Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g2522 ATGGGTCGAGGGAAGATTGAAATCAAAAGGATTGAGAATGCCAATAGCAGGCAAGTTACATTCTCCAAGAGACGAGCTGGGTTGCTCAAGAAGGCCAAGGAACTTTCTATTCTTTGTGATGCTCAAGTTGCTGTTATCATCTTCTCTAATACTGGCAAGCTTTTTGAGTTTTCCAGTTCTGGCATGAAGCATACTCTTTCAAGATACAACAGATGTGTAGAATCTTTAGAGGCTGCAGTAGACAGGCACAAGGTTGAGAAACAAGAGCATGAGGTAGAGAATCTAAGAGATGAAATAACAACTCTGCAAATGAAACAATTACAGTTATTGGGAAAGGATCTGACTGGCTTGGGCTTCAAGGAATTGCAAAACCTGGAGCAACAACTAAATGAAGGGCTCTTACTGGTGAAAGAGAAGAAGGAACAGGTACTGATGGAACAACTAGAGCAATCAAGGGTACAGGTCGGCGAGCTTCGATGTCTGTTTCCGCCAGTTGACTGTCCGCTTCCTGCTTGTCTTGAATACTGCTCCCTAGAACACAAGAAAAATGGCAATAGAAGCCCGGAAATGGCCTGCAACTCTGAAATTGAAAGAGGAGATTCAGACACCACCTTGCACTTGGGGCTGCCATCTCATGTTTATTGCAAGAGAAAGATGGCTGAGAGAGGAGATATTCATTTCGACCCTATTGACCACTAA 699 43.49 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAKELSILCDAQVAVIIFSNTGKLFEFSSSGMKHTLSRYNRCVESLEAAVDRHKVEKQEHEVENLRDEITTLQMKQLQLLGKDLTGLGFKELQNLEQQLNEGLLLVKEKKEQVLMEQLEQSRVQVGELRCLFPPVDCPLPACLEYCSLEHKKNGNRSPEMACNSEIERGDSDTTLHLGLPSHVYCKRKMAERGDIHFDPIDH 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 38112232 38116155 + Sed0006178.1 Sed04g2522 711125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g2522 232 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 176 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed04g2522 232 Coils Coil 73 105 - -
Sed04g2522 232 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed04g2522 232 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed04g2522 232 Coils Coil 122 142 - -
Sed04g2522 232 Pfam K-box region 83 156 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed04g2522 232 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed04g2522 232 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Sed04g2522 232 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed04g2522 232 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed04g2522 232 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed04g2522 232 ProSiteProfiles K-box domain profile. 85 196 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed04g2522 232 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed04g2522 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed04g2522 232 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed04g2522 232 Gene3D - 14 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2522 Sed-Chr4:38112232 Sed05g1544 Sed-Chr5:29152538 3.10E-33 dispersed
Sed14g0141 Sed-Chr14:1546510 Sed04g2522 Sed-Chr4:38112232 7.20E-40 transposed
Sed04g2522 Sed-Chr4:38112232 Sed05g1319 Sed-Chr5:25817692 8.30E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38256 PF01486 K-box 1.90E-15 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g2522 - - - 0.0