Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed04g2515 | ATGTGGTCTGCTTCAGCGGCGAATTCGGTGTGGATAGTTGCGGCGGCGATTATAGTGGTTTTGGGATGGAAGCTTATGAACTGGATTTGGTTCCGGCCGAAGAGACTAGAGAAGCTTCTACGCCGGCAAGGTTTCGCCGGAAATCCTTACCGGATTCTGTACGGAGACTTGAAGGACAGAGCCGCCATGAGAGACAGAGCAATGTCCAAGCCCATGACCTTCTCCAATGATATTGCTCCACGTGTTATCCCCTCTATTCATCATACCATCCACAACTATGGTAAGAATTCATTCATGTGGCTTGGCCCCATTCCAAGAGTGCATATCACGGATCCTGAACATATGAAAACGGTGTTTTCATTAATCAATGATATCCAAAAGCCAAAAATGAATCCTTTTGTCAAGTTGCTAGCAGAAGGAGTTGCAAACCATGAAGGAGCAAAATGGGCAAAGCACAGAAAGATAATCAATCCTGCATTTCATTTAGAAAAGCTTAAGGATATGGTACCAGCATTCTATCACAGTTGTAACGAAATGATTATCAAATGGGAAAGCATGGTCTCTGAAGAGGGATCATGTGAGTTGGATGTGATGCCTTATCTACAAACTATGGCATCTGATGCCATTTCTCAAACCGCGTTCGGGAGTAGCTACGAGAAAGGGAAAAAGATCTTCAAACTTCAAGCTGAACTAGCTGAATTGGTGATTCAATCAATAATGGGAATCTACATTCCAGGATGGAGGTATGTACCTACAAAGGCGAACAATAAAATGAAAAGGGTGAGTAACGAGATAAAAGACTTGATCTTGGGTATTATAAAGGAAAGGCAAAAGTCTATGAAGACAGGTGAGGCAACACAAAGGGATCTATTAGGACTTCTCATGGAATCCAATTTGAATGAAATTGAAGCACATGGAAACAAAAAAGATATTGGAATGAGCATAGACGATGTAATTCATGAGTGCAGGATTTTCTACATTGCTGGCCAAGAAACTACAGCTACATTACTGGTATGGACCATGGTATTGTTGAGTAAATACTCAGAATGGCAAGAGCGAGCAAGAACAGAGGTTTTGGAGGTCTTTGGAAACAATAAACCAGATTATGATGGTTTAAGTCGCCTAAAAGTTATACCTATGATATTGAACGAGGTTCTTAGGCTATATCCACCGGTGGCTATGCTTACTCGTGCAGTTAAAAAAGAGACGAAAGTAGGAAATATAACTTTACCAGCAGGAGTGGAGCTCGCCTTACCCGTTATCCTGACCCAACGAGATCATGAGCTATGGGGTGAAGATGCACATGAATTCAAACCACAAAGATTTTCTGAAGGTGTTTCGAAAGCGACGAAACATCCAACCGCTTTTGTCCCTTTTGGTTGGGGTCCTCGAATATGTGTAGGGCTAAACTTTACCATGATTGAAGCCAAAATGGCCCTATCAATAATCCTACAACGCTTCTCATTTGAGCTTTCTTCATCATATACCCACACTCCTACTGTGTCTTTAACCACCATACCTCAACATGGAGCTCATATTGTCCTACACAAACTCTATCATCGAGTTTAA | 1569 | 41.87 | MWSASAANSVWIVAAAIIVVLGWKLMNWIWFRPKRLEKLLRRQGFAGNPYRILYGDLKDRAAMRDRAMSKPMTFSNDIAPRVIPSIHHTIHNYGKNSFMWLGPIPRVHITDPEHMKTVFSLINDIQKPKMNPFVKLLAEGVANHEGAKWAKHRKIINPAFHLEKLKDMVPAFYHSCNEMIIKWESMVSEEGSCELDVMPYLQTMASDAISQTAFGSSYEKGKKIFKLQAELAELVIQSIMGIYIPGWRYVPTKANNKMKRVSNEIKDLILGIIKERQKSMKTGEATQRDLLGLLMESNLNEIEAHGNKKDIGMSIDDVIHECRIFYIAGQETTATLLVWTMVLLSKYSEWQERARTEVLEVFGNNKPDYDGLSRLKVIPMILNEVLRLYPPVAMLTRAVKKETKVGNITLPAGVELALPVILTQRDHELWGEDAHEFKPQRFSEGVSKATKHPTAFVPFGWGPRICVGLNFTMIEAKMALSIILQRFSFELSSSYTHTPTVSLTTIPQHGAHIVLHKLYHRV | 522 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 38080325 | 38083846 | - | Sed0001879.1 | Sed04g2515 | 711118 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed04g2515 | 522 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 459 | 468 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed04g2515 | 522 | PRINTS | P450 superfamily signature | 457 | 466 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2515 | 522 | PRINTS | P450 superfamily signature | 328 | 345 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2515 | 522 | PRINTS | P450 superfamily signature | 466 | 477 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2515 | 522 | PRINTS | P450 superfamily signature | 380 | 391 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2515 | 522 | PRINTS | E-class P450 group I signature | 317 | 334 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2515 | 522 | PRINTS | E-class P450 group I signature | 456 | 466 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2515 | 522 | PRINTS | E-class P450 group I signature | 204 | 222 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2515 | 522 | PRINTS | E-class P450 group I signature | 466 | 489 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2515 | 522 | PRINTS | E-class P450 group I signature | 90 | 109 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2515 | 522 | PRINTS | E-class P450 group I signature | 337 | 363 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2515 | 522 | Pfam | Cytochrome P450 | 91 | 493 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2515 | 522 | Gene3D | Cytochrome P450 | 75 | 520 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2515 | 522 | CDD | CYP72 | 83 | 514 | - | - | |
| Sed04g2515 | 522 | FunFam | Cytochrome P450 734A1 | 30 | 519 | - | - | |
| Sed04g2515 | 522 | PANTHER | CYTOCHROME P450 FAMILY MEMBER | 15 | 510 | IPR050665 | GO:0004497(PANTHER) | |
| Sed04g2515 | 522 | SUPERFAMILY | Cytochrome P450 | 81 | 516 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed04g2515 | Sed-Chr4:38080325 | Sed06g0670 | Sed-Chr6:6309800 | 5.10E-209 | dispersed | |
| Sed04g2515 | Sed-Chr4:38080325 | Sed04g2516 | Sed-Chr4:38088584 | 8.80E-278 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed04g2515 | - | - | - | 0.0 |