Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed04g2504 | ATGGATTACTTCCATGGCTTACCTCCACTCAAAAGGCTCAGAATCCTTCAAGAACAAGAACGAAATCACCACCAATTGAATCAATCCCTCGATTCTTGTTCCCTCCCAGCGAAGAAACGGAAGGAGTCTCGCGAATCGCCGTTCCTCGACCCCGACCGATCCGCCATTTCCGCATCTCCTTACTCCTTGCCGACGAAGAAAAGAGTCTGGGCCCTTCATCCTGATTTCCCCCCTGAGTCTTTAGATCTCAATGTCGAATACAAGCCTTCCCTGGAGGAAGAATCGACTTCCGAAACCGAATTGGATCGAGGGAAACAAGAGACAAAAGAGGAGATTTCTCATTTTGAGATTGAGATTCAACCGATTGAATCTATCCAGGAAGAAGAAGATGATGGGATTCTGTGTGCCATTTGTCTAAGCACGGATGGCGATCCATCCGACCCGATCGTGTTCTGCGACGGATGTGATTTGATGGTACATGCTTCGTGTTATGGTAATCCGCTAGTGAAGAATGTACCAGAAGGCGATTGGTTCTGTGTCCAATGCTTAGCTTCTTCGTCTTCCACGATGGCGGAGAAGAAGGGTTCAGAGACTCCATTTTCATGCTGTCTCTGTCCTCTCGAGGGAGGCGCTATGAAGCCGACGAACGACGGGCGATGGGCTCATATTGTGTGTGGGCTGTTTGTTCCTGAGGTGTTCTTTGAGGACCCAGATGGGAGAGAAGGGATTGATTGCTCTAAGATTCTAAAGAAGAGATGGAAATCTGAATGTTATATATGCAAAACTGCTAGAGGCTGTGCCATTGATTGCTCAGAGCCTAAGTGCAATTTGGGATTTCATGTTACTTGTGGGCTGAAGGAGGATCTTTGCATTGAGTACAAAGAAGGAAGAAGATCTGGGGCTATTGTTGCTGGGTTCTGCAGAAATCATTCTGATTTGTGGATGAAGCAACAATCAACAGGGAAGTTCAAAATTGTGGCCAGAGATGAAGGTAATTAA | 999 | 46.65 | MDYFHGLPPLKRLRILQEQERNHHQLNQSLDSCSLPAKKRKESRESPFLDPDRSAISASPYSLPTKKRVWALHPDFPPESLDLNVEYKPSLEEESTSETELDRGKQETKEEISHFEIEIQPIESIQEEEDDGILCAICLSTDGDPSDPIVFCDGCDLMVHASCYGNPLVKNVPEGDWFCVQCLASSSSTMAEKKGSETPFSCCLCPLEGGAMKPTNDGRWAHIVCGLFVPEVFFEDPDGREGIDCSKILKKRWKSECYICKTARGCAIDCSEPKCNLGFHVTCGLKEDLCIEYKEGRRSGAIVAGFCRNHSDLWMKQQSTGKFKIVARDEGN | 332 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 38041201 | 38043282 | + | Sed0014657.1 | Sed04g2504 | 711107 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed04g2504 | 332 | SMART | PHD_3 | 256 | 311 | IPR001965 | - | |
| Sed04g2504 | 332 | SMART | PHD_3 | 134 | 183 | IPR001965 | - | |
| Sed04g2504 | 332 | MobiDBLite | consensus disorder prediction | 35 | 49 | - | - | |
| Sed04g2504 | 332 | SUPERFAMILY | FYVE/PHD zinc finger | 120 | 187 | IPR011011 | - | |
| Sed04g2504 | 332 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 199 | 311 | IPR034732 | - | |
| Sed04g2504 | 332 | CDD | PHD_BRPF_JADE_like | 134 | 182 | - | - | |
| Sed04g2504 | 332 | ProSiteProfiles | Zinc finger PHD-type profile. | 132 | 185 | IPR019787 | - | |
| Sed04g2504 | 332 | PANTHER | PHD FINGER PROTEINS | 32 | 311 | IPR050701 | GO:0006357(PANTHER) | |
| Sed04g2504 | 332 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 195 | 313 | IPR013083 | - | |
| Sed04g2504 | 332 | Pfam | PHD-zinc-finger like domain | 201 | 297 | - | - | |
| Sed04g2504 | 332 | MobiDBLite | consensus disorder prediction | 89 | 110 | - | - | |
| Sed04g2504 | 332 | MobiDBLite | consensus disorder prediction | 23 | 60 | - | - | |
| Sed04g2504 | 332 | Pfam | PHD-finger | 135 | 182 | IPR019787 | - | |
| Sed04g2504 | 332 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 120 | 190 | IPR013083 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed04g2504 | Sed-Chr4:38041201 | Sed09g0478 | Sed-Chr9:4622345 | 2.50E-28 | dispersed | |
| Sed04g2504 | Sed-Chr4:38041201 | Sed07g0015 | Sed-Chr7:491552 | 2.30E-29 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 38254 | PF13832 | zf-HC5HC2H_2 | 8.10E-29 | CL0390 | Sed | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed04g2504 | K11380 | - | csv:101203744 | 530.02 |