Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed04g2516 | ATGTGGGTAGTTGCGGCGGCGATTATAGTGGTTTTGGGATGGAAGCTTCTGAACTGGATATGGTTGAGGCCGAAGAGACTAGAGAAGCTTCTACGCCGGCAAGGTTTCGCCGGAAATCCTTACCGGATTCTGTACGGAGACTTGAAGGACAGAGCCGCCATGAGAGACAGAGCAATGTCCAAGCCCATGACCTTCTCCAATGATATTGCTCCACGTGTTATCCCCTCTGTTCATCATACCATCCAAAACTATGGTAAGAATTCATTCATGTGGCTTGGCCCCATTCCAAGAGTGCACATCATGGATCCTGAACATATCAAAGCAGTGTTTTCATTAATCAATGATATCCAAAAGCCAAAAATGAATCCCCTTGTCAAGTTGCTAGCAGATGGACTTGTCAATCATGAAGGAGCAAAATGGGTAAAGCACAGAAAGATAATCAATCCTGCATTTCATTTAGAAAAGCTTAAGGATATGGTACCAGCATTCTATCACAGTTGTAACGAAATGGTTGTCAAATGGGAAGGCATGGTCTCTGAGGATGGATCATGTGAGTTAGATGTAATGCCTTATCTACAAACTATGGCATCTGATGTCATTTCTCGAACGGCGTTCGGGAGTAGCTATGAGAAAGGGAAAAAGATCTTTGAACTTCAAGCTGAACTAGCTGTATTGGTGCTTCAATCAGTAATGGGAATCTATATTCCAGGATGGAGATTTGTACCCACAAAGACGAACAATAAAATGAAAAAGCTGAGTAACGAGATAAAAGACTTGATCTTGGGTATTATAAATGAAAGGCAAAAGTCTATGAAGGCAGCAGGTGAAGCAACACAAAGGGATCTATTAGGACTTCTCATGGAATCCAATTTCAATGAAATTGAAGCACATGGAAACAAAAAAGATATTGGAATGAGCATAGAAGATGTTATTGATGAATGCAGGATTTTCTATATTGCTGGCCAAGAAACTACAGCTACATTACTGGTATGGACCATGGTATTGTTGAGTAAATACTCAGAATGGCAAGAGCAGGCAAGAACAGAGGTTTTGGAGGTCTTTGGAAACAATAAACCAGATTATGATGGTTTAAGTCGCCTAAAAGTTGTACCTATGATCTTGAACGAGGTTCTTAGGCTATATCCACCGGTGGCTATGCTTGCTCGTATTGTTGAGAAGGAGACAAGACTTGGAAATATAACTTTACCAGCAGGAGTGCTGCTAGGCTTACCAATTATATTGACCCAACGTGATCATGAGCTATGGGGTGAAGATGCACATGAATTTAAACCAGAAAGATTTTCTGAAGGTGTTTCTAAAGCAACGAAAAATCCAACCGCTTTCGTCCCGTTTGGCTGGGGTCCTCGAATATGTGTAGGACTAAACTTTGCCATGATTGAAGCCAAAATGGCATTATCAATAATCCTACAACGCTTCTCATTCGAGCTTTCTTCATCTTATACTCATACTCCTACTGCAGCTTTAACTACCCAACCTCAACATGGAGCTCATATTGTCCTACACAAACTCTAG | 1533 | 41.23 | MWVVAAAIIVVLGWKLLNWIWLRPKRLEKLLRRQGFAGNPYRILYGDLKDRAAMRDRAMSKPMTFSNDIAPRVIPSVHHTIQNYGKNSFMWLGPIPRVHIMDPEHIKAVFSLINDIQKPKMNPLVKLLADGLVNHEGAKWVKHRKIINPAFHLEKLKDMVPAFYHSCNEMVVKWEGMVSEDGSCELDVMPYLQTMASDVISRTAFGSSYEKGKKIFELQAELAVLVLQSVMGIYIPGWRFVPTKTNNKMKKLSNEIKDLILGIINERQKSMKAAGEATQRDLLGLLMESNFNEIEAHGNKKDIGMSIEDVIDECRIFYIAGQETTATLLVWTMVLLSKYSEWQEQARTEVLEVFGNNKPDYDGLSRLKVVPMILNEVLRLYPPVAMLARIVEKETRLGNITLPAGVLLGLPIILTQRDHELWGEDAHEFKPERFSEGVSKATKNPTAFVPFGWGPRICVGLNFAMIEAKMALSIILQRFSFELSSSYTHTPTAALTTQPQHGAHIVLHKL | 510 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 38088584 | 38093134 | - | Sed0003874.1 | Sed04g2516 | 711119 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed04g2516 | 510 | PRINTS | E-class P450 group I signature | 448 | 458 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2516 | 510 | PRINTS | E-class P450 group I signature | 309 | 326 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2516 | 510 | PRINTS | E-class P450 group I signature | 81 | 100 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2516 | 510 | PRINTS | E-class P450 group I signature | 195 | 213 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2516 | 510 | PRINTS | E-class P450 group I signature | 458 | 481 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2516 | 510 | PRINTS | E-class P450 group I signature | 412 | 436 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2516 | 510 | PRINTS | E-class P450 group I signature | 329 | 355 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2516 | 510 | PANTHER | CYTOCHROME P450 FAMILY MEMBER | 6 | 502 | IPR050665 | GO:0004497(PANTHER) | |
| Sed04g2516 | 510 | Gene3D | Cytochrome P450 | 69 | 509 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2516 | 510 | FunFam | Cytochrome P450 734A1 | 21 | 510 | - | - | |
| Sed04g2516 | 510 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 451 | 460 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed04g2516 | 510 | CDD | CYP72 | 74 | 506 | - | - | |
| Sed04g2516 | 510 | Pfam | Cytochrome P450 | 80 | 486 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2516 | 510 | PRINTS | P450 superfamily signature | 449 | 458 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2516 | 510 | PRINTS | P450 superfamily signature | 458 | 469 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2516 | 510 | PRINTS | P450 superfamily signature | 372 | 383 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2516 | 510 | PRINTS | P450 superfamily signature | 320 | 337 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g2516 | 510 | SUPERFAMILY | Cytochrome P450 | 72 | 508 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed04g2516 | Sed-Chr4:38088584 | Sed06g0670 | Sed-Chr6:6309800 | 1.00E-214 | dispersed | |
| Sed04g2515 | Sed-Chr4:38080325 | Sed04g2516 | Sed-Chr4:38088584 | 8.80E-278 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed04g2516 | - | - | - | 0.0 |