Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2495 ATGAGAAGCATTCTGGTTTTTCAGTCACCAGTTTTCAGTTTTGCACTTCTGAATTATTGCTACTTGCAGAGGTGTATTCCTGTTTTCCTTGATGAAGAGATTGTCCATCAATACTACAATGGTTATTGCAACAACATTTTATGGCCTTTGTTTCATTACCTCGGCCTTCCTCAAGAAGATCGTCTTGCCACCACCCGTAGCTTTCAGTCTCAGTTTGCTGCATACAAGAAAGCGAACCAAATGTTTGCTGATGTAGTTAACGAGCACTATGAGGAGGGTGATGTTGTTTGGTGCCATGATTACCATCTTATGTTTCTTCCAAAATGTCTGAAAGATCATAATCGTCAGATGAAAGTCGGCTGGTTTCTCCATACACCTTTTCCTTCTTCCGAAATCCATAGAACCCTTCCGTCCCGATCTGAGCTTCTGCGCTCAGTACTTGCTGCTGATTTGGTTGGCTTTCACACATATGATTATGCTCGTCATTTTGTAAGTGCTTGCACCCGTATTCTTGGACTTGAGGGTACACCAGAAGGAGTTGAGGATCAAGGAAAGCTAACACGAGTTGCTGCATTCCCTATTGGTATAGACTCGGATCGATTCATACGTGCCCTAAAAACTACTGAAGTTCAAGAACGTATTGGAGAGTTAAAGGAAAGATTCAAAGGTCGAAAGGTAATGTTAGGTGTTGATCGTCTGGATATGATTAAAGGGATACCTCAAAAGATATTAGCTTTTGAAAAGTTTTTGGAGGAAAACTCTGATTGGCGCGATAAAGTTGTTTTGCTGCAAATTGCAGTGCCAACAAGAACAGATGTGCCAGAATACCAAAAGCTTACAAGCCAAGTTCATGAAATAGTTGGACGCATTAATGGGAGATTTGGAACGTTGACTACGGTTCCTATACATCATCTGGATCGCTCCCTTGATTTTAATGCATTATGCGCGCTATATGCTGTAACTGATGTAGCACTGGTCACATCTTTGAGGGATGGTATGAATCTCGTCAGTTATGAGTTTGTTGCTTGCCAGGATGCAAAGAAAGGGGTTTTAATTCTTAGTGAGTTTGCTGGTGCTGCGCAATCTCTGGGTGCTGGGGCGCTTTTGGTCAACCCCTGGAACGTAACAGAAGTTGCCGCATCAATTGATCGAGCATTAAAAATGAGTGCTGAAGAAAGAGAAAAGCGCCATATTCATAATTTTCTCCATGTGACAACACACACCGCTCAGGAATGGGCAGAAACGTTTGTGAGTGAACTTAACGATACAGTAGTGGAAGCTGAACTGAGGATCAAACAATCTGCCCCCCAGCTTCCATTTCACAATGCAGTTAAACGTTATGAGCAATCTACTAATAGATTACTTATACTGGGGCTCAACTCAACAATAACTGAACCAGTGGACACTCCGGAGAGAGGAGGCGATCAGATTAGAGAAATGGAACTGAAACTACACCCACATTTGAAAGAACCGTTGACGGCAATTTGCAACGACCCAAATACGACAGTAGTCATCCTCAGTGGAAGTGATAGAACAGTCTTGGATGATAACTTTGGGGAGTATGACATGTGGTTGGCAGCTGAGAATGGGATGTTTCTACGCTTCACAAGGGGTGACTGGATGACTACAATGCCTGAGCATTTGAATATGGAATGGGTCGACAGTGTGAAGCATGTTTTTGAGTACTTCACAGAGAGAACTCCCCGTTCCCATTTCGAGCTCCGCGAAACTTCAATTGTTTGGAACTATAAATATGCAGATGTTGAGTTTGGAAAGCTGCAAGCAAGGGATATGCTGCAGCATTTATGGACAGGTCCAATTTCAAATGCATCAGTTGATGTTGTTCAAGGTAGCCGATCCGTTGAGGTGCGAGCTGTTGGTGTTACCAAGGGATCGGCAATTGACCGAATATTGGGAGAAATAGTTCACAGCAAGTCCATGACGACTCCAATAGATTATGTCTTGTGTGTAGGCCATTTTCTTGGGAAGGATGAAGATGTGTACACTTTCTTTGAGCCTGAACTTCCATTGGATACCATAGGCATGGCAAGATCCAAGGGAACCGACGGGCTTAAGTTTACTGGTGAGAGAAGATCTTCCATCAAAGTTCCTGCGAGTAGGAATGGATCAAAATCGCCTCACAGTAAGACGCGGTCGAATTCGGAGAAGAAAACTTCAAATCATAACTGTGCAAACGGTCGGAAACCATCACCAGAGAAGATACAATGGAATGTGCTGGATCTCAAGGCTGAGAACTACTTCTCTTGTTCTGTTGGACGATTACGAACCAATGCTCGGTATACCCTCGGATCATCGGATGATGTGGTGACACTCCTAAAGGAGTTGGCAAGAGCAAATGCATTTTCTTGA 2370 43.33 MRSILVFQSPVFSFALLNYCYLQRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYKKANQMFADVVNEHYEEGDVVWCHDYHLMFLPKCLKDHNRQMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRVAAFPIGIDSDRFIRALKTTEVQERIGELKERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEENSDWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTTVPIHHLDRSLDFNALCALYAVTDVALVTSLRDGMNLVSYEFVACQDAKKGVLILSEFAGAAQSLGAGALLVNPWNVTEVAASIDRALKMSAEEREKRHIHNFLHVTTHTAQEWAETFVSELNDTVVEAELRIKQSAPQLPFHNAVKRYEQSTNRLLILGLNSTITEPVDTPERGGDQIREMELKLHPHLKEPLTAICNDPNTTVVILSGSDRTVLDDNFGEYDMWLAAENGMFLRFTRGDWMTTMPEHLNMEWVDSVKHVFEYFTERTPRSHFELRETSIVWNYKYADVEFGKLQARDMLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGSAIDRILGEIVHSKSMTTPIDYVLCVGHFLGKDEDVYTFFEPELPLDTIGMARSKGTDGLKFTGERRSSIKVPASRNGSKSPHSKTRSNSEKKTSNHNCANGRKPSPEKIQWNVLDLKAENYFSCSVGRLRTNARYTLGSSDDVVTLLKELARANAFS 789
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37975318 38001365 + Sed0019760.3 Sed04g2495 711098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2495 789 SUPERFAMILY HAD-like 453 783 IPR036412 -
Sed04g2495 789 Gene3D - 546 626 - -
Sed04g2495 789 MobiDBLite consensus disorder prediction 688 737 - -
Sed04g2495 789 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 24 424 - -
Sed04g2495 789 Pfam Glycosyltransferase family 20 24 421 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Sed04g2495 789 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 546 626 - -
Sed04g2495 789 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 24 421 IPR012766 GO:0003825(InterPro)|GO:0005992(InterPro)
Sed04g2495 789 Gene3D Glycogen Phosphorylase B; 198 406 - -
Sed04g2495 789 Gene3D - 480 640 IPR023214 -
Sed04g2495 789 CDD HAD_TPP 454 674 - -
Sed04g2495 789 Gene3D Glycogen Phosphorylase B; 24 417 - -
Sed04g2495 789 MobiDBLite consensus disorder prediction 701 715 - -
Sed04g2495 789 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 203 405 - -
Sed04g2495 789 FunFam Trehalose-6-phosphatase synthase S4 592 703 - -
Sed04g2495 789 Pfam Trehalose-phosphatase 479 677 IPR003337 GO:0005992(InterPro)
Sed04g2495 789 CDD GT20_TPS 25 421 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Sed04g2495 789 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 23 784 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Sed04g2495 789 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 13 202 - -
Sed04g2495 789 FunFam Alpha,alpha-trehalose-phosphate synthase 480 551 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2495 Sed-Chr4:37975318 Sed08g2710 Sed-Chr8:39028984 0.00E+00 dispersed
Sed04g2494 Sed-Chr4:37975318 Sed04g2495 Sed-Chr4:37975318 0.00E+00 tandem
Sed04g2495 Sed-Chr4:37975318 Sed04g2496 Sed-Chr4:37982706 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2495 K16055 - csv:101204478 1454.88