGTTACAAAAATTAGCTGAACTGAGGATAACTGATTTGAAGGGACCATCGATTAGTTTCCCCAATTTGACTCAATGGACATCTTTAGAAACATTGATCTTCAGAAATTGCGGAATTGAGGGTCAAATCCCTCAATATTTTGAACTTTTTCGTAGATTAAGAACTTTGGATTTAAGCTTCAACAGATTAAATGGTACAGTTCCAGAGCCAGTATTACGGAATCTATCGCAGCGGGATGTTCATTCTTTGTTTCTAAATGACAACTTGCTGACTGGTCAACTGCCAAAACGGACCTTGCCTGAAGGAAGAAAAGGCAACATGGATTTATCTTACAACATATTTACAGATTCACCTGATCTTCCCCCTTGTCATGAAAATAAAGTGAACTTGCTTTCTGGTTATTCAAATTCAAGTAATGAAAGTGTTACTTGGTGCCTGAGGAAGGATCTCCCTTGCCCTAGAGAACCTCGAACTCGTTCGTTGTTCATTAACTGTGGAGGAGAGATGATGAAGTTTGAAGGTCATGACTACGAAAGGGATACAACTATGGATAGTGCTTCCAAATTCTCTTTTTCAGATAGATGGGGCTACAGTAGTACTGGCATTTTCACGGATAATGAGACTTTTGCTCAATATTTAAGTAGCAATGAATTTACTTCGAGCATCTATAGGACGGCTCGGGGTGCACCTGTTTCGCTTAAGTACTACGGATTTTGCTTGCAAAGTGGAAGTTACAATGTGAAGCTTCACTTTGCTGAAACAGTGTTTACTACAGGCCAAACATTCAGTAGCTTGGGGAAGCGTATTTTTGACATCTCAATCCAAAGAAAATTGGTTGAAAAAGATTTCAACATAATGGAGAGAGCCGGAGGTGCTGGCCAGAGCTATGTTTTGGAAGTGCGTAATGTTATAATAAGTGGCAGCACTCTTGAGATCCACTTATACTGGGCTGGGAAAGGGACAAATGCCATTCCATACAAAGGAGTGTTTGGACCTCTTATATCTGGAATCACAGTTACATCAAATGATGAGGGACAAGGGCTATCTGCTGGAGCTATTGCTGGCATTGTTATGGGTAGTTTTGTGTTCGTTGTTTTAGTATTGGTTATTCTTCGAAGGAAGGGCTACTTAGGTGGGAAGGCAACTGAAGACAAAGAACTTCAAGACCTAAAGTTACAAACAGGTTATTTCAGTCTAAGACAAATCAAAGCAGCCACCAAAAATTTCGACTTGGCATGTAAGATAGGCGAGGGAGGTTTTGGTCCTGTCTACAAGGGAGTACTGCCAGATGGCACTTCAATTGCTGTTAAGCAACTGTCGTCTAAATCAAGACAAGGAAATCGTGAATTCATCACTGAAATTGGCATGATATCTGCATTACAACATCCAAATCTTGTTAAGCTTTATGGTTGTTGTATTGAAGGAAACCAGTTGTTGCTTATTTATGAGTATCTTGAGAATAATAATCTTGCTCGTGCACTTTTTGGTTCCAAGGAGCACTCGCTACATTTGGATTGGGCAGTAAGAATGAAGATATGCTTGGGAGTAGCAAAAGGGTTGGCTTACCTTCACGAAGAATCAAGATTGAAAATTGTTCACAGAGATATTAAAGCTACCAATGTGTTACTTGATAAAAGTCTGAATGCCAAAATCTCAGACTTTGGGTTGGCTAAGCTTGATGAAGAGGAGAATACCCATATCAGCACAAGAATCGCTGGCACAATAGGTTATATGGCTCCAGAATATGCAACAAGGGGTTATTTGACCGATAAAGCTGATGTTTATAGCTTTGGAGTCGTGGCTTTAGAAATTGTTAGTGGAAAAAGCAATACAAATTACAGGCCAAAAGAAGAGTTCGTGTATCTTCTTGACTGGGTAACTAGTGTCATTTTAAGTTCTTTCCCCCCATTTTATTTTTTAAAAGATAGTTCTTCCCCATTTGAGATTTTTCAAATCATAATTTTTTTCTACCTACTTGGAAGGCTATCCTTCTACAAGAAGAAGGAAACCTGCTGGAACTTGTTGATCCAAATCTTGGCTCAGAATACTCAAAAGAAGAAGTCATGA 2829 39.8 MDFKIFHVYVLVCWFLLFNCFSRFGSYAQPLPQQEVRALQAISAELKNTNWNVDQNSCNNNGGNGFNNQVIDGDRIIREVNCTCSIDSCSVTSIRLKTLDLVGVLPAAFANLTQLRILDLARNFINGSIPREFGRLSQLVTLSMLGNRLSGQVPAEIGDISSLEELVLEHNQLGGNLPQSLGSLSHLKKLFLSANNFIGPIPESYGNLKNLTDFRIDGNDISGKLPEFIRNWAELVRLDIQGTSMENPIPHAISELQKLAELRITDLKGPSISFPNLTQWTSLETLIFRNCGIEGQIPQYFELFRRLRTLDLSFNRLNGTVPEPVLRNLSQRDVHSLFLNDNLLTGQLPKRTLPEGRKGNMDLSYNIFTDSPDLPPCHENKVNLLSGYSNSSNESVTWCLRKDLPCPREPRTRSLFINCGGEMMKFEGHDYERDTTMDSASKFSFSDRWGYSSTGIFTDNETFAQYLSSNEFTSSIYRTARGAPVSLKYYGFCLQSGSYNVKLHFAETVFTTGQTFSSLGKRIFDISIQRKLVEKDFNIMERAGGAGQSYVLEVRNVIISGSTLEIHLYWAGKGTNAIPYKGVFGPLISGITVTSNDEGQGLSAGAIAGIVMGSFVFVVLVLVILRRKGYLGGKATEDKELQDLKLQTGYFSLRQIKAATKNFDLACKIGEGGFGPVYKGVLPDGTSIAVKQLSSKSRQGNREFITEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYLENNNLARALFGSKEHSLHLDWAVRMKICLGVAKGLAYLHEESRLKIVHRDIKATNVLLDKSLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYATRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWVTSVILSSFPPFYFLKDSSSPFEIFQIIIFFYLLGRLSFYKKKETCWNLLIQILAQNTQKKKS 942
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37892077 37901975 - Sed0007429.3 Sed04g2480 711083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2480 942 Gene3D Ribonuclease Inhibitor 202 268 IPR032675 -
Sed04g2480 942 Gene3D Ribonuclease Inhibitor 269 396 IPR032675 -
Sed04g2480 942 FunFam Lectin-domain containing receptor kinase A4.3 739 886 - -
Sed04g2480 942 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 632 738 - -
Sed04g2480 942 ProSiteProfiles Protein kinase domain profile. 663 942 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g2480 942 SUPERFAMILY Protein kinase-like (PK-like) 649 893 IPR011009 -
Sed04g2480 942 Gene3D - 413 598 - -
Sed04g2480 942 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 178 270 - -
Sed04g2480 942 Gene3D Transferase(Phosphotransferase) domain 1 739 939 - -
Sed04g2480 942 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 10 880 IPR051824 -
Sed04g2480 942 Gene3D Phosphorylase Kinase; domain 1 631 738 - -
Sed04g2480 942 Gene3D Ribonuclease Inhibitor 34 201 IPR032675 -
Sed04g2480 942 Pfam Protein tyrosine and serine/threonine kinase 665 872 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g2480 942 CDD STKc_IRAK 669 880 - -
Sed04g2480 942 SMART serkin_6 663 940 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g2480 942 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 412 596 - -
Sed04g2480 942 Pfam Malectin domain 415 591 IPR021720 -
Sed04g2480 942 SUPERFAMILY L domain-like 77 349 - -
Sed04g2480 942 Pfam Leucine Rich Repeat 162 184 IPR001611 GO:0005515(InterPro)
Sed04g2480 942 Pfam Leucine Rich Repeat 186 208 IPR001611 GO:0005515(InterPro)
Sed04g2480 942 Pfam Leucine Rich Repeat 306 324 IPR001611 GO:0005515(InterPro)
Sed04g2480 942 Pfam Leucine rich repeat 92 149 IPR001611 GO:0005515(InterPro)
Sed04g2480 942 ProSitePatterns Serine/Threonine protein kinases active-site signature. 785 797 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g2480 942 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 86 177 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2480 Sed-Chr4:37892077 Sed04g2482 Sed-Chr4:37892077 0.00E+00 dispersed
Sed04g2479 Sed-Chr4:37892077 Sed04g2480 Sed-Chr4:37892077 0.00E+00 tandem
Sed04g2480 Sed-Chr4:37892077 Sed04g2481 Sed-Chr4:37892077 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79042 PF07714 PK_Tyr_Ser-Thr 1.00E-47 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2480 - - - 0.0