Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2485 ATGGAATATTTGAAGAGTGTTCAAGTTCAAGTTCATGTTCTTGTCTTCTGGTTTATGCTTCTCATCTGCTTGTTTGGATTTGGATGTGATGCCCAACCTCTGCCTCAACAAGAAGTGAGGGCCCTTGAAGCAATATCAGAGGAGCTGAAGAATTTAAATTGGAAGGTGCACCAGAATTCTTGCATTAATGGCGACGGGTTTTCTAATATATTTATCGATAATTCCAATATCAGAGAGGTTAATTGCACTTGTAATTCAACTATTTGCAACATCCTAACCATTCGGCTGAAGGGTCTCAACCTGGTTGGAACACTACCTGCGGCATTTGCAAATCTTACTCGATTGAACTACTTGGATCTTAGTCGCAACTTCATAAATGGATCAATTCCTAAGGAGTTTGGTCGCATTCCTCTTGTTACTTTTAACATGGTGGGAAACCGGCTCAATGGACAGATTCCTCAAGAAATTGGTGATATTGGTTCCCTTGAAGAACTGAACCTGGAAGAGAATGAACTGGAAGGAAGTCTTCCGGAAAGGCTGGGCAAACTGAGTCACTTGCGAAGATTACTTCTTTCTTCGAATAATTTCACAGGCTCCATTCCACAATCTTTTGGAAACCTAAGGAACATGACAGATTTTTGGATAGATGGAAATGATTTATCTGGAAAGCTTCCTGAATTTATTGGCAATTGGACTAAACTTTATAAACTTCATATTCAAGGAACTTCCATGGAGAATCCAATTCCTCGTGCCATATCTGGATTGGAAAACTTAACTGAACTGATGATAACTGATTTGAAGGGACCAACCACAAGTTTTCCCAATTTGACTCGATTGGAAAATTTGCAAATACTGGTCCTAAGAAATTGCCTAATCGAGGATAGTATCCCTTCATATCTTGGACAGAATAATGTACGTCTAAGAACTTTAGATCTAAGCTTCAACAGATTGAGTGGTCCAATTCCAGAGACATTACAAAATCTCCTCACATTCGTAAAATTTTTCATGTTTCTTAATAACAACTCATTAAGCGGTCAAGTACCGAGCTGGATTGTGGACAGCCAAAAGTATATAGATTTATCTTACAACAATTTTACAGGGCCTCCTGTTTCTAGTTGTCCACAGTCTAACAATGTGAACTTGGTTTCCAGTTATTCAACGGTCACGAATAATACTGATGCTTGGTGCCTAAAGAAGGATCTCCCTTGCCCAAGAGAAGCTCGATATGATTCATTGTTCATAAATTGTGGAGGAGAAAGAAGGGAGGTTGATGGTAATGAATACGAAAGCGACGAGACATTGGGTGGGAAAGCCAATTTCTTTGCTCCCTCAGAAAGATGGGGTTACAGCAGCACTGGTTCTTTCTTGATAAATAATGTTGAGGGTCCTCCTTACAAAGCTATCAGTAGCAATGTTAATTCAGGCCTCTATGCCACAGCTCGACTCGCCCCTGTTTCGCTCAAGTACTATGGATTTTGCTTGCACACTGGAAGCTACAATGTCAAGCTTCACTTTGCTGAAATTATGTTTACTGCTAACCAAACCTTTACTAGCCTTGGAAGGCGCTTTTTTGATGTCTCCATTCAGGGAAAGTTGGTTAGAAAAAACTTCAACATAATGGAGGAAGCTGGAGGTGTGGGTAAATACTTTGTTCTGGAAGAGCCAAATATTCAAGTAACTAGCAACACACTTGAAATCCATTTGTATTGGGCTGGTAAAGGAACAACTGCCATTCCAGTGAAAGGGGTGTATGGACCTCTAATATCTGCAATTACAGTCACACCCAACTTTGACATGAAAACAAGAAAGCTATCAGCAGGAGCTATTGCTTGCATTGTTGTTGGTATTTCTGTGATGGTTGCGATGGTTTTGTTGGCTGTTCTTCGAAGGAAAGGTTACTTAGGTGGGAAGGAAACCGAAGACAGTGAAGTTCGGTCTCTAAGGTTACAGACAGGTTATTTCAGCTTAAGACAAATAAAAGCAGCAACCAACAACTTTGACTCAGCACATAAGATAGGCGAGGGAGGTTTTGGTCCTGTCTACAAGGGAGTACTCTCAGATGGCACTTTAATTGCGGTAAAACAGCTATCTTCTAAATCAAGTCAAGGGAACCGTGAATTCATCACAGAAATCGGCATGATATCTGCATTACAACATCCAAATCTTGTTAAGCTTTATGGTTGTTGTGTTGAAGGAAACCAGTTGTTGCTTATTTACGAGTATCTAGAGAACAACTGCCTTGCACGTGCACTTTTTGGGCCTGAGAAACACTTACTACATTTGGAGTGGGCTGTAAGAATGAAGATATGCTTGGGAATAGCAACAGGGTTGGCTTACCTTCATGAAGAATCTAGATTGAAAATTATTCATAGGGATATAAAAGCTACCAATGTTCTGCTTGATAGAAATTTGAATGCCAAGATCTCAGACTTTGGGTTGGCTAAGCTTTATGAAGAGGAGAATACTCATATCAGCACAAGAATTGCAGGCACCATGTCTCTCTCTCTCTCTCTCTCTAGCTCAATTTTTGTAAAATATTTTGGCATTCAACTACCTTGTCTAACTTTTGACTTGTTTTCAGAGGTTACATGGCTCCTGAATATGCAACGAGAGGTTATTTGA 2622 40.01 MEYLKSVQVQVHVLVFWFMLLICLFGFGCDAQPLPQQEVRALEAISEELKNLNWKVHQNSCINGDGFSNIFIDNSNIREVNCTCNSTICNILTIRLKGLNLVGTLPAAFANLTRLNYLDLSRNFINGSIPKEFGRIPLVTFNMVGNRLNGQIPQEIGDIGSLEELNLEENELEGSLPERLGKLSHLRRLLLSSNNFTGSIPQSFGNLRNMTDFWIDGNDLSGKLPEFIGNWTKLYKLHIQGTSMENPIPRAISGLENLTELMITDLKGPTTSFPNLTRLENLQILVLRNCLIEDSIPSYLGQNNVRLRTLDLSFNRLSGPIPETLQNLLTFVKFFMFLNNNSLSGQVPSWIVDSQKYIDLSYNNFTGPPVSSCPQSNNVNLVSSYSTVTNNTDAWCLKKDLPCPREARYDSLFINCGGERREVDGNEYESDETLGGKANFFAPSERWGYSSTGSFLINNVEGPPYKAISSNVNSGLYATARLAPVSLKYYGFCLHTGSYNVKLHFAEIMFTANQTFTSLGRRFFDVSIQGKLVRKNFNIMEEAGGVGKYFVLEEPNIQVTSNTLEIHLYWAGKGTTAIPVKGVYGPLISAITVTPNFDMKTRKLSAGAIACIVVGISVMVAMVLLAVLRRKGYLGGKETEDSEVRSLRLQTGYFSLRQIKAATNNFDSAHKIGEGGFGPVYKGVLSDGTLIAVKQLSSKSSQGNREFITEIGMISALQHPNLVKLYGCCVEGNQLLLIYEYLENNCLARALFGPEKHLLHLEWAVRMKICLGIATGLAYLHEESRLKIIHRDIKATNVLLDRNLNAKISDFGLAKLYEEENTHISTRIAGTMSLSLSLSSSIFVKYFGIQLPCLTFDLFSEVTWLLNMQREVI 873
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37906030 37919082 - Sed0000305.2 Sed04g2485 711088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2485 873 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
Sed04g2485 873 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 86 176 - -
Sed04g2485 873 Pfam Leucine Rich Repeat 306 328 IPR001611 GO:0005515(InterPro)
Sed04g2485 873 Pfam Leucine Rich Repeat 161 183 IPR001611 GO:0005515(InterPro)
Sed04g2485 873 Pfam Leucine Rich Repeat 115 135 IPR001611 GO:0005515(InterPro)
Sed04g2485 873 Pfam Leucine Rich Repeat 185 207 IPR001611 GO:0005515(InterPro)
Sed04g2485 873 SUPERFAMILY L domain-like 69 330 - -
Sed04g2485 873 FunFam Os07g0541700 protein 742 831 - -
Sed04g2485 873 Gene3D Phosphorylase Kinase; domain 1 633 741 - -
Sed04g2485 873 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 635 741 - -
Sed04g2485 873 Gene3D Ribonuclease Inhibitor 192 386 IPR032675 -
Sed04g2485 873 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 409 596 - -
Sed04g2485 873 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 833 IPR051824 -
Sed04g2485 873 Pfam Protein tyrosine and serine/threonine kinase 669 823 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g2485 873 Gene3D Ribonuclease Inhibitor 36 191 IPR032675 -
Sed04g2485 873 ProSitePatterns Serine/Threonine protein kinases active-site signature. 788 800 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g2485 873 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 177 269 - -
Sed04g2485 873 ProSiteProfiles Protein kinase domain profile. 666 873 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g2485 873 Gene3D - 411 596 - -
Sed04g2485 873 Pfam Malectin domain 412 591 IPR021720 -
Sed04g2485 873 SUPERFAMILY Protein kinase-like (PK-like) 645 832 IPR011009 -
Sed04g2485 873 SMART serkin_6 666 873 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g2485 873 Gene3D Transferase(Phosphotransferase) domain 1 742 835 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2485 Sed-Chr4:37906030 Sed05g2497 Sed-Chr5:37030116 2.60E-290 dispersed
Sed04g2484 Sed-Chr4:37906030 Sed04g2485 Sed-Chr4:37906030 0.00E+00 tandem
Sed04g2485 Sed-Chr4:37906030 Sed04g2486 Sed-Chr4:37923361 8.20E-143 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79047 PF11721 Malectin 1.40E-39 CL0202 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2485 - - - 0.0