Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2482 ATGTACAATTACTTCATATGGAACCAATTAAACAGAGATCTCGCTCGCAATTTTATAAATGGATCAATCCCTAGGGAGTTTGGTCGCCTTTCTCAGCTTGTTACTCTTTCCATGCTGGGAAACCGACTCAGTGGTCAAGTTCCTGCAGAAATTGGTGATATTTCTTCACTTGAAGAACTCGTCTTAGAACACAATCAGCTCGGAGGAAATCTTCCCCAAAGCCTCGGCAGTCTAAGCCACTTGAAAAAACTATTTCTTTCTGCAAATAATTTCATAGGCCCAATTCCAGAATCTTATGGAAACTTGAAGAACTTGACTGATTTTCGAATAGATGGAAATGATATATCAGGAAAGCTTCCCGAATTTATCAGAAATTGGGCTGAACTTGTGAGATTGGATATTCAAGGAACATCTATGGAGAACCCCATTCCCCATGCCATATCCGAGTTACAAAAATTAGCTGAACTGAGGATAACTGATTTGAAGGGACCATCGATTAGTTTCCCCAATTTGACTCAATGGACATCTTTAGAAACATTGATCTTCAGAAATTGCGGAATTGAGGGTCAAATCCCTCAATATTTTGAACTTTTTCGTAGATTAAGAACTTTGGATTTAAGCTTCAACAGATTAAATGGTACAGTTCCAGAGCCAGTATTACGGAATCTATCGCAGCGGGATGTTCATTCTTTGTTTCTAAATGACAACTTGCTGACTGGTCAACTGCCAAAACGGACCTTGCCTGAAGGAAGAAAAGGCAACATGGATTTATCTTACAACATATTTACAGATTCACCTGATCTTCCCCCTTGTCATGAAAATAAAGTGAACTTGCTTTCTGGTTATTCAAATTCAAGTAATGAAAGTGTTACTTGGTGCCTGAGGAAGGATCTCCCTTGCCCTAGAGAACCTCGAACTCGTTCGTTGTTCATTAACTGTGGAGGAGAGATGATGAAGTTTGAAGGTCATGACTACGAAAGGGATACAACTATGGATAGTGCTTCCAAATTCTCTTTTTCAGATAGATGGGGCTACAGTAGTACTGGCATTTTCACGGATAATGAGACTTTTGCTCAATATTTAAGTAGCAATGAATTTACTTCGAGCATCTATAGGACGGCTCGGGGTGCACCTGTTTCGCTTAAGTACTACGGATTTTGCTTGCAAAGTGGAAGTTACAATGTGAAGCTTCACTTTGCTGAAACAGTGTTTACTACAGGCCAAACATTCAGTAGCTTGGGGAAGCGTATTTTTGACATCTCAATCCAAAGAAAATTGGTTGAAAAAGATTTCAACATAATGGAGAGAGCCGGAGGTGCTGGCCAGAGCTATGTTTTGGAAGTGCGTAATGTTATAATAAGTGGCAGCACTCTTGAGATCCACTTATACTGGGCTGGGAAAGGGACAAATGCCATTCCATACAAAGGAGTGTTTGGACCTCTTATATCTGGAATCACAGTTACATCAAATGATGAGGGACAAGGGCTATCTGCTGGAGCTATTGCTGGCATTGTTATGGGTAGTTTTGTGTTCGTTGTTTTAGTATTGGTTATTCTTCGAAGGAAGGGCTACTTAGGTGGGAAGGCAACTGAAGACAAAGAACTTCAAGACCTAAAGTTACAAACAGGTTATTTCAGTCTAAGACAAATCAAAGCAGCCACCAAAAATTTCGACTTGGCATGTAAGATAGGCGAGGGAGGTTTTGGTCCTGTCTACAAGGGAGTACTGCCAGATGGCACTTCAATTGCTGTTAAGCAACTGTCGTCTAAATCAAGACAAGGAAATCGTGAATTCATCACTGAAATTGGCATGATATCTGCATTACAACATCCAAATCTTGTTAAGCTTTATGGTTGTTGTATTGAAGGAAACCAGTTGTTGCTTATTTATGAGTATCTTGAGAATAATAATCTTGCTCGTGCACTTTTTGGTTCCAAGGAGCACTCGCTACATTTGGATTGGGCAGTAAGAATGAAGATATGCTTGGGAGTAGCAAAAGGGTTGGCTTACCTTCACGAAGAATCAAGATTGAAAATTGTTCACAGAGATATTAAAGCTACCAATGTGTTACTTGATAAAAGTCTGAATGCCAAAATCTCAGACTTTGGGTTGGCTAAGCTTGATGAAGAGGAGAATACCCATATCAGCACAAGAATCGCTGGCACAATAGGTTATATGGCTCCAGAATATGCAACAAGGGGTTATTTGACCGATAAAGCTGATGTTTATAGCTTTGGAGTCGTGGCTTTAGAAATTGTTAGTGGAAAAAGCAATACAAATTACAGGCCAAAAGAAGAGTTCGTGTATCTTCTTGACTGGGCTATCCTTCTACAAGAAGAAGGAAACCTGCTGGAACTTGTTGATCCAAATCTTGGCTCAGAATACTCAAAAGAAGAAGTCATGAGGATGCTTAATATCGCTCTCTTGTGCACGAACCAGTCGCCGAGCCTTAGGCCATCGATGTCTTCCGTGGTTAGCATGCTTGAAGGTAAGATTCCAATCGAAGCATCAAAGATCAAACGCAATGTAGCTGATAGAGATGCAAGGTTCAAAGCCTTTGAGAAGTTGTCACAAGACAGCCTAACAAGCATTTCGACATCATCACAAGGCATTCAAATGCAAAGAAGCATGTTAGTTGATGGGCCATGGATTGACTCATCCTCTACTTCTACACAAAACATAGACGAAACTCGAGAGTATTCTTCAACCAGAAGTCTCCTTCTGGATTGA 2730 40.37 MYNYFIWNQLNRDLARNFINGSIPREFGRLSQLVTLSMLGNRLSGQVPAEIGDISSLEELVLEHNQLGGNLPQSLGSLSHLKKLFLSANNFIGPIPESYGNLKNLTDFRIDGNDISGKLPEFIRNWAELVRLDIQGTSMENPIPHAISELQKLAELRITDLKGPSISFPNLTQWTSLETLIFRNCGIEGQIPQYFELFRRLRTLDLSFNRLNGTVPEPVLRNLSQRDVHSLFLNDNLLTGQLPKRTLPEGRKGNMDLSYNIFTDSPDLPPCHENKVNLLSGYSNSSNESVTWCLRKDLPCPREPRTRSLFINCGGEMMKFEGHDYERDTTMDSASKFSFSDRWGYSSTGIFTDNETFAQYLSSNEFTSSIYRTARGAPVSLKYYGFCLQSGSYNVKLHFAETVFTTGQTFSSLGKRIFDISIQRKLVEKDFNIMERAGGAGQSYVLEVRNVIISGSTLEIHLYWAGKGTNAIPYKGVFGPLISGITVTSNDEGQGLSAGAIAGIVMGSFVFVVLVLVILRRKGYLGGKATEDKELQDLKLQTGYFSLRQIKAATKNFDLACKIGEGGFGPVYKGVLPDGTSIAVKQLSSKSRQGNREFITEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYLENNNLARALFGSKEHSLHLDWAVRMKICLGVAKGLAYLHEESRLKIVHRDIKATNVLLDKSLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYATRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWAILLQEEGNLLELVDPNLGSEYSKEEVMRMLNIALLCTNQSPSLRPSMSSVVSMLEGKIPIEASKIKRNVADRDARFKAFEKLSQDSLTSISTSSQGIQMQRSMLVDGPWIDSSSTSTQNIDETREYSSTRSLLLD 909
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37892077 37900816 - Sed0007429.5 Sed04g2482 711085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2482 909 FunFam Leucine-rich repeat receptor protein kinase EMS1 6 92 - -
Sed04g2482 909 Gene3D Phosphorylase Kinase; domain 1 525 632 - -
Sed04g2482 909 Gene3D Ribonuclease Inhibitor 162 270 IPR032675 -
Sed04g2482 909 SMART serkin_6 557 828 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g2482 909 Pfam Leucine Rich Repeat 56 78 IPR001611 GO:0005515(InterPro)
Sed04g2482 909 Pfam Leucine Rich Repeat 80 102 IPR001611 GO:0005515(InterPro)
Sed04g2482 909 Pfam Leucine Rich Repeat 200 218 IPR001611 GO:0005515(InterPro)
Sed04g2482 909 Gene3D Ribonuclease Inhibitor 3 161 IPR032675 -
Sed04g2482 909 Gene3D Transferase(Phosphotransferase) domain 1 633 853 - -
Sed04g2482 909 FunFam Putative LRR receptor-like serine/threonine-protein kinase 633 840 - -
Sed04g2482 909 CDD STKc_IRAK 563 830 - -
Sed04g2482 909 ProSiteProfiles Protein kinase domain profile. 557 832 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g2482 909 Pfam Malectin domain 309 485 IPR021720 -
Sed04g2482 909 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 526 632 - -
Sed04g2482 909 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 12 854 IPR051824 -
Sed04g2482 909 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 306 490 - -
Sed04g2482 909 ProSitePatterns Serine/Threonine protein kinases active-site signature. 679 691 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g2482 909 SUPERFAMILY Protein kinase-like (PK-like) 541 831 IPR011009 -
Sed04g2482 909 SUPERFAMILY L domain-like 13 270 - -
Sed04g2482 909 Gene3D - 307 492 - -
Sed04g2482 909 Pfam Protein tyrosine and serine/threonine kinase 559 828 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2478 Sed-Chr4:37892077 Sed04g2482 Sed-Chr4:37892077 0.00E+00 dispersed
Sed04g2480 Sed-Chr4:37892077 Sed04g2482 Sed-Chr4:37892077 0.00E+00 dispersed
Sed04g2482 Sed-Chr4:37892077 Sed05g2497 Sed-Chr5:37030116 1.8e-310 dispersed
Sed04g2481 Sed-Chr4:37892077 Sed04g2482 Sed-Chr4:37892077 0.00E+00 tandem
Sed04g2482 Sed-Chr4:37892077 Sed04g2483 Sed-Chr4:37892077 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79044 PF07714 PK_Tyr_Ser-Thr 2.20E-49 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2482 - - - 0.0