Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2516 ATGTGGGTAGTTGCGGCGGCGATTATAGTGGTTTTGGGATGGAAGCTTCTGAACTGGATATGGTTGAGGCCGAAGAGACTAGAGAAGCTTCTACGCCGGCAAGGTTTCGCCGGAAATCCTTACCGGATTCTGTACGGAGACTTGAAGGACAGAGCCGCCATGAGAGACAGAGCAATGTCCAAGCCCATGACCTTCTCCAATGATATTGCTCCACGTGTTATCCCCTCTGTTCATCATACCATCCAAAACTATGGTAAGAATTCATTCATGTGGCTTGGCCCCATTCCAAGAGTGCACATCATGGATCCTGAACATATCAAAGCAGTGTTTTCATTAATCAATGATATCCAAAAGCCAAAAATGAATCCCCTTGTCAAGTTGCTAGCAGATGGACTTGTCAATCATGAAGGAGCAAAATGGGTAAAGCACAGAAAGATAATCAATCCTGCATTTCATTTAGAAAAGCTTAAGGATATGGTACCAGCATTCTATCACAGTTGTAACGAAATGGTTGTCAAATGGGAAGGCATGGTCTCTGAGGATGGATCATGTGAGTTAGATGTAATGCCTTATCTACAAACTATGGCATCTGATGTCATTTCTCGAACGGCGTTCGGGAGTAGCTATGAGAAAGGGAAAAAGATCTTTGAACTTCAAGCTGAACTAGCTGTATTGGTGCTTCAATCAGTAATGGGAATCTATATTCCAGGATGGAGATTTGTACCCACAAAGACGAACAATAAAATGAAAAAGCTGAGTAACGAGATAAAAGACTTGATCTTGGGTATTATAAATGAAAGGCAAAAGTCTATGAAGGCAGCAGGTGAAGCAACACAAAGGGATCTATTAGGACTTCTCATGGAATCCAATTTCAATGAAATTGAAGCACATGGAAACAAAAAAGATATTGGAATGAGCATAGAAGATGTTATTGATGAATGCAGGATTTTCTATATTGCTGGCCAAGAAACTACAGCTACATTACTGGTATGGACCATGGTATTGTTGAGTAAATACTCAGAATGGCAAGAGCAGGCAAGAACAGAGGTTTTGGAGGTCTTTGGAAACAATAAACCAGATTATGATGGTTTAAGTCGCCTAAAAGTTGTACCTATGATCTTGAACGAGGTTCTTAGGCTATATCCACCGGTGGCTATGCTTGCTCGTATTGTTGAGAAGGAGACAAGACTTGGAAATATAACTTTACCAGCAGGAGTGCTGCTAGGCTTACCAATTATATTGACCCAACGTGATCATGAGCTATGGGGTGAAGATGCACATGAATTTAAACCAGAAAGATTTTCTGAAGGTGTTTCTAAAGCAACGAAAAATCCAACCGCTTTCGTCCCGTTTGGCTGGGGTCCTCGAATATGTGTAGGACTAAACTTTGCCATGATTGAAGCCAAAATGGCATTATCAATAATCCTACAACGCTTCTCATTCGAGCTTTCTTCATCTTATACTCATACTCCTACTGCAGCTTTAACTACCCAACCTCAACATGGAGCTCATATTGTCCTACACAAACTCTAG 1533 41.23 MWVVAAAIIVVLGWKLLNWIWLRPKRLEKLLRRQGFAGNPYRILYGDLKDRAAMRDRAMSKPMTFSNDIAPRVIPSVHHTIQNYGKNSFMWLGPIPRVHIMDPEHIKAVFSLINDIQKPKMNPLVKLLADGLVNHEGAKWVKHRKIINPAFHLEKLKDMVPAFYHSCNEMVVKWEGMVSEDGSCELDVMPYLQTMASDVISRTAFGSSYEKGKKIFELQAELAVLVLQSVMGIYIPGWRFVPTKTNNKMKKLSNEIKDLILGIINERQKSMKAAGEATQRDLLGLLMESNFNEIEAHGNKKDIGMSIEDVIDECRIFYIAGQETTATLLVWTMVLLSKYSEWQEQARTEVLEVFGNNKPDYDGLSRLKVVPMILNEVLRLYPPVAMLARIVEKETRLGNITLPAGVLLGLPIILTQRDHELWGEDAHEFKPERFSEGVSKATKNPTAFVPFGWGPRICVGLNFAMIEAKMALSIILQRFSFELSSSYTHTPTAALTTQPQHGAHIVLHKL 510
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 38088584 38093134 - Sed0003874.1 Sed04g2516 711119
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2516 510 PRINTS E-class P450 group I signature 448 458 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g2516 510 PRINTS E-class P450 group I signature 309 326 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g2516 510 PRINTS E-class P450 group I signature 81 100 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g2516 510 PRINTS E-class P450 group I signature 195 213 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g2516 510 PRINTS E-class P450 group I signature 458 481 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g2516 510 PRINTS E-class P450 group I signature 412 436 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g2516 510 PRINTS E-class P450 group I signature 329 355 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g2516 510 PANTHER CYTOCHROME P450 FAMILY MEMBER 6 502 IPR050665 GO:0004497(PANTHER)
Sed04g2516 510 Gene3D Cytochrome P450 69 509 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g2516 510 FunFam Cytochrome P450 734A1 21 510 - -
Sed04g2516 510 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 451 460 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Sed04g2516 510 CDD CYP72 74 506 - -
Sed04g2516 510 Pfam Cytochrome P450 80 486 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g2516 510 PRINTS P450 superfamily signature 449 458 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g2516 510 PRINTS P450 superfamily signature 458 469 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g2516 510 PRINTS P450 superfamily signature 372 383 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g2516 510 PRINTS P450 superfamily signature 320 337 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g2516 510 SUPERFAMILY Cytochrome P450 72 508 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2516 Sed-Chr4:38088584 Sed06g0670 Sed-Chr6:6309800 1.00E-214 dispersed
Sed04g2515 Sed-Chr4:38080325 Sed04g2516 Sed-Chr4:38088584 8.80E-278 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2516 - - - 0.0