Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2489 ATGGGTTTGCGGTATGTGGGGGACACATTGGGAGGGATATCCTGGAATTTCAGTTCAAGTGATCCATGTAGCGATGCAGTCAGTTCAAGTGATATGTATGGCAATTCCCGTGAAAGAACAGTCGGATGTAATTGCTCATATGAAAATGCTACCGTCTGCCACGTCACCAGTTTAATTCTCACGTCTCTGAGTTTGGAGGGTACACTTCCATCTGATCTCTCCAAGTTGCCTTATCTGAAGTATCTTAATCTCTCTCGAAACTGCCTTAGCGGCCCCATTCCTCCACAATGGGGCTCCACCAAGCTTGTCGCCATTTTTCTGTTGGGAAATCAACTGAGGGGTTCTGTTCCAGAGGAGATTGGAAACATCACTACTCTTCAAGCATTGGTCCTAGAAAGCAACCAACTATCAGGAAAATTGCCTTCTTCACTTGGAAATTTGCGGAGCTTGAGATTGTTAAATCTTGGCTCTAACAACTTCACGGGGGACTTACCCGCTTCTTTCGGAATGCTAACCTCTTTGGCAGGCTTCAGTATCAGAGACAATAATTTTGTAGGACAGATACCTACCTTCATTCTAAATTGGACAAATATTGTTAGCATACAAATTCAAGCAAGTGGGTTGAGTGGGCCTATTCCTTCTGAAATTGGGCTTTTGAAGAACTTAATCGTCCTGATGATAAGTGACTTGAATGGAGCTTCATCACCCTTTCCGTCGCTTAATCATTTGACTAATTTGAGAACTTTAATATTGAGAAGTTGCAATATAGCAGGAGTGCTGCCTGATGATTTTGGTGGGATGGTAAATTTGGAACAACTAGACCTCAGTTTCAACAAAATAAGTGGGCAAATTCCTCCTAGTTTACGCGGTCTTGCAAGGATGGAGACATTACTTTTGACTGGAAACTTGCTGAATGGATCAGTGCCGGATTGGATGCTCGATGAAGTAAAATCCATTGATCTTTCTTATAATAAATTTACTTCACTCCCATCGGATACGGGCTGTCAATATCGAAATCTAAACCTATTTGCAAGCTCTTCAGTGGACAATAATTTTAACCTTGTATCTTGTTTGGCGAACCGTACTTGTGCTCGAGTTGTGTCCCATCTCCATATAAATTGTGGTGGGAAGGAAGAAACCATTGATGGTGTTGTCTTTGAAGGAGATGAAGATAGAGTCAAACCATCGCAATTTCTTTTAAGCAAAACAAATTGGGCACTTAGCAATTCTGGCAATTTTATGAATGTTGATAGTAACATTAGCCATTATGTTGTTGGGAATTCATCTGCACTGTCTATGATAAATTCCAAACTGTATGAGAGTGCTCGATTGTCTCCACTGTCTCTTACATACTATGCGTATTGCATGGCAAATGGAAACTACACGATAAGCCTTCATTTTGCAGAAATAATGTTTTCCAATAACAAAAGTTATAGCAGCCTTGGAAGACGCATTTTTGATGTTTATGTGCAGGGAAGGCTGGTGCTGAAGGATTTTAATATCGTAGATGCTGCAGGTGGTATAGGTATAGCTGTCATAAAAACAATTCATGTTGCCATTACCAGTGGTACTCTGGAGATACGATTTTACTGGGCTGGGAAGGGCACACTTTTTATCCCTGTACCGGGAGTATATGGTCCTCTGATTTCAGCCATTTCAATAGAACCTGCAAACACTCCATCAGAAGGTCGAAGTACCTTACCTTTAGGTGCAATTGTTGGAATTATTTTAGCTGGAGTGGCCTTCATTATGCTTTTGGCTCTCCGAATTTCATGGTGGATAGGCTATTTTAGAAGGAAAGCAGCACATCAACAAGATTTGAAGGGTCAAGATCTACTAATTGGTTCATTTACACTGAAGCAAATTAGAACAGCAACAAATAACTTTGATGCTTCCAATAAGATAGGAGAAGGTGGCTTTGGACCTGTTTATAAGGGTATTCTCTCCGATGGTACCGTGATTGCAGTGAAGCAACTTTCTGCAAAGTCAAAACAAGGAAACCGTGAATTTGTGAATGAGATGGGCTTGATATCTTCGGTGAAGCACCCAAATCTCGTTAAGCTTTATGGATGTTGTACGGAAGGAGATCAGCTTTTGCTAGTATATGAATATATGGAAAATAATTGCCTTGCTCAAGCCCTCTTTGGACCTCGAGGACGTCAATTAAGATTGGATTGGGCAACGAGGCAAAAGATTTGTATTGGTATAGCCAAAGGTTTGGCTTTTCTTCATGAGGAGTCGAGATTAAAGATTGTTCACCGAGATATCAAAAGTACTAATGTATTGTTAGATAAAAATCTCAACCCGAAGATATCTGACTTTGGCTTGGCCAAGCTTGATGAAGAAGACAATACCCACATAAGTACTCGGATCGCTGGAACGTATGGTTATATGGCACCGGAATATGCATCACGAGGCCACTTAACTGATAAAGCAGATGTTTATAGCTTTGGTATCGTGGCATTAGAAATAGTTTGTGGAAGGAGCAACAATTTATATCAGTCAAAGGATAAGTGTCTTTATCTTCTTGATTGGGCACTTGTATCGAAAGACAATGACAGTTTAATGGAGCTAGTTGATCCAAAGTTGGGCTCCAACTTTGACAAAGAAGAGGCAATGACAATGATCAATATTGCTTTCCTTTGCACCAATGTCTCTCCCTCCGCAAGACCTACCATGTCCTCTGTGGTGAGCATGCTGGAAGGTAAGGCCCCTGTCAATGAGTTCGTTTCTGATCCAGATGACATGAGAAAAGAGATAACTGAAATGTGGACCCTTATTCAACAAAACGAGAAAATAACCGATGACGAAGACGAACGCAAGACAGAAAGTACGTCACTTATGGGCATTCAATCTACCGATTCTTCAACATCAAAGAAGAGTAGAAACAAGGGTCTCGAACAACATCTATAA 2913 40.89 MGLRYVGDTLGGISWNFSSSDPCSDAVSSSDMYGNSRERTVGCNCSYENATVCHVTSLILTSLSLEGTLPSDLSKLPYLKYLNLSRNCLSGPIPPQWGSTKLVAIFLLGNQLRGSVPEEIGNITTLQALVLESNQLSGKLPSSLGNLRSLRLLNLGSNNFTGDLPASFGMLTSLAGFSIRDNNFVGQIPTFILNWTNIVSIQIQASGLSGPIPSEIGLLKNLIVLMISDLNGASSPFPSLNHLTNLRTLILRSCNIAGVLPDDFGGMVNLEQLDLSFNKISGQIPPSLRGLARMETLLLTGNLLNGSVPDWMLDEVKSIDLSYNKFTSLPSDTGCQYRNLNLFASSSVDNNFNLVSCLANRTCARVVSHLHINCGGKEETIDGVVFEGDEDRVKPSQFLLSKTNWALSNSGNFMNVDSNISHYVVGNSSALSMINSKLYESARLSPLSLTYYAYCMANGNYTISLHFAEIMFSNNKSYSSLGRRIFDVYVQGRLVLKDFNIVDAAGGIGIAVIKTIHVAITSGTLEIRFYWAGKGTLFIPVPGVYGPLISAISIEPANTPSEGRSTLPLGAIVGIILAGVAFIMLLALRISWWIGYFRRKAAHQQDLKGQDLLIGSFTLKQIRTATNNFDASNKIGEGGFGPVYKGILSDGTVIAVKQLSAKSKQGNREFVNEMGLISSVKHPNLVKLYGCCTEGDQLLLVYEYMENNCLAQALFGPRGRQLRLDWATRQKICIGIAKGLAFLHEESRLKIVHRDIKSTNVLLDKNLNPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYASRGHLTDKADVYSFGIVALEIVCGRSNNLYQSKDKCLYLLDWALVSKDNDSLMELVDPKLGSNFDKEEAMTMINIAFLCTNVSPSARPTMSSVVSMLEGKAPVNEFVSDPDDMRKEITEMWTLIQQNEKITDDEDERKTESTSLMGIQSTDSSTSKKSRNKGLEQHL 970
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37927441 37943723 + Sed0019512.4 Sed04g2489 711092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2489 970 ProSiteProfiles Protein kinase domain profile. 629 910 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g2489 970 MobiDBLite consensus disorder prediction 945 959 - -
Sed04g2489 970 CDD STKc_IRAK 635 902 - -
Sed04g2489 970 Gene3D Phosphorylase Kinase; domain 1 595 704 - -
Sed04g2489 970 Gene3D - 368 557 - -
Sed04g2489 970 MobiDBLite consensus disorder prediction 929 970 - -
Sed04g2489 970 FunFam Leucine-rich repeat receptor protein kinase EMS1 93 191 - -
Sed04g2489 970 Pfam Protein tyrosine and serine/threonine kinase 632 900 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g2489 970 SUPERFAMILY Protein kinase-like (PK-like) 614 901 IPR011009 -
Sed04g2489 970 SMART serkin_6 629 900 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g2489 970 Gene3D Transferase(Phosphotransferase) domain 1 705 920 - -
Sed04g2489 970 Pfam Leucine rich repeat 244 304 IPR001611 GO:0005515(InterPro)
Sed04g2489 970 ProSiteProfiles Leucine-rich repeat profile. 269 292 IPR001611 GO:0005515(InterPro)
Sed04g2489 970 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 367 557 - -
Sed04g2489 970 Gene3D Ribonuclease Inhibitor 232 365 IPR032675 -
Sed04g2489 970 Gene3D Ribonuclease Inhibitor 164 231 IPR032675 -
Sed04g2489 970 Pfam Malectin domain 370 552 IPR021720 -
Sed04g2489 970 ProSitePatterns Serine/Threonine protein kinases active-site signature. 751 763 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g2489 970 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 15 918 IPR051824 -
Sed04g2489 970 Gene3D Ribonuclease Inhibitor 9 163 IPR032675 -
Sed04g2489 970 SMART LRR_typ_2 243 266 IPR003591 -
Sed04g2489 970 SMART LRR_typ_2 76 100 IPR003591 -
Sed04g2489 970 SMART LRR_typ_2 147 170 IPR003591 -
Sed04g2489 970 SMART LRR_typ_2 313 336 IPR003591 -
Sed04g2489 970 SMART LRR_typ_2 267 291 IPR003591 -
Sed04g2489 970 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 237 329 - -
Sed04g2489 970 FunFam Putative LRR receptor-like serine/threonine-protein kinase 705 912 - -
Sed04g2489 970 SUPERFAMILY L domain-like 43 355 - -
Sed04g2489 970 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 598 704 - -
Sed04g2489 970 Pfam Leucine Rich Repeat 79 98 IPR001611 GO:0005515(InterPro)
Sed04g2489 970 Pfam Leucine Rich Repeat 149 170 IPR001611 GO:0005515(InterPro)
Sed04g2489 970 Pfam Leucine Rich Repeat 126 147 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2487 Sed-Chr4:37926495 Sed04g2489 Sed-Chr4:37927441 0.00E+00 dispersed
Sed04g2489 Sed-Chr4:37927441 Sed05g2494 Sed-Chr5:36984638 7.40E-270 dispersed
Sed04g2488 Sed-Chr4:37926495 Sed04g2489 Sed-Chr4:37927441 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79051 PF07714 PK_Tyr_Ser-Thr 1.50E-48 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2489 - - - 0.0