Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2493 ATGCCTGGGAATAAGTTTAACGGTAACTCAACCTTCATTCCGGGCTATTTTCCAAATCGAGTTGATAGGCTCTTGCAAGAGAGAAAGTTAAGGAAAAGCAGTAAGGATTCAAATTCAAATGAGGTAAACGACTACAGTAAGGAGTCTGAACTAATTGAAAATGACATTCGTTTGAAAGAAGAAGAAAACGTTGGAATTTCCTGTAAACTTTCGGAAGCTTCTATAGCCGGAAGGGCCTTTGCCGAAGGATGTGACAAGCACGAGGGCAAGCCCCCCAAACAACGGTTGCTGGTTGTGGCCAATAGGCTGCCAGTCTCTGCAGTTAGGAGGGGTGAAGATTCCTGGTCTCTGGAGGTCAGTGCTGGAGGTCTAGTGAGTGCACTTCTGGGCGTGAATGAATTTGAAGCGAGATGGATTGGTTGGGCTGGTGTAAATGTGCCTGATGAGGTAGGACAAAGGGCACTAACGGAAGCTTTGGCTGAAAAGAGGTGTATTCCTGTTTTCCTTGATGAAGAGATTGTCCATCAATACTACAATGGTTATTGCAACAACATTTTATGGCCTTTGTTTCATTACCTCGGCCTTCCTCAAGAAGATCGTCTTGCCACCACCCGTAGCTTTCAGTCTCAGTTTGCTGCATACAAGAAAGCGAACCAAATGTTTGCTGATGTAGTTAACGAGCACTATGAGGAGGGTGATGTTGTTTGGTGCCATGATTACCATCTTATGTTTCTTCCAAAATGTCTGAAAGATCATAATCGTCAGATGAAAGTCGGCTGGTTTCTCCATACACCTTTTCCTTCTTCCGAAATCCATAGAACCCTTCCGTCCCGATCTGAGCTTCTGCGCTCAGTACTTGCTGCTGATTTGGTTGGCTTTCACACATATGATTATGCTCGTCATTTTGTAAGTGCTTGCACCCGTATTCTTGGACTTGAGGGTACACCAGAAGGAGTTGAGGATCAAGGAAAGCTAACACGAGTTGCTGCATTCCCTATTGGTATAGACTCGGATCGATTCATACGTGCCCTAAAAACTACTGAAGTTCAAGAACGTATTGGAGAGTTAAAGGAAAGATTCAAAGGTCGAAAGGTAATGTTAGGTGTTGATCGTCTGGATATGATTAAAGGGATACCTCAAAAGATATTAGCTTTTGAAAAGTTTTTGGAGGAAAACTCTGATTGGCGCGATAAAGTTGTTTTGCTGCAAATTGCAGTGCCAACAAGAACAGATGTGCCAGAATACCAAAAGCTTACAAGCCAAGTTCATGAAATAGTTGGACGCATTAATGGGAGATTTGGAACGTTGACTACGGTTCCTATACATCATCTGGATCGCTCCCTTGATTTTAATGCATTATGCGCGCTATATGCTGTAACTGATGTAGCACTGGTCACATCTTTGAGGGATGGTATGAATCTCGTCAGTTATGAGTTTGTTGCTTGCCAGGATGCAAAGAAAGGGGTTTTAATTCTTAGTGAGTTTGCTGGTGCTGCGCAATCTCTGGGTGCTGGGGCGCTTTTGGTCAACCCCTGGAACGTAACAGAAGTTGCCGCATCAATTGATCGAGCATTAAAAATGAGTGCTGAAGAAAGAGAAAAGCGCCATATTCATAATTTTCTCCATGTGACAACACACACCGCTCAGGAATGGGCAGAAACGTTTGTGAGTGAACTTAACGATACAGTAGTGGAAGCTGAACTGAGGATCAAACAATCTGCCCCCCAGCTTCCATTTCACAATGCAGTTAAACGTTATGAGCAATCTACTAATAGATTACTTATACTGGGGCTCAACTCAACAATAACTGAACCAGTGGACACTCCGGAGAGAGGAGGCGATCAGATTAGAGAAATGGAACTGAAACTACACCCACATTTGAAAGAACCGTTGACGGCAATTTGCAACGACCCAAATACGACAGTAGTCATCCTCAGTGGAAGTGATAGAACAGTCTTGGATGATAACTTTGGGGAGTATGACATGTGGTTGGCAGCTGAGAATGGGATGTTTCTACGCTTCACAAGGGGTGACTGGATGACTACAATGCCTGAGCATTTGAATATGGAATGGGTCGACAGTGTGAAGCATGTTTTTGAGTACTTCACAGAGAGAACTCCCCGTTCCCATTTCGAGCTCCGCGAAACTTCAATTGTTTGGAACTATAAATATGCAGATGTTGAGTTTGGAAAGCTGCAAGCAAGGGATATGCTGCAGCATTTATGGACAGGTCCAATTTCAAATGCATCAGTTGATGTTGTTCAAGGTAGCCGATCCGTTGAGGTGCGAGCTGTTGGTGTTACCAAGGGATCGGCAATTGACCGAATATTGGGAGAAATAGTTCACAGCAAGTCCATGACGACTCCAATAGATTATGTCTTGTGTGTAGGCCATTTTCTTGGGAAGGATGAAGATGTGTACACTTTCTTTGAGCCTGAACTTCCATTGGATACCATAGGCATGGCAAGATCCAAGGGAACCGACGGGCTTAAGTTTACTGGTGAGAGAAGATCTTCCATCAAAGTTCCTGCGAGTAGGAATGGATCAAAATCGCCTCACAGTAAGACGCGGTCGAATTCGGAGAAGAAAACTTCAAATCATAACTGTGCAAACGGTCGGAAACCATCACCAGAGAAGATACAATGGAATGTGCTGGATCTCAAGGCTGAGAACTACTTCTCTTGTTCTGTTGGACGATTACGAACCAATGCTCGGTATACCCTCGGATCATCGGATGATGTGGTGACACTCCTAAAGGAGTTGGCAAGAGCAAATGCATTTTCTTGA 2787 43.99 MPGNKFNGNSTFIPGYFPNRVDRLLQERKLRKSSKDSNSNEVNDYSKESELIENDIRLKEEENVGISCKLSEASIAGRAFAEGCDKHEGKPPKQRLLVVANRLPVSAVRRGEDSWSLEVSAGGLVSALLGVNEFEARWIGWAGVNVPDEVGQRALTEALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYKKANQMFADVVNEHYEEGDVVWCHDYHLMFLPKCLKDHNRQMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRVAAFPIGIDSDRFIRALKTTEVQERIGELKERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEENSDWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTTVPIHHLDRSLDFNALCALYAVTDVALVTSLRDGMNLVSYEFVACQDAKKGVLILSEFAGAAQSLGAGALLVNPWNVTEVAASIDRALKMSAEEREKRHIHNFLHVTTHTAQEWAETFVSELNDTVVEAELRIKQSAPQLPFHNAVKRYEQSTNRLLILGLNSTITEPVDTPERGGDQIREMELKLHPHLKEPLTAICNDPNTTVVILSGSDRTVLDDNFGEYDMWLAAENGMFLRFTRGDWMTTMPEHLNMEWVDSVKHVFEYFTERTPRSHFELRETSIVWNYKYADVEFGKLQARDMLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGSAIDRILGEIVHSKSMTTPIDYVLCVGHFLGKDEDVYTFFEPELPLDTIGMARSKGTDGLKFTGERRSSIKVPASRNGSKSPHSKTRSNSEKKTSNHNCANGRKPSPEKIQWNVLDLKAENYFSCSVGRLRTNARYTLGSSDDVVTLLKELARANAFS 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37975318 38001365 + Sed0019760.1 Sed04g2493 711096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2493 928 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 86 923 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Sed04g2493 928 MobiDBLite consensus disorder prediction 840 854 - -
Sed04g2493 928 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 342 544 - -
Sed04g2493 928 Coils Coil 42 62 - -
Sed04g2493 928 CDD GT20_TPS 95 560 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Sed04g2493 928 FunFam Trehalose-6-phosphatase synthase S4 731 842 - -
Sed04g2493 928 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 87 341 - -
Sed04g2493 928 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 95 560 IPR012766 GO:0003825(InterPro)|GO:0005992(InterPro)
Sed04g2493 928 Gene3D Glycogen Phosphorylase B; 337 544 - -
Sed04g2493 928 Gene3D - 685 765 - -
Sed04g2493 928 MobiDBLite consensus disorder prediction 827 876 - -
Sed04g2493 928 Pfam Trehalose-phosphatase 618 816 IPR003337 GO:0005992(InterPro)
Sed04g2493 928 FunFam Alpha,alpha-trehalose-phosphate synthase 619 690 - -
Sed04g2493 928 Gene3D - 619 779 IPR023214 -
Sed04g2493 928 Gene3D Glycogen Phosphorylase B; 84 335 - -
Sed04g2493 928 SUPERFAMILY HAD-like 592 922 IPR036412 -
Sed04g2493 928 CDD HAD_TPP 593 813 - -
Sed04g2493 928 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 94 563 - -
Sed04g2493 928 Pfam Glycosyltransferase family 20 95 560 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Sed04g2493 928 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 685 765 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2493 Sed-Chr4:37975318 Sed04g2496 Sed-Chr4:37982706 0.00E+00 dispersed
Sed04g2493 Sed-Chr4:37975318 Sed04g2494 Sed-Chr4:37975318 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2493 K16055 - csv:101204478 1721.83