Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2486 ATGGGTTTGCGGTATGTGGGGGACACATTGGGAGGGATATCCTGGAATTTCAGTTCAAGTGATCCATGTAGCGATGCAGTCAGTTCAAGTGATATGTATGGCAATTCCCGTGAAAGAACAGTCGGATGTAATTGCTCATATGAAAATGCTACCGTCTGCCACGTCACCAGTTTAATTCTCACGTCTCTGAGTTTGGAGGGTACACTTCCATCTGATCTCTCCAAGTTGCCTTATCTGAAGTATCTTAATCTCTCTCGAAACTGCCTTAGCGGCCCCATTCCTCCACAATGGGGCTCCACCAAGCTTGTCGCCATTTTTCTGTTGGGAAATCAACTGAGGGGTTCTGTTCCAGAGGAGATTGGAAACATCACTACTCTTCAAGCATTGGTCCTAGAAAGCAACCAACTATCAGGAAAATTGCCTTCTTCACTTGGAAATTTGCGGAGCTTGAGATTGTTAAATCTTGGCTCTAACAACTTCACGGGGGACTTACCCGCTTCTTTCGGAATGCTAACCTCTTTGGCAGGCTTCAGTATCAGAGACAATAATTTTGTAGGACAGATACCTACCTTCATTCTAAATTGGACAAATATTGTTAGCATACAAATTCAAGCAAGTGGGTTGAGTGGGCCTATTCCTTCTGAAATTGGGCTTTTGAAGAACTTAATCGTCCTGATGATAAGTGACTTGAATGGAGCTTCATCACCCTTTCCGTCGCTTAATCATTTGACTAATTTGAGAACTTTAATATTGAGAAGTTGCAATATAGCAGGAGTGCTGCCTGATGATTTTGGTGGGATGGTAAATTTGGAACAACTAGACCTCAGTTTCAACAAAATAAGTGGGCAAATTCCTCCTAGTTTACGCGGTCTTGCAAGGATGGAGACATTACTTTTGACTGGAAACTTGCTGAATGGATCAGTGCCGGATTGGATGCTCGATGAAGTAAAATCCATTGATCTTTCTTATAATAAATTTACTTCACTCCCATCGGATACGGGCTGTCAATATCGAAATCTAAACCTATTTGCAAGCTCTTCAGTGGACAATAATTTTAACCTTGTATCTTGTTTGGCGAACCGTACTTGTGCTCGAGTTGTGTCCCATCTCCATATAAATTGTGGTGGGAAGGAAGAAACCATTGATGGTGTTGTCTTTGAAGGAGATGAAGATAGAGTCAAACCATCGCAATTTCTTTTAAGCAAAACAAATTGGGCACTTAGCAATTCTGGCAATTTTATGAATGTTGATAGTAACATTAGCCATTATGTTGTTGGGAATTCATCTGCACTGTCTATGATAAATTCCAAACTGTATGAGAGTGCTCGATTGTCTCCACTGTCTCTTACATACTATGCGTATTGCATGGCAAATGGAAACTACACGATAAGCCTTCATTTTGCAGAAATAATGTTTTCCAATAACAAAAGTTATAGCAGCCTTGGAAGACGCATTTTTGATGTTTATGTGCAGGGAAGGCTGGTGCTGAAGGATTTTAATATCGTAGATGCTGCAGGTGGTATAGGTATAGCTGTCATAAAAACAATTCATGTTGCCATTACCAGTGGTACTCTGGAGATACGATTTTACTGGGCTGGGAAGGGCACACTTTTTATCCCTGTACCGGGAGTATATGGTCCTCTGATTTCAGCCATTTCAATAGAACCTGCAAACACTCCATCAGAAGGTCGAAGTACCTTACCTTTAGGTGCAATTGTTGGAATTATTTTAGCTGGAGTGGCCTTCATTATGCTTTTGGCTCTCCGAATTTCATGGTGGATAGGCTATTTTAGAAGGAAAGCAGCACATCAACAAGATTTGAAGGGTCAAGATCTACTAATTGGTTCATTTACACTGAAGCAAATTAGAACAGCAACAAATAACTTTGATGCTTCCAATAAGATAGGAGAAGGTGGCTTTGGACCTGTTTATAAGGGTATTCTCTCCGATGGTACCGTGATTGCAGTGAAGCAACTTTCTGCAAAGTCAAAACAAGGAAACCGTGAATTTGTGAATGAGATGGGCTTGATATCTTCGGTGAAGCACCCAAATCTCGTTAAGCTTTATGGATGTTGTACGGAAGGAGATCAGCTTTTGCTAGTATATGAATATATGGAAAATAATTGCCTTGCTCAAGCCCTCTTTGGACCTCGAGGACGTCAATTAAGATTGGATTGGGCAACGAGGCAAAAGATTTGTATTGGTATAGCCAAAGGTTTGGCTTTTCTTCATGAGGAGTCGAGATTAAAGATTGTTCACCGAGATATCAAAAGTACTAATGTATTGTTAGATAAAAATCTCAACCCGAAGATATCTGACTTTGGCTTGGCCAAGCTTGATGAAGAAGACAATACCCACATAAGTACTCGGATCGCTGGAACGTAG 2385 40.88 MGLRYVGDTLGGISWNFSSSDPCSDAVSSSDMYGNSRERTVGCNCSYENATVCHVTSLILTSLSLEGTLPSDLSKLPYLKYLNLSRNCLSGPIPPQWGSTKLVAIFLLGNQLRGSVPEEIGNITTLQALVLESNQLSGKLPSSLGNLRSLRLLNLGSNNFTGDLPASFGMLTSLAGFSIRDNNFVGQIPTFILNWTNIVSIQIQASGLSGPIPSEIGLLKNLIVLMISDLNGASSPFPSLNHLTNLRTLILRSCNIAGVLPDDFGGMVNLEQLDLSFNKISGQIPPSLRGLARMETLLLTGNLLNGSVPDWMLDEVKSIDLSYNKFTSLPSDTGCQYRNLNLFASSSVDNNFNLVSCLANRTCARVVSHLHINCGGKEETIDGVVFEGDEDRVKPSQFLLSKTNWALSNSGNFMNVDSNISHYVVGNSSALSMINSKLYESARLSPLSLTYYAYCMANGNYTISLHFAEIMFSNNKSYSSLGRRIFDVYVQGRLVLKDFNIVDAAGGIGIAVIKTIHVAITSGTLEIRFYWAGKGTLFIPVPGVYGPLISAISIEPANTPSEGRSTLPLGAIVGIILAGVAFIMLLALRISWWIGYFRRKAAHQQDLKGQDLLIGSFTLKQIRTATNNFDASNKIGEGGFGPVYKGILSDGTVIAVKQLSAKSKQGNREFVNEMGLISSVKHPNLVKLYGCCTEGDQLLLVYEYMENNCLAQALFGPRGRQLRLDWATRQKICIGIAKGLAFLHEESRLKIVHRDIKSTNVLLDKNLNPKISDFGLAKLDEEDNTHISTRIAGT 794
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37923361 37943723 + Sed0019512.3 Sed04g2486 711089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2486 794 Gene3D Transferase(Phosphotransferase) domain 1 705 794 - -
Sed04g2486 794 Pfam Leucine rich repeat 244 304 IPR001611 GO:0005515(InterPro)
Sed04g2486 794 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 598 704 - -
Sed04g2486 794 Gene3D Ribonuclease Inhibitor 11 164 IPR032675 -
Sed04g2486 794 Gene3D Ribonuclease Inhibitor 165 232 IPR032675 -
Sed04g2486 794 Gene3D Phosphorylase Kinase; domain 1 595 704 - -
Sed04g2486 794 Gene3D - 368 557 - -
Sed04g2486 794 SUPERFAMILY Protein kinase-like (PK-like) 614 794 IPR011009 -
Sed04g2486 794 Pfam Protein tyrosine and serine/threonine kinase 632 785 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g2486 794 Gene3D Ribonuclease Inhibitor 233 365 IPR032675 -
Sed04g2486 794 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 367 557 - -
Sed04g2486 794 Pfam Leucine Rich Repeat 126 147 IPR001611 GO:0005515(InterPro)
Sed04g2486 794 Pfam Leucine Rich Repeat 79 98 IPR001611 GO:0005515(InterPro)
Sed04g2486 794 Pfam Leucine Rich Repeat 149 170 IPR001611 GO:0005515(InterPro)
Sed04g2486 794 ProSiteProfiles Leucine-rich repeat profile. 269 292 IPR001611 GO:0005515(InterPro)
Sed04g2486 794 SUPERFAMILY L domain-like 43 355 - -
Sed04g2486 794 FunFam Leucine-rich repeat receptor protein kinase EMS1 97 191 - -
Sed04g2486 794 ProSitePatterns Serine/Threonine protein kinases active-site signature. 751 763 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g2486 794 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 15 794 IPR051824 -
Sed04g2486 794 FunFam Os07g0541700 protein 705 794 - -
Sed04g2486 794 ProSiteProfiles Protein kinase domain profile. 629 794 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g2486 794 Pfam Malectin domain 370 552 IPR021720 -
Sed04g2486 794 SMART LRR_typ_2 243 266 IPR003591 -
Sed04g2486 794 SMART LRR_typ_2 76 100 IPR003591 -
Sed04g2486 794 SMART LRR_typ_2 147 170 IPR003591 -
Sed04g2486 794 SMART LRR_typ_2 267 291 IPR003591 -
Sed04g2486 794 SMART LRR_typ_2 313 336 IPR003591 -
Sed04g2486 794 SMART serkin_6 629 789 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g2486 794 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 237 329 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2486 Sed-Chr4:37923361 Sed04g2488 Sed-Chr4:37926495 0.00E+00 dispersed
Sed04g2485 Sed-Chr4:37906030 Sed04g2486 Sed-Chr4:37923361 8.20E-143 tandem
Sed04g2486 Sed-Chr4:37923361 Sed04g2487 Sed-Chr4:37926495 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79048 PF11721 Malectin 2.80E-42 CL0202 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2486 - - - 0.0