Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2488 ATGTGGGCACTGCCTCCAACCCTTGTAGTTGCTTCCTTTTTTCTTTTGTGCTCTCCTACTGGCACTGCTGCTCAAGTTTCAAGATTGCCTCAACAAGAAGAGATGGGTTTGCGGTATGTGGGGGACACATTGGGAGGGATATCCTGGAATTTCAGTTCAAGTGATCCATGTAGCGATGCAGTCAGTTCAAGTGATATGTATGGCAATTCCCGTGAAAGAACAGTCGGATGTAATTGCTCATATGAAAATGCTACCGTCTGCCACGTCACCAGTTTAATTCTCACGTCTCTGAGTTTGGAGGGTACACTTCCATCTGATCTCTCCAAGTTGCCTTATCTGAAGTATCTTAATCTCTCTCGAAACTGCCTTAGCGGCCCCATTCCTCCACAATGGGGCTCCACCAAGCTTGTCGCCATTTTTCTGTTGGGAAATCAACTGAGGGGTTCTGTTCCAGAGGAGATTGGAAACATCACTACTCTTCAAGCATTGGTCCTAGAAAGCAACCAACTATCAGGAAAATTGCCTTCTTCACTTGGAAATTTGCGGAGCTTGAGATTGTTAAATCTTGGCTCTAACAACTTCACGGGGGACTTACCCGCTTCTTTCGGAATGCTAACCTCTTTGGCAGGCTTCAGTATCAGAGACAATAATTTTGTAGGACAGATACCTACCTTCATTCTAAATTGGACAAATATTGTTAGCATACAAATTCAAGCAAGTGGGTTGAGTGGGCCTATTCCTTCTGAAATTGGGCTTTTGAAGAACTTAATCGTCCTGATGATAAGTGACTTGAATGGAGCTTCATCACCCTTTCCGTCGCTTAATCATTTGACTAATTTGAGAACTTTAATATTGAGAAGTTGCAATATAGCAGGAGTGCTGCCTGATGATTTTGGTGGGATGGTAAATTTGGAACAACTAGACCTCAGTTTCAACAAAATAAGTGGGCAAATTCCTCCTAGTTTACGCGGTCTTGCAAGGATGGAGACATTACTTTTGACTGGAAACTTGCTGAATGGATCAGTGCCGGATTGGATGCTCGATGAAGTAAAATCCATTGATCTTTCTTATAATAAATTTACTTCACTCCCATCGGATACGGGCTGTCAATATCGAAATCTAAACCTATTTGCAAGCTCTTCAGTGGACAATAATTTTAACCTTGTATCTTGTTTGGCGAACCGTACTTGTGCTCGAGTTGTGTCCCATCTCCATATAAATTGTGGTGGGAAGGAAGAAACCATTGATGGTGTTGTCTTTGAAGGAGATGAAGATAGAGTCAAACCATCGCAATTTCTTTTAAGCAAAACAAATTGGGCACTTAGCAATTCTGGCAATTTTATGAATGTTGATAGTAACATTAGCCATTATGTTGTTGGGAATTCATCTGCACTGTCTATGATAAATTCCAAACTGTATGAGAGTGCTCGATTGTCTCCACTGTCTCTTACATACTATGCGTATTGCATGGCAAATGGAAACTACACGATAAGCCTTCATTTTGCAGAAATAATGTTTTCCAATAACAAAAGTTATAGCAGCCTTGGAAGACGCATTTTTGATGTTTATGTGCAGGGAAGGCTGGTGCTGAAGGATTTTAATATCGTAGATGCTGCAGGTGGTATAGGTATAGCTGTCATAAAAACAATTCATGTTGCCATTACCAGTGGTACTCTGGAGATACGATTTTACTGGGCTGGGAAGGGCACACTTTTTATCCCTGTACCGGGAGTATATGGTCCTCTGATTTCAGCCATTTCAATAGAACCTGCAAACACTCCATCAGAAGGTCGAAGTACCTTACCTTTAGGTGCAATTGTTGGAATTATTTTAGCTGGAGTGGCCTTCATTATGCTTTTGGCTCTCCGAATTTCATGGTGGATAGGCTATTTTAGAAGGAAAGCAGCACATCAACAAGATTTGAAGGGTCAAGATCTACTAATTGGTTCATTTACACTGAAGCAAATTAGAACAGCAACAAATAACTTTGATGCTTCCAATAAGATAGGAGAAGGTGGCTTTGGACCTGTTTATAAGGGTATTCTCTCCGATGGTACCGTGATTGCAGTGAAGCAACTTTCTGCAAAGTCAAAACAAGGAAACCGTGAATTTGTGAATGAGATGGGCTTGATATCTTCGGTGAAGCACCCAAATCTCGTTAAGCTTTATGGATGTTGTACGGAAGGAGATCAGCTTTTGCTAGTATATGAATATATGGAAAATAATTGCCTTGCTCAAGCCCTCTTTGGACCTCGAGGACGTCAATTAAGATTGGATTGGGCAACGAGGCAAAAGATTTGTATTGGTATAGCCAAAGGTTTGGCTTTTCTTCATGAGGAGTCGAGATTAAAGATTGTTCACCGAGATATCAAAAGTACTAATGTATTGTTAGATAAAAATCTCAACCCGAAGATATCTGACTTTGGCTTGGCCAAGCTTGATGAAGAAGACAATACCCACATAAGTACTCGGATCGCTGGAACGTATGGTTATATGGCACCGGAATATGCATCACGAGGCCACTTAACTGATAAAGCAGATGTTTATAGCTTTGGTATCGTGGCATTAGAAATAGTTTGTGGAAGGAGCAACAATTTATATCAGTCAAAGGATAAGTGTCTTTATCTTCTTGATTGGGTAACATGCAGTTTGTTATGTTAA 2661 40.81 MWALPPTLVVASFFLLCSPTGTAAQVSRLPQQEEMGLRYVGDTLGGISWNFSSSDPCSDAVSSSDMYGNSRERTVGCNCSYENATVCHVTSLILTSLSLEGTLPSDLSKLPYLKYLNLSRNCLSGPIPPQWGSTKLVAIFLLGNQLRGSVPEEIGNITTLQALVLESNQLSGKLPSSLGNLRSLRLLNLGSNNFTGDLPASFGMLTSLAGFSIRDNNFVGQIPTFILNWTNIVSIQIQASGLSGPIPSEIGLLKNLIVLMISDLNGASSPFPSLNHLTNLRTLILRSCNIAGVLPDDFGGMVNLEQLDLSFNKISGQIPPSLRGLARMETLLLTGNLLNGSVPDWMLDEVKSIDLSYNKFTSLPSDTGCQYRNLNLFASSSVDNNFNLVSCLANRTCARVVSHLHINCGGKEETIDGVVFEGDEDRVKPSQFLLSKTNWALSNSGNFMNVDSNISHYVVGNSSALSMINSKLYESARLSPLSLTYYAYCMANGNYTISLHFAEIMFSNNKSYSSLGRRIFDVYVQGRLVLKDFNIVDAAGGIGIAVIKTIHVAITSGTLEIRFYWAGKGTLFIPVPGVYGPLISAISIEPANTPSEGRSTLPLGAIVGIILAGVAFIMLLALRISWWIGYFRRKAAHQQDLKGQDLLIGSFTLKQIRTATNNFDASNKIGEGGFGPVYKGILSDGTVIAVKQLSAKSKQGNREFVNEMGLISSVKHPNLVKLYGCCTEGDQLLLVYEYMENNCLAQALFGPRGRQLRLDWATRQKICIGIAKGLAFLHEESRLKIVHRDIKSTNVLLDKNLNPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYASRGHLTDKADVYSFGIVALEIVCGRSNNLYQSKDKCLYLLDWVTCSLLC 886
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37926495 37943723 + Sed0019512.2 Sed04g2488 711091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2488 886 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 271 363 - -
Sed04g2488 886 Pfam Protein kinase domain 665 863 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g2488 886 FunFam Leucine-rich repeat receptor protein kinase EMS1 131 225 - -
Sed04g2488 886 Gene3D Ribonuclease Inhibitor 42 198 IPR032675 -
Sed04g2488 886 Gene3D Ribonuclease Inhibitor 266 399 IPR032675 -
Sed04g2488 886 Gene3D Transferase(Phosphotransferase) domain 1 739 884 - -
Sed04g2488 886 SMART serkin_6 663 880 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g2488 886 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 632 738 - -
Sed04g2488 886 FunFam Lectin-domain containing receptor kinase A4.3 739 884 - -
Sed04g2488 886 SMART LRR_typ_2 277 300 IPR003591 -
Sed04g2488 886 SMART LRR_typ_2 110 134 IPR003591 -
Sed04g2488 886 SMART LRR_typ_2 181 204 IPR003591 -
Sed04g2488 886 SMART LRR_typ_2 347 370 IPR003591 -
Sed04g2488 886 SMART LRR_typ_2 301 325 IPR003591 -
Sed04g2488 886 Gene3D - 402 591 - -
Sed04g2488 886 Pfam Leucine rich repeat 278 338 IPR001611 GO:0005515(InterPro)
Sed04g2488 886 ProSiteProfiles Protein kinase domain profile. 663 886 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g2488 886 Pfam Malectin domain 404 586 IPR021720 -
Sed04g2488 886 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 41 879 IPR051824 -
Sed04g2488 886 Gene3D Ribonuclease Inhibitor 199 265 IPR032675 -
Sed04g2488 886 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 401 591 - -
Sed04g2488 886 SUPERFAMILY Protein kinase-like (PK-like) 648 871 IPR011009 -
Sed04g2488 886 SUPERFAMILY L domain-like 77 389 - -
Sed04g2488 886 Gene3D Phosphorylase Kinase; domain 1 629 738 - -
Sed04g2488 886 ProSiteProfiles Leucine-rich repeat profile. 303 326 IPR001611 GO:0005515(InterPro)
Sed04g2488 886 ProSitePatterns Serine/Threonine protein kinases active-site signature. 785 797 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g2488 886 Pfam Leucine Rich Repeat 113 132 IPR001611 GO:0005515(InterPro)
Sed04g2488 886 Pfam Leucine Rich Repeat 183 204 IPR001611 GO:0005515(InterPro)
Sed04g2488 886 Pfam Leucine Rich Repeat 160 181 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2486 Sed-Chr4:37923361 Sed04g2488 Sed-Chr4:37926495 0.00E+00 dispersed
Sed04g2488 Sed-Chr4:37926495 Sed05g2493 Sed-Chr5:36943206 9.20E-243 dispersed
Sed04g2487 Sed-Chr4:37926495 Sed04g2488 Sed-Chr4:37926495 0.00E+00 tandem
Sed04g2488 Sed-Chr4:37926495 Sed04g2489 Sed-Chr4:37927441 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79050 PF00069 Pkinase 9.10E-47 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2488 - - - 0.0